pycom111g03840

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
2328000 .. 2331719
3720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03840.4

Sequence Viewer

Length: 1332 bp
ATGACAGACGGCCACCTCTTCAACAATATCTCCCTCGGCGGCCGCGGCGGCACGAATCCGGGGCAGCTAAAAATATTTTCAGGAGGGATTTTATGGAAAAAACAGGGAGGGGGTAAAGCAGTTGAGGTTGATAAAGCTGACATTGTTGGGGTAACATGGATGAAGGTCCCAAAGACTAACCAACTTAGTGTTCAGATAAAAGACGGGTTATACTACAAGTTCATTGGATTTCGTGACCAGGATGTCACTAGTCTGACCAATTATTTTCAAAATACATGTGGGTTAACACCGGCAGAGAAGCAACTTTCTGTCAGCGGACGTAATTGGGGAGAAGTCGATTTAAGTGGGAATATGCTGACTTTCTTGGTTGACTCCAAGCAAGCATTTGAGGTATCTTTGGCTGATGTCTCACAAACACAACTTCAGGGGAAAAATGATGTCATCTTAGAGTTCCACGTGGATGATACAACAGGAGCTAATGAGAAAGATTCTTTGATGGAAATAAGCTTTCATATACCTAACTCCAACACTCAATTTGTTGGTGACGAGAGTCATCCTCCTGCTCAGGTTTTTCGTGACAAAATCATGTCAATGGCAGATGTTGGTGCTGGAGGTGAAGATGCTGTTACCACATTTGATAGCATTGCAATCCTCACACCAAGGGGTCGCTACAGTGTGGAACTTCATCTTTCATTCTTGCGGCTTCAAGGGGCTAATGATTTCAAAATTCAGTACAGCAGTGTTGTTCGTCTGTTTCTACTTCCTAGGTCTAACCAGCCTCATACCTTTGTTGTTGTCACTCTTGATCCTCCCATCCGTAAAGGCCAAACATTGTACCCGCATATTGTTTTGCAGTTTGAAACTGACCTTGTGTATCAAACCGAACTGACCATGAGTGAAGAACTTTTGAACACGAAATACAAGGACAAGTTAGAACTATCTTATAAGGGACTAATGCATGAAGTGTTCACCACAATATTGCGTGGCTTGTCTGGTGCCAAAGTTACGAAACCAGGAAAATTCCGCAGCTGTCAAGATGGTTATGCTGTCAAATCTTCACTGAAAGCTGAAGATGGAGTTCTATATCCTCTTGAGAAGAGCTTCTTTTTCCTACCAAAACCTCCCACCCTTATTCTTCATGATCAGATAGAATTTATTGACTATGTGGAATTTGAGAGGCATGGTGCTGGAGGCTCAAATATGCACTATTTTGATCTTCTCATCAGACTCAAAAGTGAGCAAGAACACCTGTTCCGAAACATTCAGAGGAATGAATATCATAATCTTTTTGACTTCATCAGGTTGGTAATGAGTACTGGTTATTTTCCATAG

Protein Analysis

444

Amino Acids

49.89

Weight (kDa)

6.02

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 945
AasI GACNNNNNNGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 995
AccII CGCG 1 cut(s) 45
AciI CCGC 8 cut(s) 39, 43, 45, 48, 315, 700, 839, 1024
AclWI GGATC 1 cut(s) 800
AcoI YGGCCR 2 cut(s) 10, 40
AcsI RAATTY 4 cut(s) 726, 1019, 1151, 1169
AcuI CTGAAG 2 cut(s) 407, 1089
AcvI CACGTG 1 cut(s) 457
AfaI GTAC 3 cut(s) 734, 836, 1315
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 6 cut(s) 22, 269, 707, 724, 860, 910
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 2 cut(s) 237, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AloI GAACNNNNNNTCC 2 cut(s) 1236, 1268
AluBI AGCT 7 cut(s) 67, 137, 476, 507, 1029, 1067, 1101
AluI AGCT 7 cut(s) 67, 137, 476, 507, 1029, 1067, 1101
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 1 cut(s) 800
AoxI GGCC 3 cut(s) 10, 40, 823
ApeKI GCWGC 2 cut(s) 64, 1026
ApoI RAATTY 4 cut(s) 726, 1019, 1151, 1169
Asp700I GAANNNNTTC 1 cut(s) 1100
AspA2I CCTAGG 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 3 cut(s) 554, 626, 961
AvaII GGWCC 1 cut(s) 166
AvrII CCTAGG 1 cut(s) 764
BanI GGYRCC 1 cut(s) 995
BbrPI CACGTG 1 cut(s) 457
BbvI GCAGC 2 cut(s) 76, 1038
BccI CCATC 4 cut(s) 490, 821, 1031, 1067
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 239, 1014
BclI TGATCA 1 cut(s) 1141
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 412
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 249, 765
BfmI CTRYAG 1 cut(s) 670
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 7 cut(s) 40, 43, 46, 49, 65, 701, 1027
BlnI CCTAGG 1 cut(s) 764
BlsI GCNGC 7 cut(s) 41, 44, 47, 50, 66, 702, 1028
BmcAI AGTACT 1 cut(s) 1315
Bme1390I CCNGG 3 cut(s) 60, 239, 1014
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 168, 997
BmrFI CCNGG 3 cut(s) 60, 239, 1014
BmsI GCATC 1 cut(s) 610
BoxI GACNNNNGTC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpmI CTGGAG 2 cut(s) 630, 1209
Bpu10I CCTNAGC 1 cut(s) 564
BpuEI CTTGAG 1 cut(s) 1112
BpuMI CCSGG 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 457
BsaJI CCNNGG 5 cut(s) 34, 43, 59, 659, 764
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 1321
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 2 cut(s) 239, 1014
BseDI CCNNGG 5 cut(s) 34, 43, 59, 659, 764
BseGI GGATG 5 cut(s) 165, 247, 466, 553, 813
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 1 cut(s) 1321
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 76, 1038
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 3 cut(s) 12, 42, 825
BshNI GGYRCC 1 cut(s) 995
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 2 cut(s) 59, 290
BslFI GGGAC 2 cut(s) 152, 963
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 2 cut(s) 152, 963
BsnI GGCC 3 cut(s) 12, 42, 825
Bsp143I GATC 3 cut(s) 805, 1141, 1213
BspACI CCGC 8 cut(s) 39, 43, 45, 48, 315, 700, 839, 1024
BspANI GGCC 3 cut(s) 12, 42, 825
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 1138
BspLI GGNNCC 2 cut(s) 168, 997
BspPI GGATC 1 cut(s) 800
BspQI GCTCTTC 1 cut(s) 1091
BspT107I GGYRCC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 642
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 1321
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 5 cut(s) 34, 43, 59, 659, 764
BssMI GATC 3 cut(s) 805, 1141, 1213
BssT1I CCWWGG 2 cut(s) 659, 764
Bst2UI CCWGG 2 cut(s) 239, 1014
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 2 cut(s) 23, 1091
BstBAI YACGTR 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 185, 445, 564
BstDSI CCRYGG 1 cut(s) 43
BstF5I GGATG 5 cut(s) 165, 247, 466, 553, 813
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 3 cut(s) 808, 1144, 1216
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 3 cut(s) 805, 1141, 1213
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 45, 48
BstNI CCWGG 2 cut(s) 239, 1014
BstNSI RCATGY 1 cut(s) 279
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 3 cut(s) 58, 237, 1012
BstSFI CTRYAG 1 cut(s) 670
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 76, 1038
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 12, 42, 825
BtgI CCRYGG 1 cut(s) 43
BtsCI GGATG 5 cut(s) 165, 247, 466, 553, 813
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 3 cut(s) 679, 745, 1058
Cac8I GCNNGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 1138
CciNI GCGGCCGC 1 cut(s) 40
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 166
Cfr42I CCGCGG 1 cut(s) 46
Csp6I GTAC 3 cut(s) 733, 835, 1314
CviAII CATG 7 cut(s) 156, 276, 586, 892, 959, 1139, 1181
CviQI GTAC 3 cut(s) 733, 835, 1314
DdeI CTNAG 3 cut(s) 185, 445, 564
DpnI GATC 3 cut(s) 807, 1143, 1215
DpnII GATC 3 cut(s) 805, 1141, 1213
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 10, 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 23, 1091
EarI CTCTTC 2 cut(s) 23, 1091
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 659, 764
Eco47I GGWCC 1 cut(s) 166
Eco52I CGGCCG 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 407, 1089
Eco72I CACGTG 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 237, 1012
EcoT14I CCWWGG 2 cut(s) 659, 764
EcoT22I ATGCAT 1 cut(s) 960
ErhI CCWWGG 2 cut(s) 659, 764
FaeI CATG 7 cut(s) 159, 279, 589, 895, 962, 1142, 1184
FalI AAGNNNNNCTT 2 cut(s) 1088, 1120
FaqI GGGAC 2 cut(s) 152, 963
FatI CATG 7 cut(s) 155, 275, 585, 891, 958, 1138, 1180
FauI CCCGC 1 cut(s) 846
FbaI TGATCA 1 cut(s) 1141
Fnu4HI GCNGC 7 cut(s) 40, 43, 46, 49, 65, 701, 1027
FokI GGATG 5 cut(s) 172, 254, 473, 540, 800
Fsp4HI GCNGC 7 cut(s) 40, 43, 46, 49, 65, 701, 1027
FspBI CTAG 2 cut(s) 249, 765
GluI GCNGC 7 cut(s) 40, 43, 46, 49, 65, 701, 1027
GsuI CTGGAG 2 cut(s) 630, 1209
HaeIII GGCC 3 cut(s) 12, 42, 825
HapII CCGG 2 cut(s) 59, 290
Hin1II CATG 7 cut(s) 159, 279, 589, 895, 962, 1142, 1184
HincII GTYRAC 2 cut(s) 285, 370
HindII GTYRAC 2 cut(s) 285, 370
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 5 cut(s) 55, 371, 488, 550, 1227
HpaI GTTAAC 1 cut(s) 285
HpaII CCGG 2 cut(s) 59, 290
HphI GGTGA 3 cut(s) 554, 626, 961
Hpy166II GTNNAC 3 cut(s) 285, 370, 969
Hpy188I TCNGA 6 cut(s) 195, 255, 1146, 1226, 1256, 1266
Hpy188III TCNNGA 7 cut(s) 81, 233, 575, 803, 1034, 1091, 1139
Hpy8I GTNNAC 3 cut(s) 285, 370, 969
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 2 cut(s) 319, 456
HpyCH4V TGCA 4 cut(s) 647, 853, 958, 1204
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 48
HpyF3I CTNAG 3 cut(s) 185, 445, 564
HpySE526I ACGT 2 cut(s) 319, 456
Hsp92II CATG 7 cut(s) 159, 279, 589, 895, 962, 1142, 1184
Ksp22I TGATCA 1 cut(s) 1141
KspAI GTTAAC 1 cut(s) 285
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 3 cut(s) 805, 1141, 1213
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 2 cut(s) 76, 1038
LweI GCATC 1 cut(s) 610
MaeI CTAG 2 cut(s) 249, 765
MaeII ACGT 2 cut(s) 319, 456
MaeIII GTNAC 8 cut(s) 151, 233, 244, 542, 575, 625, 796, 1003
MalI GATC 3 cut(s) 807, 1143, 1215
MboI GATC 3 cut(s) 805, 1141, 1213
MboII GAAGA 8 cut(s) 10, 629, 911, 1047, 1082, 1108, 1127, 1208
MluCI AATT 7 cut(s) 259, 322, 533, 726, 1019, 1151, 1169
MlyI GAGTC 3 cut(s) 365, 559, 1221
MmeI TCCRAC 1 cut(s) 549
Mph1103I ATGCAT 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 1100
MseI TTAA 2 cut(s) 284, 341
MslI CAYNNNNRTG 2 cut(s) 459, 590
MspA1I CMGCKG 3 cut(s) 45, 315, 1029
MspI CCGG 2 cut(s) 59, 290
MspR9I CCNGG 3 cut(s) 60, 239, 1014
MvaI CCWGG 2 cut(s) 239, 1014
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 45, 48
NciI CCSGG 1 cut(s) 60
NdeII GATC 3 cut(s) 805, 1141, 1213
NlaIII CATG 7 cut(s) 159, 279, 589, 895, 962, 1142, 1184
NlaIV GGNNCC 2 cut(s) 168, 997
NmeAIII GCCGAG 1 cut(s) 15
NmuCI GTSAC 5 cut(s) 233, 244, 542, 575, 796
NotI GCGGCCGC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 960
NspI RCATGY 1 cut(s) 279
PagI TCATGA 1 cut(s) 1138
PciI ACATGT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 1091
PdmI GAANNNNTTC 1 cut(s) 1100
PfeI GAWTC 2 cut(s) 55, 488
PkrI GCNGC 7 cut(s) 41, 44, 47, 50, 66, 702, 1028
PleI GAGTC 3 cut(s) 365, 558, 1221
PmaCI CACGTG 1 cut(s) 457
PmlI CACGTG 1 cut(s) 457
PpsI GAGTC 3 cut(s) 365, 558, 1221
Ppu21I YACGTR 1 cut(s) 457
PpuMI RGGWCCY 1 cut(s) 166
PscI ACATGT 1 cut(s) 275
PshAI GACNNNNGTC 1 cut(s) 549
PsiI TTATAA 1 cut(s) 945
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 237, 1012
PspCI CACGTG 1 cut(s) 457
PspGI CCWGG 2 cut(s) 237, 1012
PspN4I GGNNCC 2 cut(s) 168, 997
PspPI GGNCC 1 cut(s) 166
PspPPI RGGWCCY 1 cut(s) 166
PsrI GAACNNNNNNTAC 2 cut(s) 902, 934
PvuII CAGCTG 1 cut(s) 1029
RsaI GTAC 3 cut(s) 734, 836, 1315
RsaNI GTAC 3 cut(s) 733, 835, 1314
RseI CAYNNNNRTG 2 cut(s) 459, 590
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 1091
SaqAI TTAA 2 cut(s) 284, 341
SatI GCNGC 7 cut(s) 40, 43, 46, 49, 65, 701, 1027
Sau3AI GATC 3 cut(s) 805, 1141, 1213
Sau96I GGNCC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 1315
SchI GAGTC 3 cut(s) 365, 559, 1221
ScrFI CCNGG 3 cut(s) 60, 239, 1014
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 1 cut(s) 670
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 2 cut(s) 459, 590
SmlI CTYRAG 1 cut(s) 1091
SmoI CTYRAG 1 cut(s) 1091
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 7 cut(s) 259, 322, 533, 726, 1019, 1151, 1169
SsiI CCGC 8 cut(s) 39, 43, 45, 48, 315, 700, 839, 1024
SspI AATATT 2 cut(s) 75, 978
SspMI CTAG 2 cut(s) 249, 765
StyD4I CCNGG 3 cut(s) 58, 237, 1012
StyI CCWWGG 2 cut(s) 659, 764
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 2 cut(s) 322, 459
TaqI TCGA 1 cut(s) 336
TasI AATT 7 cut(s) 259, 322, 533, 726, 1019, 1151, 1169
TatI WGTACW 2 cut(s) 732, 1313
TauI GCSGC 5 cut(s) 42, 45, 48, 51, 703
TfiI GAWTC 2 cut(s) 55, 488
Tru1I TTAA 2 cut(s) 284, 341
Tru9I TTAA 2 cut(s) 284, 341
TscAI CASTG 3 cut(s) 679, 745, 1065
TseFI GTSAC 5 cut(s) 233, 244, 542, 575, 796
TseI GCWGC 2 cut(s) 64, 1026
Tsp45I GTSAC 5 cut(s) 233, 244, 542, 575, 796
TspDTI ATGAA 9 cut(s) 176, 211, 500, 674, 681, 975, 1127, 1285, 1287
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 3 cut(s) 679, 745, 1065
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 4 cut(s) 726, 1019, 1151, 1169
XceI RCATGY 1 cut(s) 279
XmaJI CCTAGG 1 cut(s) 764
XmnI GAANNNNTTC 1 cut(s) 1100
XspI CTAG 2 cut(s) 249, 765
ZrmI AGTACT 1 cut(s) 1315
Zsp2I ATGCAT 1 cut(s) 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.