RchiOBHm_Chr2g0161331

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011246
Physical Location & Seq
Reverse (-)
77258840 .. 77262990
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52969

Sequence Viewer

Length: 690 bp
ATGAATGTATTGCGCAGAGCCGTGAGGTCAGCTCTGGAAATCTCCTCCGCTCCTGCTCCTTCCGCCGGGGGCGACCTTCCGATGATGCCGGACGACGCGCAGAAGTGCGTGAACTCTCTCCAGACCTCGCTCCTCAGCCGAAACATCCGGATCCCACAGCCGAACGCCACGTGTGACGCCATACTCTGCTTCTTGGGATCAGGCTCCACCAGATCAGCTCCCTCAGCTGTCCGGCGGCGTTCAACGTCTCCGGGTTCCACAACGCCACCCCTACCGCCGCGGTCAAGAATCTCGAAAAGAACTGCCGCAACTCTTCCTACACTGGCTGCACCAAATGCCTCGGCGCCCTCCAGAAGGTCACTGAAGGGCGGGACGAGCAAGAACGGAACAACGAGGGACAAGTGCACGAGCGAGAGGGTGGGCAAGATGTTCGACCGGGACTGCCAGCTCATGGGGCTGACGTGGCTGCTGGCAAAGAACAAGACGGCCCACATTCCGACCGTCTCCGCCGTGTTGCGCGCCATAATGTACAGCGCTCACCCGCCGCACGAGAACACGTGCAGCCCGGACCAGGAGAACATGCCGCTGGCCGTTGATTCCTTGCAGTTTGACAAGTCGTCATCGCCGGCGTCGGTGTCTTTGTTTCCGGTTGTGCCCCTAATCACGGTTTTGGTTTCTCTGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.33

Weight (kDa)

10.19

Isoelectric Point (pI)

75.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28100
fragaria_vesca FvH4_6g44390
malus_domestica MD09G1097800.v1.1 MD17G1086100.v1.1
prunus_persica Prupe.3G228400_v2.0.a1
pyrus_communis pycom09g02190 pycom17g08360
rosa_chinensis RchiOBHm_Chr2g0161331 RchiOBHm_Chr2g0161381
rosa_laevigata RLG00000021280
rosa_multiflora Rmu_co8294437.1_g000001 Rmu_ssc0000196.1_g000002
rosa_roxburghii Rroxscaffold_2G00088890
rosa_rugosa Rorug02G0488500
rosa_samantha Rh2AG555000 Rh2BG568200 Rh2CG538700 Rh2CG538800 Rh2DG577900
rosa_wichuraiana Rw2G045920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 50
AccII CGCG 3 cut(s) 98, 280, 519
AccIII TCCGGA 1 cut(s) 147
AclWI GGATC 3 cut(s) 145, 158, 205
AcoI YGGCCR 1 cut(s) 588
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 2 cut(s) 171, 558
AcyI GRCGYC 3 cut(s) 177, 344, 629
AfaI GTAC 1 cut(s) 530
AfeI AGCGCT 1 cut(s) 535
AfiI CCNNNNNNNGG 5 cut(s) 65, 354, 451, 571, 664
AflIII ACRYGT 2 cut(s) 170, 555
AgsI TTSAA 1 cut(s) 243
AhdI GACNNNNNGTC 1 cut(s) 616
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 4 cut(s) 32, 218, 227, 448
AluI AGCT 4 cut(s) 32, 218, 227, 448
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 2 cut(s) 252, 508
Alw44I GTGCAC 1 cut(s) 403
AlwI GGATC 3 cut(s) 145, 158, 205
Aor13HI TCCGGA 1 cut(s) 147
Aor51HI AGCGCT 1 cut(s) 535
AoxI GGCC 2 cut(s) 486, 588
ApaLI GTGCAC 1 cut(s) 403
ApeKI GCWGC 3 cut(s) 326, 466, 561
AspLEI GCGC 6 cut(s) 15, 100, 346, 519, 521, 536
AspS9I GGNCC 2 cut(s) 487, 568
AsuC2I CCSGG 4 cut(s) 67, 252, 437, 566
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 568
BaeGI GKGCMC 2 cut(s) 407, 657
BamHI GGATCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 343
BauI CACGAG 2 cut(s) 406, 548
BbrPI CACGTG 2 cut(s) 171, 558
Bbv12I GWGCWC 1 cut(s) 407
BbvCI CCTCAGC 2 cut(s) 134, 223
BbvI GCAGC 3 cut(s) 313, 453, 573
BceAI ACGGC 4 cut(s) 5, 494, 501, 575
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 4 cut(s) 67, 252, 437, 566
BcoDI GTCTC 2 cut(s) 252, 508
BfoI RGCGCY 2 cut(s) 347, 537
BisI GCNGC 8 cut(s) 236, 278, 306, 327, 467, 545, 562, 584
BlsI GCNGC 8 cut(s) 237, 279, 307, 328, 468, 546, 563, 585
Bme1390I CCNGG 5 cut(s) 67, 252, 437, 566, 572
Bme18I GGWCC 1 cut(s) 568
BmeRI GACNNNNNGTC 1 cut(s) 616
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 487, 568
BmiI GGNNCC 4 cut(s) 152, 205, 256, 345
BmrFI CCNGG 5 cut(s) 67, 252, 437, 566, 572
BmsI GCATC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpmI CTGGAG 2 cut(s) 104, 334
Bpu10I CCTNAGC 2 cut(s) 134, 223
BpuMI CCSGG 4 cut(s) 67, 252, 437, 566
BsaAI YACGTR 2 cut(s) 171, 558
BsaHI GRCGYC 3 cut(s) 177, 344, 629
BsaJI CCNNGG 3 cut(s) 66, 278, 339
BsaWI WCCGGW 2 cut(s) 147, 646
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 354, 451, 571, 664
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 1 cut(s) 327
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 3 cut(s) 66, 278, 339
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 65, 354, 451, 571, 664
BseMII CTCAG 2 cut(s) 148, 237
BseNI ACTGG 1 cut(s) 327
BsePI GCGCGC 1 cut(s) 517
BseRI GAGGAG 2 cut(s) 34, 122
BseSI GKGCMC 2 cut(s) 407, 657
BseXI GCAGC 3 cut(s) 313, 453, 573
BsgI GTGCAG 2 cut(s) 312, 580
Bsh1236I CGCG 3 cut(s) 98, 280, 519
Bsh1285I CGRYCG 2 cut(s) 436, 501
BshFI GGCC 2 cut(s) 488, 590
BshNI GGYRCC 1 cut(s) 343
BsiEI CGRYCG 2 cut(s) 436, 501
BsiHKAI GWGCWC 1 cut(s) 407
BsiSI CCGG 9 cut(s) 66, 89, 148, 232, 251, 436, 566, 626, 647
BslFI GGGAC 3 cut(s) 385, 410, 452
BslI CCNNNNNNNGG 5 cut(s) 65, 354, 451, 571, 664
BsmAI GTCTC 2 cut(s) 252, 508
BsmBI CGTCTC 2 cut(s) 252, 508
BsmFI GGGAC 3 cut(s) 385, 410, 452
BsnI GGCC 2 cut(s) 488, 590
Bsp1286I GDGCHC 2 cut(s) 407, 657
Bsp13I TCCGGA 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 150, 197, 212
BspANI GGCC 2 cut(s) 488, 590
BspCNI CTCAG 2 cut(s) 147, 236
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 3 cut(s) 98, 280, 519
BspLI GGNNCC 4 cut(s) 152, 205, 256, 345
BspPI GGATC 3 cut(s) 145, 158, 205
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 625
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 3 cut(s) 66, 278, 339
BssHII GCGCGC 1 cut(s) 517
BssMI GATC 3 cut(s) 150, 197, 212
BssNI GRCGYC 3 cut(s) 177, 344, 629
BssSI CACGAG 2 cut(s) 406, 548
Bst2BI CACGAG 2 cut(s) 406, 548
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 2 cut(s) 502, 667
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 3 cut(s) 177, 344, 629
BstAPI GCANNNNNTGC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 2 cut(s) 171, 558
BstC8I GCNNGC 5 cut(s) 446, 471, 519, 588, 627
BstDEI CTNAG 2 cut(s) 134, 223
BstDSI CCRYGG 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 3 cut(s) 98, 280, 519
BstH2I RGCGCY 2 cut(s) 347, 537
BstHHI GCGC 6 cut(s) 15, 100, 346, 519, 521, 536
BstKTI GATC 3 cut(s) 153, 200, 215
BstMAI GTCTC 2 cut(s) 252, 508
BstMBI GATC 3 cut(s) 150, 197, 212
BstMCI CGRYCG 2 cut(s) 436, 501
BstMWI GCNNNNNNNGC 6 cut(s) 62, 224, 335, 375, 454, 463
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 5 cut(s) 65, 250, 435, 564, 570
BstSLI GKGCMC 2 cut(s) 407, 657
BstUI CGCG 3 cut(s) 98, 280, 519
BstV1I GCAGC 3 cut(s) 313, 453, 573
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 488, 590
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 606
BtrI CACGTC 1 cut(s) 462
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 320, 359
Cac8I GCNNGC 5 cut(s) 446, 471, 519, 588, 627
CfoI GCGC 6 cut(s) 15, 100, 346, 519, 521, 536
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 487, 568
Cfr42I CCGCGG 1 cut(s) 281
CseI GACGC 3 cut(s) 104, 185, 618
Csp6I GTAC 1 cut(s) 529
CviAII CATG 2 cut(s) 451, 580
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 134, 223
DinI GGCGCC 1 cut(s) 345
DpnI GATC 3 cut(s) 152, 199, 214
DpnII GATC 3 cut(s) 150, 197, 212
DriI GACNNNNNGTC 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 318
Eam1105I GACNNNNNGTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 52, 496
Eco47I GGWCC 1 cut(s) 568
Eco47III AGCGCT 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 2 cut(s) 171, 558
EcoNI CCTNNNNNAGG 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 570
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
Esp3I CGTCTC 2 cut(s) 252, 508
FaeI CATG 2 cut(s) 454, 583
FaiI YATR 4 cut(s) 182, 452, 524, 581
FaqI GGGAC 3 cut(s) 385, 410, 452
FatI CATG 2 cut(s) 450, 579
FauI CCCGC 2 cut(s) 362, 549
Fnu4HI GCNGC 8 cut(s) 236, 278, 306, 327, 467, 545, 562, 584
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 8 cut(s) 236, 278, 306, 327, 467, 545, 562, 584
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 6 cut(s) 14, 99, 345, 518, 520, 535
GluI GCNGC 8 cut(s) 236, 278, 306, 327, 467, 545, 562, 584
GsuI CTGGAG 2 cut(s) 104, 334
HaeII RGCGCY 2 cut(s) 347, 537
HaeIII GGCC 2 cut(s) 488, 590
HapII CCGG 9 cut(s) 66, 89, 148, 232, 251, 436, 566, 626, 647
HgaI GACGC 3 cut(s) 104, 185, 618
HhaI GCGC 6 cut(s) 15, 100, 346, 519, 521, 536
Hin1I GRCGYC 3 cut(s) 177, 344, 629
Hin1II CATG 2 cut(s) 454, 583
Hin6I GCGC 6 cut(s) 13, 98, 344, 517, 519, 534
HinP1I GCGC 6 cut(s) 13, 98, 344, 517, 519, 534
HinfI GANTC 2 cut(s) 288, 596
HpaII CCGG 9 cut(s) 66, 89, 148, 232, 251, 436, 566, 626, 647
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 112, 405
Hpy188I TCNGA 2 cut(s) 81, 498
Hpy188III TCNNGA 6 cut(s) 35, 121, 148, 285, 292, 351
Hpy8I GTNNAC 2 cut(s) 112, 405
Hpy99I CGWCG 2 cut(s) 98, 634
HpyAV CCTTC 4 cut(s) 69, 86, 348, 358
HpyCH4III ACNGT 2 cut(s) 502, 667
HpyCH4IV ACGT 4 cut(s) 170, 245, 461, 557
HpyCH4V TGCA 4 cut(s) 329, 405, 561, 604
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 224, 335, 375, 454, 463
HpyF3I CTNAG 2 cut(s) 134, 223
HpySE526I ACGT 4 cut(s) 170, 245, 461, 557
Hsp92I GRCGYC 3 cut(s) 177, 344, 629
Hsp92II CATG 2 cut(s) 454, 583
HspAI GCGC 6 cut(s) 13, 98, 344, 517, 519, 534
KasI GGCGCC 1 cut(s) 343
Kpn2I TCCGGA 1 cut(s) 147
KroI GCCGGC 1 cut(s) 625
KroNI GCCGGC 1 cut(s) 627
KspI CCGCGG 1 cut(s) 281
Kzo9I GATC 3 cut(s) 150, 197, 212
LmnI GCTCC 5 cut(s) 55, 61, 135, 209, 223
Lsp1109I GCAGC 3 cut(s) 313, 453, 573
LweI GCATC 1 cut(s) 75
MaeII ACGT 4 cut(s) 170, 245, 461, 557
MaeIII GTNAC 2 cut(s) 173, 357
MalI GATC 3 cut(s) 152, 199, 214
MbiI CCGCTC 1 cut(s) 50
MboI GATC 3 cut(s) 150, 197, 212
MboII GAAGA 1 cut(s) 305
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 407, 657
Mly113I GGCGCC 1 cut(s) 344
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 9 cut(s) 18, 55, 136, 143, 232, 349, 358, 387, 408
MreI CGCCGGCG 1 cut(s) 625
MroI TCCGGA 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 625
MspA1I CMGCKG 3 cut(s) 227, 280, 586
MspI CCGG 9 cut(s) 66, 89, 148, 232, 251, 436, 566, 626, 647
MspR9I CCNGG 5 cut(s) 67, 252, 437, 566, 572
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 3 cut(s) 98, 280, 519
MwoI GCNNNNNNNGC 6 cut(s) 62, 224, 335, 375, 454, 463
NaeI GCCGGC 1 cut(s) 627
NarI GGCGCC 1 cut(s) 344
NciI CCSGG 4 cut(s) 67, 252, 437, 566
NdeII GATC 3 cut(s) 150, 197, 212
NgoMIV GCCGGC 1 cut(s) 625
NlaIII CATG 2 cut(s) 454, 583
NlaIV GGNNCC 4 cut(s) 152, 205, 256, 345
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 173, 357
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 1 cut(s) 583
PauI GCGCGC 1 cut(s) 517
PdiI GCCGGC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 288, 596
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 8 cut(s) 237, 279, 307, 328, 468, 546, 563, 585
PluTI GGCGCC 1 cut(s) 347
PmaCI CACGTG 2 cut(s) 171, 558
PmlI CACGTG 2 cut(s) 171, 558
Ppu21I YACGTR 2 cut(s) 171, 558
Psp6I CCWGG 1 cut(s) 570
PspCI CACGTG 2 cut(s) 171, 558
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 4 cut(s) 152, 205, 256, 345
PspPI GGNCC 2 cut(s) 487, 568
PsuI RGATCY 1 cut(s) 150
PteI GCGCGC 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SacII CCGCGG 1 cut(s) 281
SatI GCNGC 8 cut(s) 236, 278, 306, 327, 467, 545, 562, 584
Sau3AI GATC 3 cut(s) 150, 197, 212
Sau96I GGNCC 2 cut(s) 487, 568
ScrFI CCNGG 5 cut(s) 67, 252, 437, 566, 572
SduI GDGCHC 2 cut(s) 407, 657
SfaNI GCATC 1 cut(s) 75
SfoI GGCGCC 1 cut(s) 345
Sfr303I CCGCGG 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 625
SgrBI CCGCGG 1 cut(s) 281
SinI GGWCC 1 cut(s) 568
SspDI GGCGCC 1 cut(s) 343
StyD4I CCNGG 5 cut(s) 65, 250, 435, 564, 570
TaaI ACNGT 2 cut(s) 502, 667
TaiI ACGT 4 cut(s) 173, 248, 464, 560
TaqI TCGA 2 cut(s) 293, 432
TatI WGTACW 1 cut(s) 528
TauI GCSGC 5 cut(s) 238, 280, 308, 547, 586
TfiI GAWTC 2 cut(s) 288, 596
TscAI CASTG 2 cut(s) 327, 366
TseFI GTSAC 2 cut(s) 173, 357
TseI GCWGC 3 cut(s) 326, 466, 561
Tsp45I GTSAC 2 cut(s) 173, 357
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 2 cut(s) 327, 366
Van91I CCANNNNNTGG 1 cut(s) 451
VneI GTGCAC 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 568
XagI CCTNNNNNAGG 1 cut(s) 352
XceI RCATGY 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.