Prupe.3G228400_v2.0.a1

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011246
Physical Location & Seq
Reverse (-)
22730043 .. 22731887
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G228400.1

Sequence Viewer

Length: 975 bp
ATGCCATCATTTCCAACCTCCACCATTTTCACCTTCTTCCTTCTCTTGTTAATATCCAGCTTTAACATTACCCTCGCCGGTTTACTTGCTCAACCGATAACCGGTCACCCCCAGCCACTCAAACCGGGTGAGTACTCCAGCCCCAACACTGTCCCGGCCCTCCCGTCCCAAACCCCAACCCAAACCTGCCACCTCGACCTCTCCGATGAGCTCTTCGGCGGCGTCAGCCAAGCATGCGGCCGAGACCTCGACCGCAGCCGATGCTGCCCTGTCCTAGCCGCCTGGCTGTTCGCTGCCCATGCCAGGTCAGCTCTCGAGCTCCCCTCATCGGCTCCGGCTCCTTCCGCCGGCCTCGACCAGCCGATGATGCCGGACGACTCGCAGAAGTGCGTCAACTCCTTGCAGTCCTCGCTTGTGGGCCGAAACATCCGGATTCCTCAGCCGAACGCCAGCTGCGACGCCGTTTTGTGCTTCTGCGGCATCCGGCTCCACCAGATCGGCTCTCTCAGCTGCCCCGCCGCTTTTAACCTGTCGCTAGGGTTTCACAACGCCACGCCCACCGCCGCCGTCAAGAACTTGGAGAAGAACTGCCGCAACTCTTCGTATTCTGGCTGCACCAAGTGCCTCGGCGCTCTCCAGAAGCTCAAGGGTGGGAGCAAGAACGGAACGGCGGGGGACAAGTCCACGAGCGACAGAGCGAGCAAGATGTTCAACAGGGACTGCCAGCTCATGGGGCTGACGTGGCTGCTGGCCCGGAACAAAACGGCGTACATACCCACTGTTTCGGCGGTGCTGCGGGCCATAATGTACAGTGCGCACCCACCGCACGAGTCCACGTGTAGCCCGGACCAGGAGAACATGCCGCTGGCCGTAGATTCACTGCAGTTCGATAAGGGGCAAGCGCCCGCATCGTCACCGTCTATTTTATTGTTTCCGATTCTGCCCCTGATCATTTTGGTGTCTCTGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

34.5

Weight (kDa)

8.38

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28100
fragaria_vesca FvH4_6g44390
malus_domestica MD09G1097800.v1.1 MD17G1086100.v1.1
prunus_persica Prupe.3G228400_v2.0.a1
pyrus_communis pycom09g02190 pycom17g08360
rosa_chinensis RchiOBHm_Chr2g0161331 RchiOBHm_Chr2g0161381
rosa_laevigata RLG00000021280
rosa_multiflora Rmu_co8294437.1_g000001 Rmu_ssc0000196.1_g000002
rosa_roxburghii Rroxscaffold_2G00088890
rosa_rugosa Rorug02G0488500
rosa_samantha Rh2AG555000 Rh2BG568200 Rh2CG538700 Rh2CG538800 Rh2DG577900
rosa_wichuraiana Rw2G045920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 816
Acc36I ACCTGC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 730
AccIII TCCGGA 1 cut(s) 429
AcoI YGGCCR 2 cut(s) 238, 867
AcvI CACGTG 1 cut(s) 837
AcyI GRCGYC 2 cut(s) 222, 459
AdeI CACNNNGTG 1 cut(s) 621
AfaI GTAC 3 cut(s) 134, 770, 809
AfiI CCNNNNNNNGG 6 cut(s) 101, 303, 328, 347, 730, 850
AflIII ACRYGT 1 cut(s) 836
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 1 cut(s) 712
AjiI CACGTC 1 cut(s) 741
AjnI CCWGG 3 cut(s) 281, 302, 849
AluBI AGCT 8 cut(s) 60, 211, 311, 319, 453, 510, 643, 727
AluI AGCT 8 cut(s) 60, 211, 311, 319, 453, 510, 643, 727
Alw21I GWGCWC 2 cut(s) 213, 321
Alw26I GTCTC 2 cut(s) 237, 966
AlwNI CAGNNNCTG 1 cut(s) 720
Ama87I CYCGRG 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 429
AoxI GGCC 7 cut(s) 156, 238, 349, 418, 750, 798, 867
ApeKI GCWGC 8 cut(s) 255, 264, 293, 453, 510, 612, 745, 793
AsiGI ACCGGT 1 cut(s) 101
AspLEI GCGC 3 cut(s) 632, 817, 904
AspS9I GGNCC 5 cut(s) 157, 418, 751, 798, 847
AsuC2I CCSGG 4 cut(s) 126, 155, 754, 845
AsuHPI GGTGA 4 cut(s) 22, 98, 140, 906
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 213, 321
BauI CACGAG 2 cut(s) 685, 827
BbrPI CACGTG 1 cut(s) 837
Bbv12I GWGCWC 2 cut(s) 213, 321
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 8 cut(s) 251, 267, 280, 440, 497, 599, 732, 780
BccI CCATC 1 cut(s) 13
BceAI ACGGC 5 cut(s) 446, 551, 684, 780, 854
BciT130I CCWGG 3 cut(s) 283, 304, 851
BclI TGATCA 1 cut(s) 948
BcnI CCSGG 4 cut(s) 126, 155, 754, 845
BcoDI GTCTC 2 cut(s) 237, 966
BfaI CTAG 2 cut(s) 275, 536
BfmI CTRYAG 1 cut(s) 881
BfoI RGCGCY 2 cut(s) 633, 905
BfuAI ACCTGC 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 7 cut(s) 126, 155, 283, 304, 754, 845, 851
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 741
BmgT120I GGNCC 5 cut(s) 157, 418, 751, 798, 847
BmiI GGNNCC 3 cut(s) 333, 339, 488
BmrFI CCNGG 7 cut(s) 126, 155, 283, 304, 754, 845, 851
BmsI GCATC 4 cut(s) 251, 357, 489, 917
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 2 cut(s) 121, 620
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 4 cut(s) 126, 155, 754, 845
BsaAI YACGTR 1 cut(s) 837
BsaHI GRCGYC 2 cut(s) 222, 459
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 625
BsaWI WCCGGW 2 cut(s) 101, 429
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 303, 328, 347, 730, 850
Bse118I RCCGGY 3 cut(s) 77, 101, 347
BseAI TCCGGA 1 cut(s) 429
BseBI CCWGG 3 cut(s) 283, 304, 851
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 2 cut(s) 426, 480
BseLI CCNNNNNNNGG 6 cut(s) 101, 303, 328, 347, 730, 850
BseMII CTCAG 2 cut(s) 452, 520
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 8 cut(s) 251, 267, 280, 440, 497, 599, 732, 780
BseYI CCCAGC 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 598
Bsh1285I CGRYCG 2 cut(s) 241, 253
BshFI GGCC 7 cut(s) 158, 240, 351, 420, 752, 800, 869
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 2 cut(s) 241, 253
BsiHKAI GWGCWC 2 cut(s) 213, 321
BsiHKCI CYCGRG 1 cut(s) 314
BslFI GGGAC 4 cut(s) 137, 151, 689, 731
BslI CCNNNNNNNGG 6 cut(s) 101, 303, 328, 347, 730, 850
BsmAI GTCTC 2 cut(s) 237, 966
BsmFI GGGAC 4 cut(s) 137, 151, 689, 731
BsnI GGCC 7 cut(s) 158, 240, 351, 420, 752, 800, 869
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 213, 321
Bsp13I TCCGGA 1 cut(s) 429
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 2 cut(s) 495, 948
BspANI GGCC 7 cut(s) 158, 240, 351, 420, 752, 800, 869
BspCNI CTCAG 2 cut(s) 451, 519
BspEI TCCGGA 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 333, 339, 488
BspMAI CTGCAG 1 cut(s) 885
BspMI ACCTGC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 3 cut(s) 77, 101, 347
BsrGI TGTACA 1 cut(s) 807
BssAI RCCGGY 3 cut(s) 77, 101, 347
BssECI CCNNGG 1 cut(s) 625
BssMI GATC 2 cut(s) 495, 948
BssNI GRCGYC 2 cut(s) 222, 459
BssSI CACGAG 2 cut(s) 685, 827
Bst2BI CACGAG 2 cut(s) 685, 827
Bst2UI CCWGG 3 cut(s) 283, 304, 851
Bst4CI ACNGT 4 cut(s) 151, 781, 812, 918
Bst6I CTCTTC 2 cut(s) 218, 604
BstACI GRCGYC 2 cut(s) 222, 459
BstAPI GCANNNNNTGC 2 cut(s) 261, 621
BstAUI TGTACA 1 cut(s) 807
BstBAI YACGTR 1 cut(s) 837
BstDEI CTNAG 2 cut(s) 438, 506
BstEII GGTNACC 1 cut(s) 104
BstF5I GGATG 2 cut(s) 426, 480
BstH2I RGCGCY 2 cut(s) 633, 905
BstHHI GCGC 3 cut(s) 632, 817, 904
BstKTI GATC 2 cut(s) 498, 951
BstMAI GTCTC 2 cut(s) 237, 966
BstMBI GATC 2 cut(s) 495, 948
BstMCI CGRYCG 2 cut(s) 241, 253
BstNI CCWGG 3 cut(s) 283, 304, 851
BstNSI RCATGY 2 cut(s) 237, 862
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 7 cut(s) 124, 153, 281, 302, 752, 843, 849
BstSFI CTRYAG 1 cut(s) 881
BstV1I GCAGC 8 cut(s) 251, 267, 280, 440, 497, 599, 732, 780
BstZI CGGCCG 1 cut(s) 238
BsuRI GGCC 7 cut(s) 158, 240, 351, 420, 752, 800, 869
BtrI CACGTC 1 cut(s) 741
BtsCI GGATG 2 cut(s) 426, 480
BtsI GCAGTG 1 cut(s) 878
BtsIMutI CAGTG 4 cut(s) 147, 777, 817, 878
BveI ACCTGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 720
CfoI GCGC 3 cut(s) 632, 817, 904
Cfr10I RCCGGY 3 cut(s) 77, 101, 347
Cfr13I GGNCC 5 cut(s) 157, 418, 751, 798, 847
CseI GACGC 3 cut(s) 211, 379, 467
Csp6I GTAC 3 cut(s) 133, 769, 808
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 4 cut(s) 234, 299, 730, 859
CviQI GTAC 3 cut(s) 133, 769, 808
DdeI CTNAG 2 cut(s) 438, 506
DpnI GATC 2 cut(s) 497, 950
DpnII GATC 2 cut(s) 495, 948
DraIII CACNNNGTG 1 cut(s) 621
EaeI YGGCCR 2 cut(s) 238, 867
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 218, 604
EarI CTCTTC 2 cut(s) 218, 604
EciI GGCGGA 1 cut(s) 334
Ecl136II GAGCTC 2 cut(s) 211, 319
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 213, 321
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 847
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 2 cut(s) 211, 319
Eco72I CACGTG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 314
Eco91I GGTNACC 1 cut(s) 104
EcoICRI GAGCTC 2 cut(s) 211, 319
EcoO65I GGTNACC 1 cut(s) 104
EcoRII CCWGG 3 cut(s) 281, 302, 849
EcoT38I GRGCYC 2 cut(s) 213, 321
FaeI CATG 4 cut(s) 237, 302, 733, 862
FaiI YATR 6 cut(s) 235, 300, 731, 773, 803, 860
FaqI GGGAC 4 cut(s) 137, 151, 689, 731
FatI CATG 4 cut(s) 233, 298, 729, 858
FauI CCCGC 4 cut(s) 523, 664, 789, 913
FbaI TGATCA 1 cut(s) 948
FokI GGATG 2 cut(s) 413, 467
FriOI GRGCYC 2 cut(s) 213, 321
FspAI RTGCGCAY 1 cut(s) 816
FspBI CTAG 2 cut(s) 275, 536
FspI TGCGCA 1 cut(s) 816
GlaI GCGC 3 cut(s) 631, 816, 903
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 2 cut(s) 121, 620
HaeII RGCGCY 2 cut(s) 633, 905
HaeIII GGCC 7 cut(s) 158, 240, 351, 420, 752, 800, 869
HgaI GACGC 3 cut(s) 211, 379, 467
HhaI GCGC 3 cut(s) 632, 817, 904
Hin1I GRCGYC 2 cut(s) 222, 459
Hin1II CATG 4 cut(s) 237, 302, 733, 862
Hin6I GCGC 3 cut(s) 630, 815, 902
HinP1I GCGC 3 cut(s) 630, 815, 902
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 377, 433, 830, 875, 937
HphI GGTGA 4 cut(s) 22, 98, 140, 906
Hpy166II GTNNAC 4 cut(s) 83, 394, 684, 834
Hpy188I TCNGA 2 cut(s) 205, 936
Hpy188III TCNNGA 4 cut(s) 314, 430, 571, 637
Hpy8I GTNNAC 4 cut(s) 83, 394, 684, 834
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 43, 50, 351
HpyCH4III ACNGT 4 cut(s) 151, 781, 812, 918
HpyCH4IV ACGT 2 cut(s) 740, 836
HpyCH4V TGCA 3 cut(s) 403, 615, 883
HpyF3I CTNAG 2 cut(s) 438, 506
HpySE526I ACGT 2 cut(s) 740, 836
Hsp92I GRCGYC 2 cut(s) 222, 459
Hsp92II CATG 4 cut(s) 237, 302, 733, 862
HspAI GCGC 3 cut(s) 630, 815, 902
Kpn2I TCCGGA 1 cut(s) 429
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 2 cut(s) 495, 948
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 5 cut(s) 324, 337, 343, 492, 654
Lsp1109I GCAGC 8 cut(s) 251, 267, 280, 440, 497, 599, 732, 780
LweI GCATC 4 cut(s) 251, 357, 489, 917
MaeI CTAG 2 cut(s) 275, 536
MaeII ACGT 2 cut(s) 740, 836
MaeIII GTNAC 2 cut(s) 104, 912
MalI GATC 2 cut(s) 497, 950
MboI GATC 2 cut(s) 495, 948
MboII GAAGA 4 cut(s) 28, 205, 591, 595
MhlI GDGCHC 2 cut(s) 213, 321
MlyI GAGTC 2 cut(s) 371, 839
MmeI TCCRAC 1 cut(s) 38
MroI TCCGGA 1 cut(s) 429
MroNI GCCGGC 1 cut(s) 347
MseI TTAA 3 cut(s) 50, 63, 525
MslI CAYNNNNRTG 1 cut(s) 956
MspA1I CMGCKG 3 cut(s) 453, 510, 865
MspR9I CCNGG 7 cut(s) 126, 155, 283, 304, 754, 845, 851
MvaI CCWGG 3 cut(s) 283, 304, 851
NaeI GCCGGC 1 cut(s) 349
NciI CCSGG 4 cut(s) 126, 155, 754, 845
NdeII GATC 2 cut(s) 495, 948
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 4 cut(s) 237, 302, 733, 862
NlaIV GGNNCC 3 cut(s) 333, 339, 488
NmeAIII GCCGAG 2 cut(s) 266, 606
NmuCI GTSAC 2 cut(s) 104, 912
NsbI TGCGCA 1 cut(s) 816
NspI RCATGY 2 cut(s) 237, 862
PaeI GCATGC 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 453
PdiI GCCGGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 433, 875, 937
PflMI CCANNNNNTGG 1 cut(s) 730
PinAI ACCGGT 1 cut(s) 101
PleI GAGTC 2 cut(s) 371, 838
PmaCI CACGTG 1 cut(s) 837
PmlI CACGTG 1 cut(s) 837
PpsI GAGTC 2 cut(s) 371, 838
Ppu21I YACGTR 1 cut(s) 837
Psp124BI GAGCTC 2 cut(s) 213, 321
Psp6I CCWGG 3 cut(s) 281, 302, 849
PspCI CACGTG 1 cut(s) 837
PspEI GGTNACC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 3 cut(s) 281, 302, 849
PspN4I GGNNCC 3 cut(s) 333, 339, 488
PspPI GGNCC 5 cut(s) 157, 418, 751, 798, 847
PstI CTGCAG 1 cut(s) 885
PstNI CAGNNNCTG 1 cut(s) 720
PvuII CAGCTG 2 cut(s) 453, 510
RsaI GTAC 3 cut(s) 134, 770, 809
RsaNI GTAC 3 cut(s) 133, 769, 808
RseI CAYNNNNRTG 1 cut(s) 956
SacI GAGCTC 2 cut(s) 213, 321
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 3 cut(s) 50, 63, 525
Sau3AI GATC 2 cut(s) 495, 948
Sau96I GGNCC 5 cut(s) 157, 418, 751, 798, 847
ScaI AGTACT 1 cut(s) 134
SchI GAGTC 2 cut(s) 371, 839
ScrFI CCNGG 7 cut(s) 126, 155, 283, 304, 754, 845, 851
SduI GDGCHC 2 cut(s) 213, 321
SfaNI GCATC 4 cut(s) 251, 357, 489, 917
SfcI CTRYAG 1 cut(s) 881
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 956
SmlI CTYRAG 2 cut(s) 314, 644
SmoI CTYRAG 2 cut(s) 314, 644
SphI GCATGC 1 cut(s) 237
SspMI CTAG 2 cut(s) 275, 536
SstI GAGCTC 2 cut(s) 213, 321
StyD4I CCNGG 7 cut(s) 124, 153, 281, 302, 752, 843, 849
TaaI ACNGT 4 cut(s) 151, 781, 812, 918
TaiI ACGT 2 cut(s) 743, 839
TaqI TCGA 5 cut(s) 195, 249, 315, 354, 888
TatI WGTACW 2 cut(s) 132, 807
TauI GCSGC 8 cut(s) 222, 240, 281, 480, 521, 566, 594, 865
TfiI GAWTC 3 cut(s) 433, 875, 937
Tru1I TTAA 3 cut(s) 50, 63, 525
Tru9I TTAA 3 cut(s) 50, 63, 525
TscAI CASTG 4 cut(s) 154, 784, 817, 885
TseFI GTSAC 2 cut(s) 104, 912
TseI GCWGC 8 cut(s) 255, 264, 293, 453, 510, 612, 745, 793
Tsp45I GTSAC 2 cut(s) 104, 912
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 4 cut(s) 154, 784, 817, 885
Van91I CCANNNNNTGG 1 cut(s) 730
VpaK11BI GGWCC 1 cut(s) 847
XceI RCATGY 2 cut(s) 237, 862
XhoI CTCGAG 1 cut(s) 314
XspI CTAG 2 cut(s) 275, 536
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.