Rorug02G0488500

GPI-anchored protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
61821346 .. 61824398
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0488500.1

Sequence Viewer

Length: 1455 bp
ATGAAGAGAGCAGGGCTTGTGTTCGTCCCCACACCAGCTGTAGGTCATCTAGTATCCACAATCGAGTTCTCGAAACGTATGTTGAATCTAAGCGATCGATTCTCAGTAATAATTCTTGTAATGAAATCGCCATTTGGAGTCGCTGCGAATCAGTCAAACACTAGTCAGCCGGTTCCTGCAGCCTCCCACACCCACATAAAACTCATCCATCTTCCCACTGTAGATCCCCCAACTGAGTTTGAGTCTGTAGAGAAGTTCCTCGGTGATTACATAGACAAATACAAGAACCATGTCAAGGACACCATTATCAACCAGGTATTACCTAACACGTCTCAAATTGTTGGAGTGATTGTTGACATGTTCTGCACTACCATGATTGACGTAGCCCATGAACTCAAGGTTCCATCATTTGTGTTCTTCACTTCTGGAGCAGCTTTTCTTGGTTTGTTGCTCTACCTTCAAAAACGGTACGACCAAGTTGGCAAAGTGTTTGATGAATCGGATCCTGACTCGATTGTACCGAGTTATGTCAACCCAGTGCCCACAAATGTAATGCCTGGATTTGCCTTCAACAATGGTGGATACATTTCATTTGCAAACCATGCTAGAAGGTTCAAGGAAACCAAGGGCATAATCATCAACACGTTGGTTGAGCTCGAATCCCATGCGGTTCACTCACTTTTTGATGGTAATGAAAATGAGCAAAGTCAAGCGCAGCCGCATGTTTACGCAGTTGGTCCCTTGGTTGACATCAAAGGTAAGTATGAAGTTCAGTCTAACCTTACCAAAGTTGACAAGATCATGAAATGGCTTGATGAGCAGTCTCCAAAATCAGTGGTGTTCCTCTGCTTTGGGAGCTCTGGGAGCTTTGATGAAACCCAATTGAAAGAGATGGCAATCGGGCTCGAGCGAAGTGGCCAGAGATTCTTGTGGTCTGTACGCCAAAACCCACCAAAAGGAACCATGGCAACGCCAGGTGAGTACACAAATTATGATGATTTTTTACCTCATGGATTTTCGGAGAGGACTAAAGGGATGGGAATGTTGTGTGGGTGGGCCCCACAAGTGGAGGTTTTAAGTCACAGAGCAATTGGGGGATTTGTATCACATTGTGGGTGGAACTCTATATTGGAAAGCTTGTGGTTTGGTGTGCCTATTGCTACTTGGCCATTGTATGCTGAGCAACAGCTCAATGCATTTCAGATGACGAGGGACTTGAGATTGGGGGTGGAGTTGAGTGTTATTTACAGAAAGGATGGTGGTTATTTTGTAATGGCGGATGAGATTGAGAGAGCTCTGAGACGTTTGATGGAGGGTGATGGTGAGATTAGGAAGAGGGTTCAAGAAATGAGTGGAATATGTAGGAAGGCTGTTGATGATGGTGGGTCTTCTTCTGCTGCTTTTGGAAGCTTAATTGAGGTCATGTTAGCAAGCCTTAAAACTAAAAGCAGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

484

Amino Acids

53.76

Weight (kDa)

6.25

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 275 - 404 2.5e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011246)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 668, 719, 1277
AclWI GGATC 3 cut(s) 218, 497, 510
AcoI YGGCCR 2 cut(s) 916, 1166
AdeI CACNNNGTG 1 cut(s) 1112
AfaI GTAC 4 cut(s) 470, 519, 939, 983
AfiI CCNNNNNNNGG 4 cut(s) 41, 295, 956, 1066
AflIII ACRYGT 3 cut(s) 327, 357, 642
AgsI TTSAA 6 cut(s) 85, 461, 571, 616, 886, 1343
AhlI ACTAGT 1 cut(s) 161
AjiI CACGTC 1 cut(s) 330
AjnI CCWGG 3 cut(s) 312, 556, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 1112, 1144
AluBI AGCT 9 cut(s) 38, 434, 655, 858, 867, 1137, 1189, 1295, 1410
AluI AGCT 9 cut(s) 38, 434, 655, 858, 867, 1137, 1189, 1295, 1410
Alw21I GWGCWC 3 cut(s) 657, 860, 1297
Alw26I GTCTC 3 cut(s) 336, 828, 1294
AlwI GGATC 3 cut(s) 218, 497, 510
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 3 cut(s) 916, 1056, 1166
ApaI GGGCCC 1 cut(s) 1060
ApeKI GCWGC 5 cut(s) 143, 179, 431, 715, 1397
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 737, 1056, 1057
AsuHPI GGTGA 4 cut(s) 275, 989, 1328, 1334
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 1 cut(s) 737
BaeGI GKGCMC 2 cut(s) 543, 1060
BalI TGGCCA 2 cut(s) 918, 1168
BamHI GGATCC 1 cut(s) 502
BanII GRGCYC 5 cut(s) 657, 860, 906, 1060, 1297
BbsI GAAGAC 1 cut(s) 1380
Bbv12I GWGCWC 3 cut(s) 657, 860, 1297
BbvI GCAGC 5 cut(s) 130, 191, 443, 727, 1384
BccI CCATC 9 cut(s) 216, 412, 680, 886, 1030, 1250, 1303, 1313, 1373
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 3 cut(s) 314, 558, 975
BciVI GTATCC 2 cut(s) 64, 575
BcoDI GTCTC 3 cut(s) 336, 828, 1294
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 3 cut(s) 50, 162, 606
BfmI CTRYAG 4 cut(s) 39, 177, 219, 246
BfuI GTATCC 2 cut(s) 64, 575
BisI GCNGC 6 cut(s) 144, 180, 432, 716, 719, 1398
BlpI GCTNAGC 1 cut(s) 1179
BlsI GCNGC 6 cut(s) 145, 181, 433, 717, 720, 1399
Bme1390I CCNGG 3 cut(s) 314, 558, 975
Bme18I GGWCC 1 cut(s) 737
BmeT110I CYCGRG 1 cut(s) 905
BmgBI CACGTC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 737, 1056, 1057
BmiI GGNNCC 7 cut(s) 174, 402, 504, 739, 961, 1058, 1059
BmrFI CCNGG 3 cut(s) 314, 558, 975
BmrI ACTGGG 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 1380
BpmI CTGGAG 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 1179
BpuEI CTTGAG 2 cut(s) 380, 1237
Bsa29I ATCGAT 1 cut(s) 97
BsaBI GATNNNNATC 2 cut(s) 896, 1102
BsaJI CCNNGG 4 cut(s) 259, 624, 741, 963
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 295, 956, 1066
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 536
Bse8I GATNNNNATC 2 cut(s) 896, 1102
BseBI CCWGG 3 cut(s) 314, 558, 975
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 4 cut(s) 259, 624, 741, 963
BseGI GGATG 4 cut(s) 204, 1041, 1261, 1285
BseJI GATNNNNATC 2 cut(s) 896, 1102
BseLI CCNNNNNNNGG 4 cut(s) 41, 295, 956, 1066
BseMII CTCAG 4 cut(s) 117, 225, 1170, 1289
BseNI ACTGG 1 cut(s) 536
BseSI GKGCMC 2 cut(s) 543, 1060
BseXI GCAGC 5 cut(s) 130, 191, 443, 727, 1384
BsgI GTGCAG 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 3 cut(s) 918, 1058, 1168
BshVI ATCGAT 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 3 cut(s) 657, 860, 1297
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 3 cut(s) 11, 723, 1226
BslI CCNNNNNNNGG 4 cut(s) 41, 295, 956, 1066
BsmAI GTCTC 3 cut(s) 336, 828, 1294
BsmBI CGTCTC 2 cut(s) 336, 1294
BsmFI GGGAC 3 cut(s) 11, 723, 1226
BsnI GGCC 3 cut(s) 918, 1058, 1168
BsoBI CYCGRG 1 cut(s) 905
Bsp120I GGGCCC 1 cut(s) 1056
Bsp1286I GDGCHC 6 cut(s) 543, 657, 860, 906, 1060, 1297
Bsp143I GATC 4 cut(s) 94, 223, 502, 798
Bsp1720I GCTNAGC 1 cut(s) 1179
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 3 cut(s) 668, 719, 1277
BspANI GGCC 3 cut(s) 918, 1058, 1168
BspCNI CTCAG 4 cut(s) 116, 226, 1171, 1290
BspDI ATCGAT 1 cut(s) 97
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 7 cut(s) 174, 402, 504, 739, 961, 1058, 1059
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 3 cut(s) 218, 497, 510
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 4 cut(s) 259, 624, 741, 963
BssMI GATC 4 cut(s) 94, 223, 502, 798
BssT1I CCWWGG 3 cut(s) 624, 741, 963
Bst2UI CCWGG 3 cut(s) 314, 558, 975
Bst4CI ACNGT 2 cut(s) 220, 468
Bst6I CTCTTC 1 cut(s) 1328
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 1432
BstDEI CTNAG 5 cut(s) 89, 103, 234, 1179, 1298
BstDSI CCRYGG 1 cut(s) 963
BstF5I GGATG 4 cut(s) 204, 1041, 1261, 1285
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 4 cut(s) 97, 226, 505, 801
BstMAI GTCTC 3 cut(s) 336, 828, 1294
BstMBI GATC 4 cut(s) 94, 223, 502, 798
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 4 cut(s) 602, 817, 855, 864
BstNI CCWGG 3 cut(s) 314, 558, 975
BstNSI RCATGY 2 cut(s) 361, 725
BstSCI CCNGG 3 cut(s) 312, 556, 973
BstSFI CTRYAG 4 cut(s) 39, 177, 219, 246
BstSLI GKGCMC 2 cut(s) 543, 1060
BstV1I GCAGC 5 cut(s) 130, 191, 443, 727, 1384
BstV2I GAAGAC 1 cut(s) 1380
BstX2I RGATCY 2 cut(s) 223, 502
BstYI RGATCY 2 cut(s) 223, 502
Bsu15I ATCGAT 1 cut(s) 97
BsuI GTATCC 2 cut(s) 64, 575
BsuRI GGCC 3 cut(s) 918, 1058, 1168
BsuTUI ATCGAT 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 963
BtrI CACGTC 1 cut(s) 330
BtsCI GGATG 4 cut(s) 204, 1041, 1261, 1285
BtsIMutI CAGTG 3 cut(s) 216, 543, 840
Cac8I GCNNGC 1 cut(s) 1432
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 737, 1056, 1057
ClaI ATCGAT 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 312
Csp6I GTAC 4 cut(s) 469, 518, 938, 982
CspCI CAANNNNNGTGG 4 cut(s) 559, 594, 816, 851
CviQI GTAC 4 cut(s) 469, 518, 938, 982
DdeI CTNAG 5 cut(s) 89, 103, 234, 1179, 1298
DpnI GATC 4 cut(s) 96, 225, 504, 800
DpnII GATC 4 cut(s) 94, 223, 502, 798
DraIII CACNNNGTG 1 cut(s) 1112
EaeI YGGCCR 2 cut(s) 916, 1166
Eam1104I CTCTTC 1 cut(s) 1328
EarI CTCTTC 1 cut(s) 1328
EciI GGCGGA 1 cut(s) 1292
Ecl136II GAGCTC 3 cut(s) 655, 858, 1295
Eco130I CCWWGG 3 cut(s) 624, 741, 963
Eco24I GRGCYC 5 cut(s) 657, 860, 906, 1060, 1297
Eco47I GGWCC 1 cut(s) 737
Eco53kI GAGCTC 3 cut(s) 655, 858, 1295
Eco88I CYCGRG 1 cut(s) 905
EcoICRI GAGCTC 3 cut(s) 655, 858, 1295
EcoO109I RGGNCCY 1 cut(s) 1057
EcoRII CCWGG 3 cut(s) 312, 556, 973
EcoT14I CCWWGG 3 cut(s) 624, 741, 963
EcoT22I ATGCAT 1 cut(s) 1198
EcoT38I GRGCYC 5 cut(s) 657, 860, 906, 1060, 1297
ErhI CCWWGG 3 cut(s) 624, 741, 963
Esp3I CGTCTC 2 cut(s) 336, 1294
FaqI GGGAC 3 cut(s) 11, 723, 1226
Fnu4HI GCNGC 6 cut(s) 144, 180, 432, 716, 719, 1398
FokI GGATG 4 cut(s) 191, 1048, 1268, 1292
FriOI GRGCYC 5 cut(s) 657, 860, 906, 1060, 1297
Fsp4HI GCNGC 6 cut(s) 144, 180, 432, 716, 719, 1398
FspBI CTAG 3 cut(s) 50, 162, 606
GlaI GCGC 1 cut(s) 714
GluI GCNGC 6 cut(s) 144, 180, 432, 716, 719, 1398
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 3 cut(s) 918, 1058, 1168
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 715
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HincII GTYRAC 4 cut(s) 355, 532, 748, 793
HindII GTYRAC 4 cut(s) 355, 532, 748, 793
HindIII AAGCTT 2 cut(s) 1135, 1408
HinfI GANTC 9 cut(s) 85, 99, 138, 148, 242, 497, 509, 659, 924
HpaII CCGG 1 cut(s) 170
HphI GGTGA 4 cut(s) 275, 989, 1328, 1334
Hpy166II GTNNAC 7 cut(s) 355, 532, 673, 727, 748, 793, 984
Hpy188I TCNGA 4 cut(s) 502, 1021, 1203, 1299
Hpy188III TCNNGA 5 cut(s) 70, 426, 506, 802, 1343
Hpy8I GTNNAC 7 cut(s) 355, 532, 673, 727, 748, 793, 984
HpyAV CCTTC 4 cut(s) 467, 577, 603, 1360
HpyCH4III ACNGT 2 cut(s) 220, 468
HpyCH4IV ACGT 5 cut(s) 76, 329, 381, 644, 1303
HpyCH4V TGCA 4 cut(s) 179, 366, 596, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 602, 817, 855, 864
HpyF3I CTNAG 5 cut(s) 89, 103, 234, 1179, 1298
HpySE526I ACGT 5 cut(s) 76, 329, 381, 644, 1303
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 4 cut(s) 94, 223, 502, 798
LmnI GCTCC 3 cut(s) 428, 855, 864
Lsp1109I GCAGC 5 cut(s) 130, 191, 443, 727, 1384
MabI ACCWGGT 1 cut(s) 312
MaeI CTAG 3 cut(s) 50, 162, 606
MaeII ACGT 5 cut(s) 76, 329, 381, 644, 1303
MaeIII GTNAC 1 cut(s) 1079
MalI GATC 4 cut(s) 96, 225, 504, 800
MboI GATC 4 cut(s) 94, 223, 502, 798
MboII GAAGA 6 cut(s) 16, 203, 409, 1345, 1380, 1383
MfeI CAATTG 2 cut(s) 881, 1089
MflI RGATCY 2 cut(s) 223, 502
MhlI GDGCHC 6 cut(s) 543, 657, 860, 906, 1060, 1297
MlsI TGGCCA 2 cut(s) 918, 1168
MluCI AATT 6 cut(s) 111, 336, 881, 988, 1089, 1413
MluNI TGGCCA 2 cut(s) 918, 1168
MlyI GAGTC 3 cut(s) 147, 251, 503
MmeI TCCRAC 1 cut(s) 322
Mox20I TGGCCA 2 cut(s) 918, 1168
Mph1103I ATGCAT 1 cut(s) 1198
MscI TGGCCA 2 cut(s) 918, 1168
MseI TTAA 3 cut(s) 1076, 1412, 1437
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 2 cut(s) 918, 1168
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 3 cut(s) 314, 558, 975
MunI CAATTG 2 cut(s) 881, 1089
MvaI CCWGG 3 cut(s) 314, 558, 975
MwoI GCNNNNNNNGC 4 cut(s) 602, 817, 855, 864
NcoI CCATGG 1 cut(s) 963
NdeII GATC 4 cut(s) 94, 223, 502, 798
NlaIV GGNNCC 7 cut(s) 174, 402, 504, 739, 961, 1058, 1059
NmuCI GTSAC 1 cut(s) 1079
NsiI ATGCAT 1 cut(s) 1198
NspI RCATGY 2 cut(s) 361, 725
PaeR7I CTCGAG 1 cut(s) 905
PagI TCATGA 1 cut(s) 801
PciI ACATGT 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 518
PfeI GAWTC 6 cut(s) 85, 99, 148, 497, 659, 924
PkrI GCNGC 6 cut(s) 145, 181, 433, 717, 720, 1399
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 3 cut(s) 146, 250, 503
PpsI GAGTC 3 cut(s) 146, 250, 503
PscI ACATGT 1 cut(s) 357
Psp124BI GAGCTC 3 cut(s) 657, 860, 1297
Psp6I CCWGG 3 cut(s) 312, 556, 973
PspGI CCWGG 3 cut(s) 312, 556, 973
PspN4I GGNNCC 7 cut(s) 174, 402, 504, 739, 961, 1058, 1059
PspOMI GGGCCC 1 cut(s) 1056
PspPI GGNCC 3 cut(s) 737, 1056, 1057
PspXI VCTCGAGB 1 cut(s) 905
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 223, 502
PvuI CGATCG 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 4 cut(s) 470, 519, 939, 983
RsaNI GTAC 4 cut(s) 469, 518, 938, 982
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 3 cut(s) 657, 860, 1297
SaqAI TTAA 3 cut(s) 1076, 1412, 1437
SatI GCNGC 6 cut(s) 144, 180, 432, 716, 719, 1398
Sau3AI GATC 4 cut(s) 94, 223, 502, 798
Sau96I GGNCC 3 cut(s) 737, 1056, 1057
SchI GAGTC 3 cut(s) 147, 251, 503
ScrFI CCNGG 3 cut(s) 314, 558, 975
SduI GDGCHC 6 cut(s) 543, 657, 860, 906, 1060, 1297
SexAI ACCWGGT 1 cut(s) 312
SfcI CTRYAG 4 cut(s) 39, 177, 219, 246
Sfr274I CTCGAG 1 cut(s) 905
SinI GGWCC 1 cut(s) 737
SlaI CTCGAG 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 3 cut(s) 395, 905, 1216
SmoI CTYRAG 3 cut(s) 395, 905, 1216
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 6 cut(s) 111, 336, 881, 988, 1089, 1413
SsiI CCGC 3 cut(s) 668, 719, 1277
SspMI CTAG 3 cut(s) 50, 162, 606
SstI GAGCTC 3 cut(s) 657, 860, 1297
StyD4I CCNGG 3 cut(s) 312, 556, 973
StyI CCWWGG 3 cut(s) 624, 741, 963
TaaI ACNGT 2 cut(s) 220, 468
TaiI ACGT 5 cut(s) 79, 332, 384, 647, 1306
TaqI TCGA 6 cut(s) 63, 71, 97, 512, 657, 906
TasI AATT 6 cut(s) 111, 336, 881, 988, 1089, 1413
TatI WGTACW 1 cut(s) 981
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 6 cut(s) 85, 99, 148, 497, 659, 924
Tru1I TTAA 3 cut(s) 1076, 1412, 1437
Tru9I TTAA 3 cut(s) 1076, 1412, 1437
TscAI CASTG 3 cut(s) 223, 543, 840
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 5 cut(s) 143, 179, 431, 715, 1397
Tsp45I GTSAC 1 cut(s) 1079
TspDTI ATGAA 9 cut(s) 17, 137, 405, 510, 579, 708, 780, 818, 888
TspRI CASTG 3 cut(s) 223, 543, 840
VpaK11BI GGWCC 1 cut(s) 737
XceI RCATGY 2 cut(s) 361, 725
XhoI CTCGAG 1 cut(s) 905
XspI CTAG 3 cut(s) 50, 162, 606
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.