Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004185

Physical Location & Seq

Genomic Coordinates Forward (+)

78682126 .. 78687640

Gene Structure 5515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGACGGACGGCCAACATCTCTTCAATAACATCTCTCTCGGCGGCCGCGGCGGCACTAATCCGGGGCAGCTAAAAATACATGCAGGAGGGATTTTGTGGAAGAAACAAGGAGGTGGGAAAGCAATTGAGGTTGATAAGGCGGACATTGTTGGAGTGACATGGATGAAGGTCCCAAAGACAAATCAACTTGGTGTTCGGATTAAAGATGGGCTGTACTATAAATTCATTGGATTTCGAGACCAGGATGTCACTAGTTTAACCAATTATTTTCAAACTACTTGGGGAATAGTAGCAGAGGAGAAGAAGCTTTCTGTCAGTGGGCGTAACTGGGGAGAAGTTGATTTAAGCGATAATATGTTGTCTTTCTTGGTTGACTCCAAGCAAGGATTTGAGGTATCTCTGGCTGATGTCTCACAAACACAGCTTCAGGGAAAAAACGACGTCACCTTAGAGTTCCATGTGGATGACACCACTGGAGCAAATGAGAAAGATTCTTTGATGGAAATAACTTTTCACATTCCCAACTCCAACACTCAATTTATGGGTGATGAGAATCGTCCTCCTGCTCAGGTATTTCGTGACAAAATCATGTCGATGGCAGATGTTGGTGCTGGAGGTGAAGATGCTGTAGTCACATTTGAGAGTATTGCAGTCCTCACACCAAGGGGTCGCTACAATGTTGAACTTCATCTTTCATTCTTGCGGTTGCAAGGGCAGGCTAATGATTTCAAAATTCAGTACAGCAGTGTTGTTCGCCTCTTTCTCCTTCCTAAGTCTAACCAGCCACATACCTTTGTTGTTGTTACTCTTGATCCGCCTATCCGTAAAGGACAAACACTGTATCCACACATTGTTTTACAGTTTGAAACTGAATATGTAGTTGAAAGTGAACTGGCAATGGGCGATGACCTTTTGAACGGCAAGTACAAAGACAAATTAGAACCAACTTATAAGGGACTAATTCATGATGTGTTCACCAAAATACTGCATGGATTGTCTGGTGCCAAAATTACTAAACCAGGGAAGTTTCGCAGCTGTCAAGATGGTTATGCTGTGAAGTCTTCACTGAAAGCTGAAGACGGAGTTCTATATCCTCTGGAAAAGAGCTTCTTTTTCCTACCTAAACCTCCTACCCTTATTACTCATGATGTGATTGACTATGTGGAATTTGAGAGGCATGGTGCTGGAGGCTCAAATATGCATTATTTTGATCTTCTTATCAGACTTAAAAGTGAGCAAGAACATCTGTTTAGAAACATTCAGAGGAATGAATATCATACTCTTTTTGACTTCATCAGTTCAAAGGGTATCAAAATCATGAACTTAGGAGATGCTCAAGTAACAGATGGTGTGTCTCCTCTTCTTGAAGAGGCAGATGATGATGCTGTTGTTGACCCACATCTTGTTCGCGTAAAGAATGAAGCCGGTGAGGAAGATAGTGATGAAGAGGATGAAGATTTTGTTATTGAGAAGGATGATGGAGGTTCTCCAACTGATGATTCTGGGGGCGAAGATTCTGATGCTAGTGAAAGTGGAGGCGAGAAAGAGAAGCCTGCTAAAAAGGAGCCCAGGAAAGAACCTTCAACTTCAAAGGTGCCATCTTCCAAGAAAAAATCCAAAGAGGTCGATGAAGATGGTCCAAAGAAGAAAAAACAGAAAAAGAAGAAGGATCCAAATGCACCAAAAAGAGCGATGTCTGGTTTCATGTTCTTCTCACAGATGGAGAGAGAGAATGTGAAGAAAACCAACCCCGGGATTGCATTTACGGATGTGGGAAGAGTGCTTGGGGACAAGTGGAAGAAGATGTCAGTGGAGGAGAAAGAACCATATGAAGCAAAGGCCCGTCAAGATAAATTACGCTACAAGGATGAAATTAGTGGCTACAACAAGAGTAACACCCCCCAACCCATGAATGTGGATTCAGGGAATGAATCTGACAGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000741 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008023 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009791 GO:0009889 GO:0009987 GO:0010197 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035101 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0048229 GO:0048284 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box POB3_N Rtt106 SSrecog

Protein Analysis

649

Amino Acids

72.42

Weight (kDa)

5.47

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POB3_N	PF17292	8 - 99	3.6e-24	POB3-like N-terminal PH domain
SSrecog	PF03531	107 - 175	1.2e-24	Structure-specific recognition protein (SSRP1)
PH1_SSRP1-like	PF21103	208 - 337	5.7e-50	SSRP1 PH domain
Rttp106-like_middle	PF08512	350 - 441	1.1e-22	Histone chaperone Rttp106-like, middle domain
HMG_box_2	PF09011	558 - 628	1.3e-15	HMG-box domain
HMG_box	PF00505	561 - 629	1e-20	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28730
fragaria_vesca	FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210
malus_domestica	MD09G1047500.v1.1 MD17G1047600.v1.1
prunus_persica	Prupe.3G271500_v2.0.a1 Prupe.3G271500_v2.0.a1
pyrus_communis	pycom111g03840 pycom17g04240
rosa_chinensis	RchiOBHm_Chr2g0169081
rosa_laevigata	RLG00000021832
rosa_multiflora	Rmu_sc0004901.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082480
rosa_rugosa	Rorug02G0536700
rosa_samantha	Rh2AG608600 Rh2BG621500 Rh2CG590200 Rh2DG632100
rosa_wichuraiana	Rw2G050460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	245
AatII	GACGTC	1 cut(s)	444
AccB1I	GGYRCC	2 cut(s)	1001, 1594
AccII	CGCG	2 cut(s)	48, 1410
AciI	CCGC	7 cut(s)	42, 46, 48, 51, 140, 703, 815
AclWI	GGATC	3 cut(s)	806, 1664, 1677
AcoI	YGGCCR	2 cut(s)	10, 43
AcsI	RAATTY	3 cut(s)	221, 732, 1166
AcuI	CTGAAG	2 cut(s)	410, 1095
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	3 cut(s)	215, 740, 926
AfiI	CCNNNNNNNGG	1 cut(s)	1752
AhlI	ACTAGT	1 cut(s)	251
AjnI	CCWGG	3 cut(s)	240, 1018, 1568
AjuI	GAANNNNNNNTTGG	2 cut(s)	1483, 1515
AluBI	AGCT	6 cut(s)	70, 307, 424, 1035, 1073, 1107
AluI	AGCT	6 cut(s)	70, 307, 424, 1035, 1073, 1107
Alw26I	GTCTC	3 cut(s)	231, 415, 1359
AlwI	GGATC	3 cut(s)	806, 1664, 1677
Ama87I	CYCGRG	1 cut(s)	1751
AoxI	GGCC	3 cut(s)	10, 43, 1839
ApeKI	GCWGC	2 cut(s)	67, 1032
ApoI	RAATTY	3 cut(s)	221, 732, 1166
AspS9I	GGNCC	3 cut(s)	169, 1637, 1840
AsuC2I	CCSGG	3 cut(s)	63, 1752, 1753
AsuHPI	GGTGA	5 cut(s)	436, 557, 629, 967, 1439
AvaI	CYCGRG	1 cut(s)	1751
AvaII	GGWCC	2 cut(s)	169, 1637
BamHI	GGATCC	1 cut(s)	1669
BanI	GGYRCC	2 cut(s)	1001, 1594
BanII	GRGCYC	1 cut(s)	1569
BbsI	GAAGAC	2 cut(s)	1053, 1083
BbvI	GCAGC	2 cut(s)	79, 1044
BccI	CCATC	9 cut(s)	200, 493, 589, 1037, 1340, 1472, 1606, 1628, 1714
BceAI	ACGGC	2 cut(s)	25, 934
BciT130I	CCWGG	3 cut(s)	242, 1020, 1570
BciVI	GTATCC	1 cut(s)	852
BcnI	CCSGG	3 cut(s)	63, 1752, 1753
BcoDI	GTCTC	3 cut(s)	231, 415, 1359
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	2 cut(s)	252, 1524
BfmI	CTRYAG	1 cut(s)	627
BfuI	GTATCC	1 cut(s)	852
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	43, 46, 49, 52, 68, 1033
BlsI	GCNGC	6 cut(s)	44, 47, 50, 53, 69, 1034
Bme1390I	CCNGG	6 cut(s)	63, 242, 1020, 1570, 1752, 1753
Bme18I	GGWCC	2 cut(s)	169, 1637
BmeT110I	CYCGRG	1 cut(s)	1751
BmgT120I	GGNCC	3 cut(s)	169, 1637, 1840
BmiI	GGNNCC	5 cut(s)	171, 1003, 1566, 1596, 1671
BmrFI	CCNGG	6 cut(s)	63, 242, 1020, 1570, 1752, 1753
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	4 cut(s)	613, 1321, 1372, 1510
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	2 cut(s)	1053, 1083
BpmI	CTGGAG	3 cut(s)	495, 633, 1206
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	1320
BpuMI	CCSGG	3 cut(s)	63, 1752, 1753
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	231
BsaJI	CCNNGG	7 cut(s)	46, 62, 662, 1019, 1568, 1750, 1751
Bsc4I	CCNNNNNNNGG	1 cut(s)	1752
Bse118I	RCCGGY	1 cut(s)	1424
Bse1I	ACTGG	3 cut(s)	332, 478, 897
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	3 cut(s)	242, 1020, 1570
BseDI	CCNNGG	7 cut(s)	46, 62, 662, 1019, 1568, 1750, 1751
BseGI	GGATG	7 cut(s)	168, 250, 469, 1456, 1480, 1774, 1873
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	1752
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	3 cut(s)	332, 478, 897
BseRI	GAGGAG	3 cut(s)	311, 1347, 1829
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	79, 1044
Bsh1236I	CGCG	2 cut(s)	48, 1410
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	12, 45, 1841
BshNI	GGYRCC	2 cut(s)	1001, 1594
BsiEI	CGRYCG	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	1751
BsiSI	CCGG	3 cut(s)	62, 1425, 1752
BslFI	GGGAC	3 cut(s)	155, 969, 1802
BslI	CCNNNNNNNGG	1 cut(s)	1752
BsmAI	GTCTC	3 cut(s)	231, 415, 1359
BsmFI	GGGAC	3 cut(s)	155, 969, 1802
BsnI	GGCC	3 cut(s)	12, 45, 1841
Bso31I	GGTCTC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	1751
Bsp1286I	GDGCHC	1 cut(s)	1569
Bsp143I	GATC	3 cut(s)	811, 1210, 1669
BspACI	CCGC	7 cut(s)	42, 46, 48, 51, 140, 703, 815
BspANI	GGCC	3 cut(s)	12, 45, 1841
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	48, 1410
BspHI	TCATGA	3 cut(s)	964, 1144, 1317
BspLI	GGNNCC	5 cut(s)	171, 1003, 1566, 1596, 1671
BspPI	GGATC	3 cut(s)	806, 1664, 1677
BspT107I	GGYRCC	2 cut(s)	1001, 1594
BspTNI	GGTCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	903
BsrFI	RCCGGY	1 cut(s)	1424
BsrI	ACTGG	3 cut(s)	332, 478, 897
BssAI	RCCGGY	1 cut(s)	1424
BssECI	CCNNGG	7 cut(s)	46, 62, 662, 1019, 1568, 1750, 1751
BssMI	GATC	3 cut(s)	811, 1210, 1669
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	662
Bst2UI	CCWGG	3 cut(s)	242, 1020, 1570
Bst4CI	ACNGT	3 cut(s)	840, 861, 1940
Bst6I	CTCTTC	5 cut(s)	26, 1362, 1365, 1440, 1771
BstACI	GRCGYC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	717, 1554
BstDEI	CTNAG	4 cut(s)	448, 567, 771, 1324
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	7 cut(s)	168, 250, 469, 1456, 1480, 1774, 1873
BstFNI	CGCG	2 cut(s)	48, 1410
BstKTI	GATC	3 cut(s)	814, 1213, 1672
BstMAI	GTCTC	3 cut(s)	231, 415, 1359
BstMBI	GATC	3 cut(s)	811, 1210, 1669
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 51
BstNI	CCWGG	3 cut(s)	242, 1020, 1570
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	6 cut(s)	61, 240, 1018, 1568, 1750, 1751
BstSFI	CTRYAG	1 cut(s)	627
BstUI	CGCG	2 cut(s)	48, 1410
BstV1I	GCAGC	2 cut(s)	79, 1044
BstV2I	GAAGAC	2 cut(s)	1053, 1083
BstX2I	RGATCY	1 cut(s)	1669
BstXI	CCANNNNNNTGG	1 cut(s)	1915
BstYI	RGATCY	1 cut(s)	1669
BstZI	CGGCCG	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	12, 45, 1841
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	2 cut(s)	918, 1706
BtsCI	GGATG	7 cut(s)	168, 250, 469, 1456, 1480, 1774, 1873
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	7 cut(s)	322, 471, 751, 836, 1064, 1815, 1945
Cac8I	GCNNGC	2 cut(s)	717, 1554
CciI	TCATGA	3 cut(s)	964, 1144, 1317
CciNI	GCGGCCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	1424
Cfr13I	GGNCC	3 cut(s)	169, 1637, 1840
Cfr42I	CCGCGG	1 cut(s)	49
Cfr9I	CCCGGG	1 cut(s)	1751
Csp6I	GTAC	3 cut(s)	214, 739, 925
CviQI	GTAC	3 cut(s)	214, 739, 925
DdeI	CTNAG	4 cut(s)	448, 567, 771, 1324
DpnI	GATC	3 cut(s)	813, 1212, 1671
DpnII	GATC	3 cut(s)	811, 1210, 1669
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	10, 43
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	5 cut(s)	26, 1362, 1365, 1440, 1771
EarI	CTCTTC	5 cut(s)	26, 1362, 1365, 1440, 1771
EciI	GGCGGA	2 cut(s)	155, 804
EclXI	CGGCCG	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	662
Eco24I	GRGCYC	1 cut(s)	1569
Eco31I	GGTCTC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	169, 1637
Eco52I	CGGCCG	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	410, 1095
Eco88I	CYCGRG	1 cut(s)	1751
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	3 cut(s)	240, 1018, 1568
EcoT14I	CCWWGG	1 cut(s)	662
EcoT22I	ATGCAT	1 cut(s)	1203
EcoT38I	GRGCYC	1 cut(s)	1569
ErhI	CCWWGG	1 cut(s)	662
FalI	AAGNNNNNCTT	2 cut(s)	1094, 1126
FaqI	GGGAC	3 cut(s)	155, 969, 1802
FauNDI	CATATG	1 cut(s)	1828
Fnu4HI	GCNGC	6 cut(s)	43, 46, 49, 52, 68, 1033
FokI	GGATG	7 cut(s)	175, 257, 476, 1463, 1487, 1781, 1880
FriOI	GRGCYC	1 cut(s)	1569
Fsp4HI	GCNGC	6 cut(s)	43, 46, 49, 52, 68, 1033
FspBI	CTAG	2 cut(s)	252, 1524
GluI	GCNGC	6 cut(s)	43, 46, 49, 52, 68, 1033
GsuI	CTGGAG	3 cut(s)	495, 633, 1206
HaeIII	GGCC	3 cut(s)	12, 45, 1841
HapII	CCGG	3 cut(s)	62, 1425, 1752
Hin1I	GRCGYC	1 cut(s)	441
HincII	GTYRAC	2 cut(s)	373, 1393
HindII	GTYRAC	2 cut(s)	373, 1393
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	7 cut(s)	374, 491, 553, 1499, 1514, 1919, 1931
HpaII	CCGG	3 cut(s)	62, 1425, 1752
HphI	GGTGA	5 cut(s)	436, 557, 629, 967, 1439
Hpy166II	GTNNAC	4 cut(s)	373, 890, 975, 1393
Hpy188I	TCNGA	5 cut(s)	198, 1223, 1263, 1519, 1936
Hpy8I	GTNNAC	4 cut(s)	373, 890, 975, 1393
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	5 cut(s)	160, 776, 1465, 1590, 1660
HpyCH4III	ACNGT	3 cut(s)	840, 861, 1940
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	7 cut(s)	83, 650, 709, 988, 1201, 1679, 1760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 51
HpyF3I	CTNAG	4 cut(s)	448, 567, 771, 1324
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	441
KspI	CCGCGG	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	811, 1210, 1669
LmnI	GCTCC	2 cut(s)	476, 1564
Lsp1109I	GCAGC	2 cut(s)	79, 1044
LweI	GCATC	4 cut(s)	613, 1321, 1372, 1510
MaeI	CTAG	2 cut(s)	252, 1524
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	9 cut(s)	154, 247, 323, 442, 578, 631, 802, 1339, 1892
MalI	GATC	3 cut(s)	813, 1212, 1671
MboI	GATC	3 cut(s)	811, 1210, 1669
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	1 cut(s)	1669
MhlI	GDGCHC	1 cut(s)	1569
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	3 cut(s)	130, 552, 1514
Mph1103I	ATGCAT	1 cut(s)	1203
MseI	TTAA	4 cut(s)	201, 257, 344, 1227
MslI	CAYNNNNRTG	3 cut(s)	462, 593, 1913
MspA1I	CMGCKG	2 cut(s)	48, 1035
MspI	CCGG	3 cut(s)	62, 1425, 1752
MspR9I	CCNGG	6 cut(s)	63, 242, 1020, 1570, 1752, 1753
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	3 cut(s)	242, 1020, 1570
MvnI	CGCG	2 cut(s)	48, 1410
MwoI	GCNNNNNNNGC	2 cut(s)	48, 51
NciI	CCSGG	3 cut(s)	63, 1752, 1753
NdeI	CATATG	1 cut(s)	1828
NdeII	GATC	3 cut(s)	811, 1210, 1669
NlaIV	GGNNCC	5 cut(s)	171, 1003, 1566, 1596, 1671
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	5 cut(s)	154, 247, 442, 578, 631
NotI	GCGGCCGC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	1203
NspI	RCATGY	1 cut(s)	83
PagI	TCATGA	3 cut(s)	964, 1144, 1317
PfeI	GAWTC	6 cut(s)	491, 553, 1499, 1514, 1919, 1931
PkrI	GCNGC	6 cut(s)	44, 47, 50, 53, 69, 1034
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	169
PsiI	TTATAA	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	3 cut(s)	240, 1018, 1568
PspGI	CCWGG	3 cut(s)	240, 1018, 1568
PspN4I	GGNNCC	5 cut(s)	171, 1003, 1566, 1596, 1671
PspPI	GGNCC	3 cut(s)	169, 1637, 1840
PspPPI	RGGWCCY	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	908, 940
PsuI	RGATCY	1 cut(s)	1669
PvuII	CAGCTG	1 cut(s)	1035
RsaI	GTAC	3 cut(s)	215, 740, 926
RsaNI	GTAC	3 cut(s)	214, 739, 925
RseI	CAYNNNNRTG	3 cut(s)	462, 593, 1913
SacII	CCGCGG	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	201, 257, 344, 1227
SatI	GCNGC	6 cut(s)	43, 46, 49, 52, 68, 1033
Sau3AI	GATC	3 cut(s)	811, 1210, 1669
Sau96I	GGNCC	3 cut(s)	169, 1637, 1840
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	6 cut(s)	63, 242, 1020, 1570, 1752, 1753
SduI	GDGCHC	1 cut(s)	1569
SfaNI	GCATC	4 cut(s)	613, 1321, 1372, 1510
SfcI	CTRYAG	1 cut(s)	627
Sfr303I	CCGCGG	1 cut(s)	49
SgrBI	CCGCGG	1 cut(s)	49
SinI	GGWCC	2 cut(s)	169, 1637
SmaI	CCCGGG	1 cut(s)	1753
SmiMI	CAYNNNNRTG	3 cut(s)	462, 593, 1913
SmlI	CTYRAG	1 cut(s)	1335
SmoI	CTYRAG	1 cut(s)	1335
SpeI	ACTAGT	1 cut(s)	251
SsiI	CCGC	7 cut(s)	42, 46, 48, 51, 140, 703, 815
SspMI	CTAG	2 cut(s)	252, 1524
StyD4I	CCNGG	6 cut(s)	61, 240, 1018, 1568, 1750, 1751
StyI	CCWWGG	1 cut(s)	662
TaaI	ACNGT	3 cut(s)	840, 861, 1940
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	235, 593, 1626
TatI	WGTACW	3 cut(s)	213, 738, 924
TauI	GCSGC	4 cut(s)	45, 48, 51, 54
TfiI	GAWTC	6 cut(s)	491, 553, 1499, 1514, 1919, 1931
Tru1I	TTAA	4 cut(s)	201, 257, 344, 1227
Tru9I	TTAA	4 cut(s)	201, 257, 344, 1227
TscAI	CASTG	7 cut(s)	322, 478, 751, 843, 1071, 1815, 1945
TseFI	GTSAC	5 cut(s)	154, 247, 442, 578, 631
TseI	GCWGC	2 cut(s)	67, 1032
Tsp45I	GTSAC	5 cut(s)	154, 247, 442, 578, 631
TspGWI	ACGGA	4 cut(s)	20, 812, 1095, 1781
TspMI	CCCGGG	1 cut(s)	1751
TspRI	CASTG	7 cut(s)	322, 478, 751, 843, 1071, 1815, 1945
VpaK11BI	GGWCC	2 cut(s)	169, 1637
XapI	RAATTY	3 cut(s)	221, 732, 1166
XceI	RCATGY	1 cut(s)	83
XmaI	CCCGGG	1 cut(s)	1751
XspI	CTAG	2 cut(s)	252, 1524
ZraI	GACGTC	1 cut(s)	442
Zsp2I	ATGCAT	1 cut(s)	1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.