Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004185

Physical Location & Seq

Genomic Coordinates Forward (+)

83571093 .. 83578024

Gene Structure 6932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG608600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGAAACAGAATCCGGGCCAGCTAAAAATACATCCAGGAGGGATTTTTTGGAAGAAACAAGGGGGTGGGAAAGCAATTGAGGTTGATAAGGCGAACATTGTTGGAGTGACATGGATGAAGGTCCCAAAGACAAATCAACTTGGTGTTCGGATTAAAGATGGGTTGTACTATAAATTCATTGGATTTCGAGACCAGGATGTCACTGGTTTAACCAATTATTTCCAAACTACTTTTGGAATAGTAACGGAGGAGAAGAAGCTTTCTGTCAGTGGGCGTAACTGGGGAGAAGTTGATTTAAGCGATAATATGCTGTCTTTCTTGGTTGACTCCAAGCAAGGATTTGAGGTATCTTTGGCTGATGTCTCGCAAACACAGCTTCAGGGGAAAAACGACGTCACCTTAGAGTTCCATGTGGATGACACCACTGGAGCAAACGAGAAAGATTCTTTGATGGAAGTAACTTTTCACATTCCCAACTCCAACACTCAATTTATGGGTGATGAGAATCGTCCTCCTGCTCAGGTATTTCGTGACAAAATCATGTCGATGGCAGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTCACATTTGAGAGTATTGCAGTCCTCACACCAAGGGGTCGCTACAATGTTGAACTTCATCTTTCATTCTTGCGGTTGCAAGGGCAGGCTAATGATTTCAAAATTCAGTACAGCAGTGTTGTTCGCCTCTTTCTCCTTCCTAAGTCTAACCAGCCACATACCTTTGTTGTTGTTACTCTTGATCCGCCTATCCGTAAAGGACAAACACTGTATCCACACATTGTTTTGCAGTTTGAAACTGAATATGTAGTTGAAAGTGAACTGGCAATAAGCGATGACCTTTTAAACGGCAAGTACAAAGACAAGTTAGAACCAACTTATAAGGGACTAATTCATGATGTGTTCACCAAAATACTGCATGGATTGTCTGGTGCCAAAATTACTAAACCAGGGAAGTTCCGCAGCTGTCAAGATGGTTATGCTGTGAAGTCTTCACTGAAAGCTGAAGACGGAGTTCTATATCCTCTGGAAAAGAGCTTCTTTTTCCTACCTAAACCTCCTACCCTTATTACTCATGATGTGATTGACTATGTGGAATTTGAGAGGCATGGTGCTGGAGGCTCAAATATGCATTATTTTGATCTTCTTATCAGACTTAAAAGTGAGCAAGAACATCTGTTTAGAAACATTCAGAGGAATGAATATCATACTCTTTTTGACTTCATCAGTTTAAAGGGTATCAAAATCATGAACTTAGGAGATGCTCAAGTACCAGATGGTGTGTCTCCTCTTCTTGAAGAGGCAGATGATGATGCTGTTGTTGACCCACATCTTGTTCGCGTAAAGAATGAAGCTGGTGAGGAAGATAGTGATGAAGAGGATGAAGATTTTGTTATTGAGAAGGATGATGGAGGTTCTCCAACTGATGATTCTGGGGGCGAAGATTCTGATGCTAGTGAAAGTGGAGGCGAGAAAGAGAAGCCTGCTAAAAAGGAGCCCAGGAAAGAACCTTCAACTTCAAAGGTGCCATCTTCCAAGAAAAAATCCAAAGAGGTCGATGAAGATGGTCCAAAGAAGAAAAAACAGAAAAAGAAGAAGGATCCAAATGCACCAAAAAGAGCAATGTCTGGTTTCATGTTCTTCTCACAGATGGAGAGAGAGAATGTGAAGAAAACCAACCCCGGGATTGCATTTACGGATGTGGGAAGAGTGCTTGGGGACAAGTGGAAGAAGATGTCAGCGGAGGAGAAAGAACCATATGAAGCAAAGGCCCGTCAAGATAAATTACGCTACAAGGATGAAATTAGTGGCTACAACAAGAGTAACACCCCCCAACCCATGAATGTGGATTCAGGGAATGAATCTGACAGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000741 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008023 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009791 GO:0009889 GO:0009987 GO:0010197 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035101 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0048229 GO:0048284 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box POB3_N Rtt106 SSrecog

Protein Analysis

632

Amino Acids

70.86

Weight (kDa)

5.53

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POB3_N	PF17292	3 - 83	5.9e-20	POB3-like N-terminal PH domain
SSrecog	PF03531	91 - 159	2e-24	Structure-specific recognition protein (SSRP1)
PH1_SSRP1-like	PF21103	192 - 321	3e-50	SSRP1 PH domain
Rttp106-like_middle	PF08512	334 - 425	7.3e-22	Histone chaperone Rttp106-like, middle domain
HMG_box_2	PF09011	542 - 612	2.9e-16	HMG-box domain
HMG_box	PF00505	545 - 613	2.7e-21	HMG (high mobility group) box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28730
fragaria_vesca	FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210 FvH4_6g49210
malus_domestica	MD09G1047500.v1.1 MD17G1047600.v1.1
prunus_persica	Prupe.3G271500_v2.0.a1 Prupe.3G271500_v2.0.a1
pyrus_communis	pycom111g03840 pycom17g04240
rosa_chinensis	RchiOBHm_Chr2g0169081
rosa_laevigata	RLG00000021832
rosa_multiflora	Rmu_sc0004901.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082480
rosa_rugosa	Rorug02G0536700
rosa_samantha	Rh2AG608600 Rh2BG621500 Rh2CG590200 Rh2DG632100
rosa_wichuraiana	Rw2G050460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AasI	GACNNNNNNGTC	1 cut(s)	197
AatII	GACGTC	1 cut(s)	396
AccB1I	GGYRCC	2 cut(s)	953, 1546
AccII	CGCG	1 cut(s)	1362
AciI	CCGC	4 cut(s)	655, 767, 982, 1763
AclWI	GGATC	3 cut(s)	758, 1616, 1629
AcsI	RAATTY	3 cut(s)	173, 684, 1118
AcuI	CTGAAG	2 cut(s)	362, 1047
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	4 cut(s)	167, 692, 878, 1293
AfiI	CCNNNNNNNGG	1 cut(s)	1704
AgsI	TTSAA	7 cut(s)	635, 682, 818, 836, 1319, 1536, 1542
AjnI	CCWGG	4 cut(s)	34, 192, 970, 1520
AjuI	GAANNNNNNNTTGG	2 cut(s)	1435, 1467
AluBI	AGCT	7 cut(s)	22, 259, 376, 987, 1025, 1059, 1376
AluI	AGCT	7 cut(s)	22, 259, 376, 987, 1025, 1059, 1376
Alw26I	GTCTC	3 cut(s)	183, 367, 1311
AlwI	GGATC	3 cut(s)	758, 1616, 1629
Ama87I	CYCGRG	1 cut(s)	1703
AoxI	GGCC	2 cut(s)	16, 1791
ApeKI	GCWGC	1 cut(s)	984
ApoI	RAATTY	3 cut(s)	173, 684, 1118
AspS9I	GGNCC	4 cut(s)	16, 121, 1589, 1792
AsuC2I	CCSGG	3 cut(s)	15, 1704, 1705
AsuHPI	GGTGA	5 cut(s)	388, 509, 581, 919, 1391
AvaI	CYCGRG	1 cut(s)	1703
AvaII	GGWCC	2 cut(s)	121, 1589
BamHI	GGATCC	1 cut(s)	1621
BanI	GGYRCC	2 cut(s)	953, 1546
BanII	GRGCYC	1 cut(s)	1521
BbsI	GAAGAC	2 cut(s)	1005, 1035
BbvI	GCAGC	1 cut(s)	996
BccI	CCATC	9 cut(s)	152, 445, 541, 989, 1292, 1424, 1558, 1580, 1666
BceAI	ACGGC	1 cut(s)	886
BciT130I	CCWGG	4 cut(s)	36, 194, 972, 1522
BciVI	GTATCC	1 cut(s)	804
BcnI	CCSGG	3 cut(s)	15, 1704, 1705
BcoDI	GTCTC	3 cut(s)	183, 367, 1311
BfaI	CTAG	1 cut(s)	1476
BfuI	GTATCC	1 cut(s)	804
BisI	GCNGC	1 cut(s)	985
BlsI	GCNGC	1 cut(s)	986
Bme1390I	CCNGG	7 cut(s)	15, 36, 194, 972, 1522, 1704, 1705
Bme18I	GGWCC	2 cut(s)	121, 1589
BmeT110I	CYCGRG	1 cut(s)	1703
BmgT120I	GGNCC	4 cut(s)	16, 121, 1589, 1792
BmiI	GGNNCC	5 cut(s)	123, 955, 1518, 1548, 1623
BmrFI	CCNGG	7 cut(s)	15, 36, 194, 972, 1522, 1704, 1705
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	4 cut(s)	565, 1273, 1324, 1462
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	1005, 1035
BpmI	CTGGAG	3 cut(s)	447, 585, 1158
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	1272
BpuMI	CCSGG	3 cut(s)	15, 1704, 1705
BsaBI	GATNNNNATC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	614, 971, 1520, 1702, 1703
Bsc4I	CCNNNNNNNGG	1 cut(s)	1704
Bse1I	ACTGG	4 cut(s)	208, 284, 430, 849
Bse3DI	GCAATG	1 cut(s)	1650
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	4 cut(s)	36, 194, 972, 1522
BseDI	CCNNGG	5 cut(s)	614, 971, 1520, 1702, 1703
BseGI	GGATG	8 cut(s)	31, 120, 202, 421, 1408, 1432, 1726, 1825
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	1704
BseMI	GCAATG	1 cut(s)	1650
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	4 cut(s)	208, 284, 430, 849
BseRI	GAGGAG	3 cut(s)	263, 1299, 1781
BseXI	GCAGC	1 cut(s)	996
Bsh1236I	CGCG	1 cut(s)	1362
BshFI	GGCC	2 cut(s)	18, 1793
BshNI	GGYRCC	2 cut(s)	953, 1546
BsiHKCI	CYCGRG	1 cut(s)	1703
BsiSI	CCGG	2 cut(s)	14, 1704
BslFI	GGGAC	3 cut(s)	107, 921, 1754
BslI	CCNNNNNNNGG	1 cut(s)	1704
BsmAI	GTCTC	3 cut(s)	183, 367, 1311
BsmFI	GGGAC	3 cut(s)	107, 921, 1754
BsnI	GGCC	2 cut(s)	18, 1793
Bso31I	GGTCTC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	1703
Bsp1286I	GDGCHC	1 cut(s)	1521
Bsp143I	GATC	3 cut(s)	763, 1162, 1621
BspACI	CCGC	4 cut(s)	655, 767, 982, 1763
BspANI	GGCC	2 cut(s)	18, 1793
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	1362
BspHI	TCATGA	3 cut(s)	916, 1096, 1269
BspLI	GGNNCC	5 cut(s)	123, 955, 1518, 1548, 1623
BspPI	GGATC	3 cut(s)	758, 1616, 1629
BspT107I	GGYRCC	2 cut(s)	953, 1546
BspTNI	GGTCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	1650
BsrI	ACTGG	4 cut(s)	208, 284, 430, 849
BssECI	CCNNGG	5 cut(s)	614, 971, 1520, 1702, 1703
BssMI	GATC	3 cut(s)	763, 1162, 1621
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	614
Bst2UI	CCWGG	4 cut(s)	36, 194, 972, 1522
Bst4CI	ACNGT	1 cut(s)	792
Bst6I	CTCTTC	4 cut(s)	1314, 1317, 1392, 1723
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	20, 669, 1506
BstDEI	CTNAG	4 cut(s)	400, 519, 723, 1276
BstF5I	GGATG	8 cut(s)	31, 120, 202, 421, 1408, 1432, 1726, 1825
BstFNI	CGCG	1 cut(s)	1362
BstKTI	GATC	3 cut(s)	766, 1165, 1624
BstMAI	GTCTC	3 cut(s)	183, 367, 1311
BstMBI	GATC	3 cut(s)	763, 1162, 1621
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNI	CCWGG	4 cut(s)	36, 194, 972, 1522
BstSCI	CCNGG	7 cut(s)	13, 34, 192, 970, 1520, 1702, 1703
BstUI	CGCG	1 cut(s)	1362
BstV1I	GCAGC	1 cut(s)	996
BstV2I	GAAGAC	2 cut(s)	1005, 1035
BstX2I	RGATCY	1 cut(s)	1621
BstXI	CCANNNNNNTGG	1 cut(s)	1867
BstYI	RGATCY	1 cut(s)	1621
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	18, 1793
BtgZI	GCGATG	1 cut(s)	870
BtsCI	GGATG	8 cut(s)	31, 120, 202, 421, 1408, 1432, 1726, 1825
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	6 cut(s)	201, 274, 423, 703, 788, 1016
Cac8I	GCNNGC	3 cut(s)	20, 669, 1506
CciI	TCATGA	3 cut(s)	916, 1096, 1269
Cfr13I	GGNCC	4 cut(s)	16, 121, 1589, 1792
Cfr9I	CCCGGG	1 cut(s)	1703
Csp6I	GTAC	4 cut(s)	166, 691, 877, 1292
CviQI	GTAC	4 cut(s)	166, 691, 877, 1292
DdeI	CTNAG	4 cut(s)	400, 519, 723, 1276
DpnI	GATC	3 cut(s)	765, 1164, 1623
DpnII	GATC	3 cut(s)	763, 1162, 1621
DraI	TTTAAA	2 cut(s)	867, 1254
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	4 cut(s)	1314, 1317, 1392, 1723
EarI	CTCTTC	4 cut(s)	1314, 1317, 1392, 1723
EciI	GGCGGA	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	1521
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	121, 1589
Eco57I	CTGAAG	2 cut(s)	362, 1047
Eco88I	CYCGRG	1 cut(s)	1703
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	4 cut(s)	34, 192, 970, 1520
EcoT14I	CCWWGG	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	1155
EcoT38I	GRGCYC	1 cut(s)	1521
ErhI	CCWWGG	1 cut(s)	614
FalI	AAGNNNNNCTT	2 cut(s)	1046, 1078
FaqI	GGGAC	3 cut(s)	107, 921, 1754
FauNDI	CATATG	1 cut(s)	1780
Fnu4HI	GCNGC	1 cut(s)	985
FokI	GGATG	8 cut(s)	18, 127, 209, 428, 1415, 1439, 1733, 1832
FriOI	GRGCYC	1 cut(s)	1521
Fsp4HI	GCNGC	1 cut(s)	985
FspBI	CTAG	1 cut(s)	1476
GluI	GCNGC	1 cut(s)	985
GsuI	CTGGAG	3 cut(s)	447, 585, 1158
HaeIII	GGCC	2 cut(s)	18, 1793
HapII	CCGG	2 cut(s)	14, 1704
Hin1I	GRCGYC	1 cut(s)	393
HincII	GTYRAC	2 cut(s)	325, 1345
HindII	GTYRAC	2 cut(s)	325, 1345
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	8 cut(s)	10, 326, 443, 505, 1451, 1466, 1871, 1883
HpaII	CCGG	2 cut(s)	14, 1704
HphI	GGTGA	5 cut(s)	388, 509, 581, 919, 1391
Hpy166II	GTNNAC	4 cut(s)	325, 842, 927, 1345
Hpy188I	TCNGA	5 cut(s)	150, 1175, 1215, 1471, 1888
Hpy8I	GTNNAC	4 cut(s)	325, 842, 927, 1345
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	5 cut(s)	112, 728, 1417, 1542, 1612
HpyCH4III	ACNGT	1 cut(s)	792
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	7 cut(s)	602, 661, 811, 940, 1153, 1631, 1712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	4 cut(s)	400, 519, 723, 1276
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	763, 1162, 1621
LmnI	GCTCC	2 cut(s)	428, 1516
Lsp1109I	GCAGC	1 cut(s)	996
LweI	GCATC	4 cut(s)	565, 1273, 1324, 1462
MaeI	CTAG	1 cut(s)	1476
MaeII	ACGT	1 cut(s)	393
MalI	GATC	3 cut(s)	765, 1164, 1623
MboI	GATC	3 cut(s)	763, 1162, 1621
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	1621
MhlI	GDGCHC	1 cut(s)	1521
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	3 cut(s)	82, 504, 1466
Mph1103I	ATGCAT	1 cut(s)	1155
MseI	TTAA	6 cut(s)	153, 209, 296, 866, 1179, 1253
MslI	CAYNNNNRTG	3 cut(s)	414, 545, 1865
MspA1I	CMGCKG	2 cut(s)	987, 1763
MspI	CCGG	2 cut(s)	14, 1704
MspR9I	CCNGG	7 cut(s)	15, 36, 194, 972, 1522, 1704, 1705
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	4 cut(s)	36, 194, 972, 1522
MvnI	CGCG	1 cut(s)	1362
MwoI	GCNNNNNNNGC	1 cut(s)	373
NciI	CCSGG	3 cut(s)	15, 1704, 1705
NdeI	CATATG	1 cut(s)	1780
NdeII	GATC	3 cut(s)	763, 1162, 1621
NlaIV	GGNNCC	5 cut(s)	123, 955, 1518, 1548, 1623
NmuCI	GTSAC	5 cut(s)	106, 199, 394, 530, 583
NsiI	ATGCAT	1 cut(s)	1155
PagI	TCATGA	3 cut(s)	916, 1096, 1269
PfeI	GAWTC	7 cut(s)	10, 443, 505, 1451, 1466, 1871, 1883
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	986
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	4 cut(s)	34, 192, 970, 1520
PspGI	CCWGG	4 cut(s)	34, 192, 970, 1520
PspN4I	GGNNCC	5 cut(s)	123, 955, 1518, 1548, 1623
PspPI	GGNCC	4 cut(s)	16, 121, 1589, 1792
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	1621
PvuII	CAGCTG	1 cut(s)	987
RsaI	GTAC	4 cut(s)	167, 692, 878, 1293
RsaNI	GTAC	4 cut(s)	166, 691, 877, 1292
RseI	CAYNNNNRTG	3 cut(s)	414, 545, 1865
SaqAI	TTAA	6 cut(s)	153, 209, 296, 866, 1179, 1253
SatI	GCNGC	1 cut(s)	985
Sau3AI	GATC	3 cut(s)	763, 1162, 1621
Sau96I	GGNCC	4 cut(s)	16, 121, 1589, 1792
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	7 cut(s)	15, 36, 194, 972, 1522, 1704, 1705
SduI	GDGCHC	1 cut(s)	1521
SfaNI	GCATC	4 cut(s)	565, 1273, 1324, 1462
SinI	GGWCC	2 cut(s)	121, 1589
SmaI	CCCGGG	1 cut(s)	1705
SmiMI	CAYNNNNRTG	3 cut(s)	414, 545, 1865
SmlI	CTYRAG	1 cut(s)	1287
SmoI	CTYRAG	1 cut(s)	1287
SsiI	CCGC	4 cut(s)	655, 767, 982, 1763
SspMI	CTAG	1 cut(s)	1476
StyD4I	CCNGG	7 cut(s)	13, 34, 192, 970, 1520, 1702, 1703
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	1 cut(s)	792
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	3 cut(s)	187, 545, 1578
TatI	WGTACW	3 cut(s)	165, 690, 876
TfiI	GAWTC	7 cut(s)	10, 443, 505, 1451, 1466, 1871, 1883
Tru1I	TTAA	6 cut(s)	153, 209, 296, 866, 1179, 1253
Tru9I	TTAA	6 cut(s)	153, 209, 296, 866, 1179, 1253
TscAI	CASTG	6 cut(s)	208, 274, 430, 703, 795, 1023
TseFI	GTSAC	5 cut(s)	106, 199, 394, 530, 583
TseI	GCWGC	1 cut(s)	984
Tsp45I	GTSAC	5 cut(s)	106, 199, 394, 530, 583
TspGWI	ACGGA	4 cut(s)	260, 764, 1047, 1733
TspMI	CCCGGG	1 cut(s)	1703
TspRI	CASTG	6 cut(s)	208, 274, 430, 703, 795, 1023
VpaK11BI	GGWCC	2 cut(s)	121, 1589
XapI	RAATTY	3 cut(s)	173, 684, 1118
XcmI	CCANNNNNNNNNTGG	2 cut(s)	200, 230
XmaI	CCCGGG	1 cut(s)	1703
XspI	CTAG	1 cut(s)	1476
ZraI	GACGTC	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.