Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004185

Physical Location & Seq

Genomic Coordinates Forward (+)

66648639 .. 66651068

Gene Structure 2430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0536700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTACTACTTCAGCCTCGAAAATCATGTCTCTGTCTCTCAGTGTGATTTTGGGTCTCTCATTGTTCTTGGGTCTGGTCAGCTCGGCCAAATTCGATCAGCTTTTCCAGCCCTACTGGGCCTCCGACCATTTCACATACGAAGGCGAGCTTCTTCATATGAAGCTCGACAAATTTTCCGGAGCTGGGTTTTCATCCAAGAACAAGTACATGTTTGGCAAAGTGACCGTACAGATTAAGCTCATAGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCGGACGGTCCACTGCACAACGAGTTTGATTTCGAGTTCCTGGGCAACACCACAGGGGAGCCTTACTCTGTTCAGACCAACCTCTATATCAATGGCGTCGGCAATAGAGAGCAAAGGCTCGACCTTTGGTTTGACCCTACCACGGACTTCCACTCCTACTCCATTTTCTGGAACCAGCGCCAAGTAGTGTTTCTAGTGGATGAGACCCCAATTAGGGTACACACAAACATGGAAAGCAAGGGTTTGCCCTTCCCCAAGGACCAGCCTATGGGGGTATACAGCTCAATCTGGAATGCCGATGACTGGGCCACACAGGGCGGGCGGGTCAAGACCGATTGGTCCCATGGACCCTTTGTTGCATCTTATAAGGGCTTTGCCATCAATGCCTGTGAGTGCCCGGTCTCCGTGGCCGGAGTCGATAACGCCAAGAAGTGCACCAGCAGCGCAGACAAGAAGTACTGGTGGGATGAGCCTGTGCTGTCCGAGCTGAACGTCCACCAGAACCACCAGCTGGTGTGGGTTAAGAACCACCACATGGTCTATGACTACTGCACTGATACTGCTAGGTTCCCAGTCACTCCAGTTGAGTGTGTGCACCACGGTCACCACCGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000741 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008023 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009791 GO:0009889 GO:0009987 GO:0010197 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035101 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0048229 GO:0048284 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box POB3_N Rtt106 SSrecog

Protein Analysis

301

Amino Acids

34.07

Weight (kDa)

5.98

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 210	3.9e-62	Glycosyl hydrolases family 16
XET_C	PF06955	246 - 293	1.2e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28730
fragaria_vesca	FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210
malus_domestica	MD09G1047500.v1.1 MD17G1047600.v1.1
prunus_persica	Prupe.3G271500_v2.0.a1 Prupe.3G271500_v2.0.a1
pyrus_communis	pycom111g03840 pycom17g04240
rosa_chinensis	RchiOBHm_Chr2g0169081
rosa_laevigata	RLG00000021832
rosa_multiflora	Rmu_sc0004901.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082480
rosa_rugosa	Rorug02G0536700
rosa_samantha	Rh2AG608600 Rh2BG621500 Rh2CG590200 Rh2DG632100
rosa_wichuraiana	Rw2G050460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AasI	GACNNNNNNGTC	1 cut(s)	625
AccB7I	CCANNNNNTGG	4 cut(s)	456, 556, 799, 823
AccI	GTMKAC	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	3 cut(s)	606, 610, 898
AcoI	YGGCCR	2 cut(s)	87, 696
AcsI	RAATTY	2 cut(s)	92, 173
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	4 cut(s)	209, 231, 507, 746
AfiI	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
AflIII	ACRYGT	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	9 cut(s)	84, 103, 151, 166, 185, 241, 570, 775, 799
AluI	AGCT	9 cut(s)	84, 103, 151, 166, 185, 241, 570, 775, 799
Alw21I	GWGCWC	2 cut(s)	725, 885
Alw26I	GTCTC	5 cut(s)	36, 42, 62, 485, 694
Alw44I	GTGCAC	2 cut(s)	721, 881
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	4 cut(s)	87, 120, 594, 696
ApaLI	GTGCAC	2 cut(s)	721, 881
ApeKI	GCWGC	1 cut(s)	729
ApoI	RAATTY	2 cut(s)	92, 173
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 401, 433
AspLEI	GCGC	2 cut(s)	468, 734
AspS9I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	263, 884
AvaII	GGWCC	4 cut(s)	296, 547, 627, 635
BaeGI	GKGCMC	3 cut(s)	686, 725, 885
Bbv12I	GWGCWC	2 cut(s)	725, 885
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	1 cut(s)	674
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	5 cut(s)	36, 42, 62, 485, 694
BfaI	CTAG	3 cut(s)	482, 852, 904
BfoI	RGCGCY	1 cut(s)	469
BisI	GCNGC	1 cut(s)	730
BlsI	GCNGC	1 cut(s)	731
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	2 cut(s)	329, 686
Bme18I	GGWCC	4 cut(s)	296, 547, 627, 635
BmgT120I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
BmiI	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
BmrFI	CCNGG	2 cut(s)	329, 686
BmrI	ACTGGG	3 cut(s)	127, 601, 854
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	3 cut(s)	127, 601, 854
BplI	GAGNNNNNCTC	4 cut(s)	239, 271, 338, 370
BpmI	CTGGAG	1 cut(s)	852
BpuMI	CCSGG	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	3 cut(s)	62, 485, 694
BsaJI	CCNNGG	6 cut(s)	328, 429, 543, 631, 693, 886
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 425, 431, 455, 461
Bsc4I	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
Bse1I	ACTGG	5 cut(s)	122, 596, 752, 860, 869
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	6 cut(s)	328, 429, 543, 631, 693, 886
BseGI	GGATG	3 cut(s)	194, 493, 760
BseLI	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	5 cut(s)	122, 596, 752, 860, 869
BseSI	GKGCMC	3 cut(s)	686, 725, 885
BseXI	GCAGC	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	2 cut(s)	287, 823
BshFI	GGCC	4 cut(s)	89, 122, 596, 698
BsiHKAI	GWGCWC	2 cut(s)	725, 885
BsiSI	CCGG	3 cut(s)	180, 686, 699
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	9 cut(s)	186, 430, 456, 501, 502, 556, 591, 799, 823
BsmAI	GTCTC	5 cut(s)	36, 42, 62, 485, 694
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	4 cut(s)	89, 122, 596, 698
Bso31I	GGTCTC	3 cut(s)	62, 485, 694
Bsp1286I	GDGCHC	3 cut(s)	686, 725, 885
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	3 cut(s)	606, 610, 898
BspANI	GGCC	4 cut(s)	89, 122, 596, 698
BspCNI	CTCAG	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	179
BspLI	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
BspTNI	GGTCTC	3 cut(s)	62, 485, 694
BsrI	ACTGG	5 cut(s)	122, 596, 752, 860, 869
BssECI	CCNNGG	6 cut(s)	328, 429, 543, 631, 693, 886
BssMI	GATC	1 cut(s)	97
BssNAI	GTATAC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	543, 631
Bst1107I	GTATAC	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	229, 268, 296, 890
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	149, 608
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	4 cut(s)	429, 631, 693, 886
BstEII	GGTNACC	1 cut(s)	890
BstF5I	GGATG	3 cut(s)	194, 493, 760
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	468, 734
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	5 cut(s)	36, 42, 62, 485, 694
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 671, 729, 772
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	214
BstPI	GGTNACC	1 cut(s)	890
BstSCI	CCNGG	2 cut(s)	327, 684
BstSLI	GKGCMC	3 cut(s)	686, 725, 885
BstV1I	GCAGC	1 cut(s)	741
BstZ17I	GTATAC	1 cut(s)	565
BsuRI	GGCC	4 cut(s)	89, 122, 596, 698
BtgI	CCRYGG	4 cut(s)	429, 631, 693, 886
BtsCI	GGATG	3 cut(s)	194, 493, 760
BtsI	GCAGTG	2 cut(s)	270, 299
BtsIMutI	CAGTG	4 cut(s)	49, 270, 299, 840
Cac8I	GCNNGC	2 cut(s)	149, 608
CfoI	GCGC	2 cut(s)	468, 734
Cfr13I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	4 cut(s)	208, 230, 506, 745
CviAII	CATG	5 cut(s)	28, 211, 517, 632, 823
CviQI	GTAC	4 cut(s)	208, 230, 506, 745
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	625
DseDI	GACNNNNNNGTC	1 cut(s)	625
EaeI	YGGCCR	2 cut(s)	87, 696
Eco130I	CCWWGG	2 cut(s)	543, 631
Eco31I	GGTCTC	3 cut(s)	62, 485, 694
Eco47I	GGWCC	4 cut(s)	296, 547, 627, 635
Eco91I	GGTNACC	1 cut(s)	890
EcoO65I	GGTNACC	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	543, 631
ErhI	CCWWGG	2 cut(s)	543, 631
FaeI	CATG	5 cut(s)	31, 214, 520, 635, 826
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	5 cut(s)	27, 210, 516, 631, 822
FauI	CCCGC	2 cut(s)	599, 603
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	3 cut(s)	181, 500, 767
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	3 cut(s)	482, 852, 904
GlaI	GCGC	2 cut(s)	467, 733
GluI	GCNGC	1 cut(s)	730
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	469
HaeIII	GGCC	4 cut(s)	89, 122, 596, 698
HapII	CCGG	3 cut(s)	180, 686, 699
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	2 cut(s)	468, 734
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	5 cut(s)	31, 214, 520, 635, 826
Hin6I	GCGC	2 cut(s)	466, 732
HinP1I	GCGC	2 cut(s)	466, 732
HinfI	GANTC	2 cut(s)	254, 702
HpaII	CCGG	3 cut(s)	180, 686, 699
HphI	GGTGA	2 cut(s)	263, 884
Hpy166II	GTNNAC	6 cut(s)	299, 508, 565, 723, 784, 883
Hpy188I	TCNGA	4 cut(s)	127, 292, 363, 772
Hpy188III	TCNNGA	4 cut(s)	180, 457, 577, 616
Hpy8I	GTNNAC	6 cut(s)	299, 508, 565, 723, 784, 883
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	137, 547
HpyCH4III	ACNGT	4 cut(s)	229, 268, 296, 890
HpyCH4IV	ACGT	1 cut(s)	780
HpyCH4V	TGCA	5 cut(s)	304, 647, 723, 840, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 671, 729, 772
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	780
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	5 cut(s)	31, 214, 520, 635, 826
HspAI	GCGC	2 cut(s)	466, 732
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	182, 346
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	3 cut(s)	482, 852, 904
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	5 cut(s)	223, 251, 268, 862, 890
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	3 cut(s)	686, 725, 885
MluCI	AATT	3 cut(s)	92, 173, 498
MlyI	GAGTC	2 cut(s)	248, 711
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	4 cut(s)	28, 133, 241, 380
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	2 cut(s)	237, 810
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	3 cut(s)	180, 686, 699
MspR9I	CCNGG	2 cut(s)	329, 686
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	109, 671, 729, 772
NciI	CCSGG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	631
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	5 cut(s)	31, 214, 520, 635, 826
NlaIV	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	5 cut(s)	223, 251, 268, 862, 890
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	1 cut(s)	586
PflMI	CCANNNNNTGG	4 cut(s)	456, 556, 799, 823
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	2 cut(s)	248, 710
PpsI	GAGTC	2 cut(s)	248, 710
PscI	ACATGT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	890
PspFI	CCCAGC	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	5 cut(s)	348, 461, 629, 637, 857
PspPI	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	4 cut(s)	209, 231, 507, 746
RsaNI	GTAC	4 cut(s)	208, 230, 506, 745
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	237, 810
SatI	GCNGC	1 cut(s)	730
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	6 cut(s)	120, 296, 547, 594, 627, 635
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	2 cut(s)	248, 711
ScrFI	CCNGG	2 cut(s)	329, 686
SduI	GDGCHC	3 cut(s)	686, 725, 885
SfaNI	GCATC	1 cut(s)	656
SinI	GGWCC	4 cut(s)	296, 547, 627, 635
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	92, 173, 498
SsiI	CCGC	3 cut(s)	606, 610, 898
SspMI	CTAG	3 cut(s)	482, 852, 904
StyD4I	CCNGG	2 cut(s)	327, 684
StyI	CCWWGG	2 cut(s)	543, 631
TaaI	ACNGT	4 cut(s)	229, 268, 296, 890
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	6 cut(s)	20, 96, 168, 321, 408, 705
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	3 cut(s)	92, 173, 498
TatI	WGTACW	2 cut(s)	207, 744
Tru1I	TTAA	2 cut(s)	237, 810
Tru9I	TTAA	2 cut(s)	237, 810
TscAI	CASTG	4 cut(s)	49, 277, 306, 847
TseFI	GTSAC	5 cut(s)	223, 251, 268, 862, 890
TseI	GCWGC	1 cut(s)	729
Tsp45I	GTSAC	5 cut(s)	223, 251, 268, 862, 890
TspDTI	ATGAA	3 cut(s)	146, 176, 183
TspGWI	ACGGA	2 cut(s)	446, 682
TspRI	CASTG	4 cut(s)	49, 277, 306, 847
Van91I	CCANNNNNTGG	4 cut(s)	456, 556, 799, 823
VneI	GTGCAC	2 cut(s)	721, 881
VpaK11BI	GGWCC	4 cut(s)	296, 547, 627, 635
XapI	RAATTY	2 cut(s)	92, 173
XceI	RCATGY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	3 cut(s)	482, 852, 904
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.