MD09G1097800.v1.1

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011246
Physical Location & Seq
Forward (+)
7114083 .. 7115996
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1097800.v1.1.491

Sequence Viewer

Length: 993 bp
ATGTCATCATTTCTTCCCACCTCCTCTCTCACATTCTTCCTCCTCCTCTTATTAACATCCAGCTTCCACATTTCCTTCGCCGGTCTACTCGCCGAACCTGTGACCGGTAACCCCCAGCCGCTCAAACCAGGGGAAAACTCCACTCCCAACACTGTCCCGGCCCTCCCAACCCAGAACCCGACCCAGAACCCTATCCAGACCTGCCACCTTGACCTCTCCGCTGAGCTCTTCGGCGGCGTCAGCCAAGCATGCGGCCGAAACCTCGACCGGAGCCGATGCTGCCCTGTTCTAGCCGCCTGGCTCTTCGCCGCCCACGCCAGATCAGCCCTTGAGCTCCCCTCCTCGGCTCCGGCTCCGTCGGCGGTGCTCGACCAGCCGATGATGCCGGACGACTCGCAGAAGTGCGTCAACTCGCTGCAATCCTCGCTCGTCAACCGGAACATCCGGATTCCTCAACCCAACGCCAGCTGCGACGCCGTTCTGTGCTTCTGCGGAATCCGGCTCCACCAGATCGGATCCCTCAGCTGCCCCGCCGCCTTCAACGTGTCGCAAGGGTTCCACAACGCCACCCCCACCGCCGCCCTCAGGAATCTCGAGAAGAACTGCCGCAACTCTTCGTACTCCGGCTGCACCAAGTGCCTTGGCGCTGTCCAGAAGCTCAAGGGAGGGAGCAAGAACGGAACGGCGGGGGACAGGAGCACGAGCGAGAGAGCGAACAAGATGTTCAACCGTGACTGCCAGCTCATGGGGCTGACGTGGCTCCTCGCCCGGAACAAAACGGCGTACATTCCGACCGTTTCCGCCGTTCTGCGAGCCATAATGTACAGTGCGCACCCGCCGCACGAGAACATGTGTAGCCCGGACCAGGAGAACATGCCGCTTGCCGTCGATTCGCTGCAGATCGAGAAGGGGCAAGGGTTCGCCACATCATCGCCGTCCATTTTGTTATTTCCGATCCTGCCCCTGATCATTTGGGCGTCTCTGTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

35.37

Weight (kDa)

8.54

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28100
fragaria_vesca FvH4_6g44390
malus_domestica MD09G1097800.v1.1 MD17G1086100.v1.1
prunus_persica Prupe.3G228400_v2.0.a1
pyrus_communis pycom09g02190 pycom17g08360
rosa_chinensis RchiOBHm_Chr2g0161331 RchiOBHm_Chr2g0161381
rosa_laevigata RLG00000021280
rosa_multiflora Rmu_co8294437.1_g000001 Rmu_ssc0000196.1_g000002
rosa_roxburghii Rroxscaffold_2G00088890
rosa_rugosa Rorug02G0488500
rosa_samantha Rh2AG555000 Rh2BG568200 Rh2CG538700 Rh2CG538800 Rh2DG577900
rosa_wichuraiana Rw2G045920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 831
Acc36I ACCTGC 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 745
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 444
AclWI GGATC 3 cut(s) 510, 523, 949
AcoI YGGCCR 1 cut(s) 253
AcyI GRCGYC 3 cut(s) 237, 474, 977
AdeI CACNNNGTG 1 cut(s) 636
AfaI GTAC 3 cut(s) 620, 785, 824
AfiI CCNNNNNNNGG 5 cut(s) 104, 343, 585, 745, 865
AflIII ACRYGT 2 cut(s) 543, 849
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 541, 727
AjiI CACGTC 1 cut(s) 756
AjnI CCWGG 3 cut(s) 127, 296, 864
AluBI AGCT 7 cut(s) 63, 226, 334, 468, 525, 658, 742
AluI AGCT 7 cut(s) 63, 226, 334, 468, 525, 658, 742
Alw21I GWGCWC 4 cut(s) 228, 336, 369, 701
Alw26I GTCTC 1 cut(s) 984
AlwI GGATC 3 cut(s) 510, 523, 949
Ama87I CYCGRG 1 cut(s) 593
Aor13HI TCCGGA 1 cut(s) 444
AoxI GGCC 2 cut(s) 159, 253
ApeKI GCWGC 6 cut(s) 279, 415, 468, 525, 627, 895
AsiGI ACCGGT 1 cut(s) 104
AspLEI GCGC 2 cut(s) 647, 832
AspS9I GGNCC 2 cut(s) 160, 862
AsuC2I CCSGG 3 cut(s) 158, 769, 860
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 1 cut(s) 862
AxyI CCTNAGG 1 cut(s) 584
BamHI GGATCC 1 cut(s) 515
BanII GRGCYC 2 cut(s) 228, 336
BauI CACGAG 2 cut(s) 700, 842
Bbv12I GWGCWC 4 cut(s) 228, 336, 369, 701
BbvCI CCTCAGC 1 cut(s) 521
BbvI GCAGC 6 cut(s) 266, 402, 455, 512, 614, 882
BceAI ACGGC 6 cut(s) 461, 699, 788, 795, 869, 919
BciT130I CCWGG 3 cut(s) 129, 298, 866
BclI TGATCA 1 cut(s) 966
BcnI CCSGG 3 cut(s) 158, 769, 860
BcoDI GTCTC 1 cut(s) 984
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 648
BfuAI ACCTGC 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 222
Bme1390I CCNGG 6 cut(s) 129, 158, 298, 769, 860, 866
Bme18I GGWCC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 593
BmgBI CACGTC 1 cut(s) 756
BmgT120I GGNCC 2 cut(s) 160, 862
BmiI GGNNCC 7 cut(s) 272, 348, 354, 503, 517, 557, 761
BmrFI CCNGG 6 cut(s) 129, 158, 298, 769, 860, 866
BmsI GCATC 2 cut(s) 266, 372
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bpu10I CCTNAGC 1 cut(s) 521
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 350, 644
BpuMI CCSGG 3 cut(s) 158, 769, 860
BsaHI GRCGYC 3 cut(s) 237, 474, 977
BsaJI CCNNGG 3 cut(s) 128, 342, 640
BsaWI WCCGGW 4 cut(s) 104, 267, 435, 444
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 343, 585, 745, 865
Bse118I RCCGGY 2 cut(s) 80, 104
Bse21I CCTNAGG 1 cut(s) 584
BseAI TCCGGA 1 cut(s) 444
BseBI CCWGG 3 cut(s) 129, 298, 866
BseDI CCNNGG 3 cut(s) 128, 342, 640
BseGI GGATG 2 cut(s) 56, 441
BseLI CCNNNNNNNGG 5 cut(s) 104, 343, 585, 745, 865
BseMII CTCAG 3 cut(s) 213, 535, 598
BseRI GAGGAG 5 cut(s) 13, 32, 35, 331, 752
BseX3I CGGCCG 1 cut(s) 253
BseXI GCAGC 6 cut(s) 266, 402, 455, 512, 614, 882
BseYI CCCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 613
Bsh1285I CGRYCG 3 cut(s) 256, 268, 795
BshFI GGCC 2 cut(s) 161, 255
BshTI ACCGGT 1 cut(s) 104
BsiEI CGRYCG 3 cut(s) 256, 268, 795
BsiHKAI GWGCWC 4 cut(s) 228, 336, 369, 701
BsiHKCI CYCGRG 1 cut(s) 593
BslFI GGGAC 2 cut(s) 140, 704
BslI CCNNNNNNNGG 5 cut(s) 104, 343, 585, 745, 865
BsmAI GTCTC 1 cut(s) 984
BsmBI CGTCTC 1 cut(s) 984
BsmFI GGGAC 2 cut(s) 140, 704
BsnI GGCC 2 cut(s) 161, 255
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 4 cut(s) 228, 336, 369, 701
Bsp13I TCCGGA 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 822
Bsp143I GATC 6 cut(s) 320, 510, 515, 900, 954, 966
Bsp1720I GCTNAGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 161, 255
BspCNI CTCAG 3 cut(s) 214, 534, 597
BspEI TCCGGA 1 cut(s) 444
BspLI GGNNCC 7 cut(s) 272, 348, 354, 503, 517, 557, 761
BspMAI CTGCAG 1 cut(s) 900
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 3 cut(s) 510, 523, 949
BspQI GCTCTTC 2 cut(s) 233, 308
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 2 cut(s) 80, 104
BsrGI TGTACA 1 cut(s) 822
BssAI RCCGGY 2 cut(s) 80, 104
BssECI CCNNGG 3 cut(s) 128, 342, 640
BssMI GATC 6 cut(s) 320, 510, 515, 900, 954, 966
BssNI GRCGYC 3 cut(s) 237, 474, 977
BssSI CACGAG 2 cut(s) 700, 842
BssT1I CCWWGG 1 cut(s) 640
Bst2BI CACGAG 2 cut(s) 700, 842
Bst2UI CCWGG 3 cut(s) 129, 298, 866
Bst4CI ACNGT 4 cut(s) 154, 731, 796, 827
Bst6I CTCTTC 3 cut(s) 233, 308, 619
BstACI GRCGYC 3 cut(s) 237, 474, 977
BstAPI GCANNNNNTGC 1 cut(s) 636
BstAUI TGTACA 1 cut(s) 822
BstC8I GCNNGC 5 cut(s) 250, 466, 740, 813, 882
BstDEI CTNAG 3 cut(s) 222, 521, 584
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 2 cut(s) 56, 441
BstH2I RGCGCY 1 cut(s) 648
BstHHI GCGC 2 cut(s) 647, 832
BstKTI GATC 6 cut(s) 323, 513, 518, 903, 957, 969
BstMAI GTCTC 1 cut(s) 984
BstMBI GATC 6 cut(s) 320, 510, 515, 900, 954, 966
BstMCI CGRYCG 3 cut(s) 256, 268, 795
BstNI CCWGG 3 cut(s) 129, 298, 866
BstNSI RCATGY 3 cut(s) 252, 853, 877
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 6 cut(s) 127, 156, 296, 767, 858, 864
BstSFI CTRYAG 1 cut(s) 896
BstV1I GCAGC 6 cut(s) 266, 402, 455, 512, 614, 882
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BstZI CGGCCG 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 2 cut(s) 161, 255
BtgZI GCGATG 1 cut(s) 915
BtrI CACGTC 1 cut(s) 756
BtsCI GGATG 2 cut(s) 56, 441
BtsIMutI CAGTG 2 cut(s) 150, 832
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 5 cut(s) 250, 466, 740, 813, 882
CfoI GCGC 2 cut(s) 647, 832
Cfr10I RCCGGY 2 cut(s) 80, 104
Cfr13I GGNCC 2 cut(s) 160, 862
CseI GACGC 4 cut(s) 226, 394, 482, 966
Csp6I GTAC 3 cut(s) 619, 784, 823
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 4 cut(s) 249, 745, 850, 874
CviQI GTAC 3 cut(s) 619, 784, 823
DdeI CTNAG 3 cut(s) 222, 521, 584
DpnI GATC 6 cut(s) 322, 512, 517, 902, 956, 968
DpnII GATC 6 cut(s) 320, 510, 515, 900, 954, 966
DraIII CACNNNGTG 1 cut(s) 636
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
Eam1104I CTCTTC 3 cut(s) 233, 308, 619
EarI CTCTTC 3 cut(s) 233, 308, 619
EciI GGCGGA 1 cut(s) 790
Ecl136II GAGCTC 2 cut(s) 226, 334
EclXI CGGCCG 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 2 cut(s) 228, 336
Eco47I GGWCC 1 cut(s) 862
Eco52I CGGCCG 1 cut(s) 253
Eco53kI GAGCTC 2 cut(s) 226, 334
Eco81I CCTNAGG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 593
Eco91I GGTNACC 1 cut(s) 107
EcoICRI GAGCTC 2 cut(s) 226, 334
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 127, 296, 864
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 2 cut(s) 228, 336
ErhI CCWWGG 1 cut(s) 640
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 4 cut(s) 252, 748, 853, 877
FaiI YATR 5 cut(s) 250, 746, 818, 851, 875
FaqI GGGAC 2 cut(s) 140, 704
FatI CATG 4 cut(s) 248, 744, 849, 873
FauI CCCGC 3 cut(s) 538, 679, 843
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 85
FokI GGATG 2 cut(s) 43, 428
FriOI GRGCYC 2 cut(s) 228, 336
FspAI RTGCGCAY 1 cut(s) 831
FspBI CTAG 1 cut(s) 290
FspI TGCGCA 1 cut(s) 831
GlaI GCGC 2 cut(s) 646, 831
GsaI CCCAGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 648
HaeIII GGCC 2 cut(s) 161, 255
HgaI GACGC 4 cut(s) 226, 394, 482, 966
HhaI GCGC 2 cut(s) 647, 832
Hin1I GRCGYC 3 cut(s) 237, 474, 977
Hin1II CATG 4 cut(s) 252, 748, 853, 877
Hin6I GCGC 2 cut(s) 645, 830
HinP1I GCGC 2 cut(s) 645, 830
HincII GTYRAC 2 cut(s) 409, 433
HindII GTYRAC 2 cut(s) 409, 433
HinfI GANTC 5 cut(s) 392, 448, 495, 589, 890
Hpy166II GTNNAC 3 cut(s) 86, 409, 433
Hpy188I TCNGA 3 cut(s) 515, 792, 954
Hpy188III TCNNGA 7 cut(s) 196, 445, 586, 593, 595, 652, 904
Hpy8I GTNNAC 3 cut(s) 86, 409, 433
Hpy99I CGWCG 3 cut(s) 361, 476, 890
HpyAV CCTTC 3 cut(s) 85, 547, 901
HpyCH4III ACNGT 4 cut(s) 154, 731, 796, 827
HpyCH4IV ACGT 2 cut(s) 543, 755
HpyCH4V TGCA 3 cut(s) 418, 630, 898
HpyF3I CTNAG 3 cut(s) 222, 521, 584
HpySE526I ACGT 2 cut(s) 543, 755
Hsp92I GRCGYC 3 cut(s) 237, 474, 977
Hsp92II CATG 4 cut(s) 252, 748, 853, 877
HspAI GCGC 2 cut(s) 645, 830
Kpn2I TCCGGA 1 cut(s) 444
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 6 cut(s) 320, 510, 515, 900, 954, 966
LguI GCTCTTC 2 cut(s) 233, 308
LmnI GCTCC 8 cut(s) 270, 339, 352, 358, 507, 669, 696, 765
Lsp1109I GCAGC 6 cut(s) 266, 402, 455, 512, 614, 882
LweI GCATC 2 cut(s) 266, 372
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 543, 755
MaeIII GTNAC 3 cut(s) 100, 107, 731
MalI GATC 6 cut(s) 322, 512, 517, 902, 956, 968
MbiI CCGCTC 1 cut(s) 121
MboI GATC 6 cut(s) 320, 510, 515, 900, 954, 966
MboII GAAGA 6 cut(s) 5, 28, 220, 295, 606, 610
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 4 cut(s) 228, 336, 369, 701
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 815
MroI TCCGGA 1 cut(s) 444
MseI TTAA 1 cut(s) 53
MspA1I CMGCKG 3 cut(s) 221, 468, 525
MspR9I CCNGG 6 cut(s) 129, 158, 298, 769, 860, 866
MvaI CCWGG 3 cut(s) 129, 298, 866
NciI CCSGG 3 cut(s) 158, 769, 860
NdeII GATC 6 cut(s) 320, 510, 515, 900, 954, 966
NlaIII CATG 4 cut(s) 252, 748, 853, 877
NlaIV GGNNCC 7 cut(s) 272, 348, 354, 503, 517, 557, 761
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 100, 731
NsbI TGCGCA 1 cut(s) 831
NspI RCATGY 3 cut(s) 252, 853, 877
PaeI GCATGC 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 593
PciI ACATGT 1 cut(s) 849
PciSI GCTCTTC 2 cut(s) 233, 308
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PfeI GAWTC 4 cut(s) 448, 495, 589, 890
PflMI CCANNNNNTGG 1 cut(s) 745
PinAI ACCGGT 1 cut(s) 104
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PscI ACATGT 1 cut(s) 849
Psp124BI GAGCTC 2 cut(s) 228, 336
Psp6I CCWGG 3 cut(s) 127, 296, 864
PspEI GGTNACC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 3 cut(s) 127, 296, 864
PspN4I GGNNCC 7 cut(s) 272, 348, 354, 503, 517, 557, 761
PspPI GGNCC 2 cut(s) 160, 862
PstI CTGCAG 1 cut(s) 900
PsuI RGATCY 1 cut(s) 515
PvuII CAGCTG 2 cut(s) 468, 525
RsaI GTAC 3 cut(s) 620, 785, 824
RsaNI GTAC 3 cut(s) 619, 784, 823
SacI GAGCTC 2 cut(s) 228, 336
SapI GCTCTTC 2 cut(s) 233, 308
SaqAI TTAA 1 cut(s) 53
Sau3AI GATC 6 cut(s) 320, 510, 515, 900, 954, 966
Sau96I GGNCC 2 cut(s) 160, 862
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 6 cut(s) 129, 158, 298, 769, 860, 866
SduI GDGCHC 4 cut(s) 228, 336, 369, 701
SfaNI GCATC 2 cut(s) 266, 372
SfcI CTRYAG 1 cut(s) 896
Sfr274I CTCGAG 1 cut(s) 593
SinI GGWCC 1 cut(s) 862
SlaI CTCGAG 1 cut(s) 593
SmlI CTYRAG 3 cut(s) 329, 593, 659
SmoI CTYRAG 3 cut(s) 329, 593, 659
SphI GCATGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 2 cut(s) 228, 336
StyD4I CCNGG 6 cut(s) 127, 156, 296, 767, 858, 864
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 4 cut(s) 154, 731, 796, 827
TaiI ACGT 2 cut(s) 546, 758
TaqI TCGA 5 cut(s) 264, 369, 594, 888, 903
TatI WGTACW 1 cut(s) 822
TfiI GAWTC 4 cut(s) 448, 495, 589, 890
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 2 cut(s) 157, 832
TseFI GTSAC 2 cut(s) 100, 731
TseI GCWGC 6 cut(s) 279, 415, 468, 525, 627, 895
Tsp45I GTSAC 2 cut(s) 100, 731
TspGWI ACGGA 2 cut(s) 345, 693
TspRI CASTG 2 cut(s) 157, 832
Van91I CCANNNNNTGG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 862
XceI RCATGY 3 cut(s) 252, 853, 877
XhoI CTCGAG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.