Rmu_co8294437.1_g000001

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8294437.1
OG0011246
Physical Location & Seq
Forward (+)
136 .. 786
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8294437.1_g000001.1.cds

Sequence Viewer

Length: 651 bp
atgccatcatttccgttcactttcacgctcctcatcttgttgcttctgtcaaccctccacatctcccgagccggtttactcgccgagccggtgaccggtcacggacagcctctcaagccaggcgagtactccagcccaaacacggtcccggcctacccggtccaaacccaggcccagacctgccgcctggacctctccgccgagctcttcggcggcgtcaacgaggcctgcggccgaaacctcgaccggagccgatgctgccccgtcctcgccgcctggctcttcgccgctcacgccaggtcagctctggaaatctcctccgctccggctccttccgccggcggcgaccttccgatgatgccggacgacgcgcagaagtgcgtgaactctctccagacctcgctcctcagccgaaacatccggatcccacagccgaacgccacgtgtgatgccattctctgcttctgtgggatcaggctccaccagatcagctccctcagctgtccggcggcgttcaacgtctccgggttccacaacgccaccccaaccgccgcggtcaagaatctcgaaaggaactgccgtaactcttcctacactggctgcaccaaatgcctcggcgccctccagaaggtcagtttcgtcttttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.0

Weight (kDa)

8.48

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28100
fragaria_vesca FvH4_6g44390
malus_domestica MD09G1097800.v1.1 MD17G1086100.v1.1
prunus_persica Prupe.3G228400_v2.0.a1
pyrus_communis pycom09g02190 pycom17g08360
rosa_chinensis RchiOBHm_Chr2g0161331 RchiOBHm_Chr2g0161381
rosa_laevigata RLG00000021280
rosa_multiflora Rmu_co8294437.1_g000001 Rmu_ssc0000196.1_g000002
rosa_roxburghii Rroxscaffold_2G00088890
rosa_rugosa Rorug02G0488500
rosa_samantha Rh2AG555000 Rh2BG568200 Rh2CG538700 Rh2CG538800 Rh2DG577900
rosa_wichuraiana Rw2G045920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 617
AccBSI CCGCTC 2 cut(s) 290, 323
AccII CGCG 2 cut(s) 371, 554
AccIII TCCGGA 1 cut(s) 420
AclWI GGATC 3 cut(s) 418, 431, 479
AcoI YGGCCR 1 cut(s) 232
AcvI CACGTG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 216, 618
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 5 cut(s) 95, 142, 169, 338, 628
AflIII ACRYGT 1 cut(s) 443
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 517
AjnI CCWGG 5 cut(s) 118, 168, 186, 275, 296
AluBI AGCT 4 cut(s) 205, 305, 492, 501
AluI AGCT 4 cut(s) 205, 305, 492, 501
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 3 cut(s) 418, 431, 479
Ama87I CYCGRG 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 420
AoxI GGCC 4 cut(s) 150, 171, 225, 232
ApeKI GCWGC 2 cut(s) 258, 600
AsiGI ACCGGT 1 cut(s) 95
AspLEI GCGC 2 cut(s) 373, 620
AspS9I GGNCC 4 cut(s) 145, 160, 172, 190
AsuC2I CCSGG 3 cut(s) 149, 158, 526
AsuHPI GGTGA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 3 cut(s) 145, 160, 190
BamHI GGATCC 1 cut(s) 423
BanI GGYRCC 1 cut(s) 617
BanII GRGCYC 1 cut(s) 207
BbrPI CACGTG 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 2 cut(s) 407, 497
BbvI GCAGC 2 cut(s) 245, 587
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 564
BciT130I CCWGG 5 cut(s) 120, 170, 188, 277, 298
BcnI CCSGG 3 cut(s) 149, 158, 526
BcoDI GTCTC 1 cut(s) 526
BfoI RGCGCY 1 cut(s) 621
BfuAI ACCTGC 1 cut(s) 188
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 8 cut(s) 120, 149, 158, 170, 188, 277, 298, 526
Bme18I GGWCC 3 cut(s) 145, 160, 190
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 4 cut(s) 145, 160, 172, 190
BmiI GGNNCC 7 cut(s) 147, 251, 330, 425, 479, 530, 619
BmrFI CCNGG 8 cut(s) 120, 149, 158, 170, 188, 277, 298, 526
BmsI GCATC 3 cut(s) 245, 348, 439
BpmI CTGGAG 3 cut(s) 115, 377, 608
Bpu10I CCTNAGC 2 cut(s) 407, 497
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 3 cut(s) 149, 158, 526
BsaAI YACGTR 1 cut(s) 444
BsaHI GRCGYC 2 cut(s) 216, 618
BsaJI CCNNGG 3 cut(s) 168, 552, 613
BsaWI WCCGGW 3 cut(s) 95, 246, 420
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 142, 169, 338, 628
Bse118I RCCGGY 4 cut(s) 71, 88, 95, 338
Bse1I ACTGG 1 cut(s) 601
BseAI TCCGGA 1 cut(s) 420
BseBI CCWGG 5 cut(s) 120, 170, 188, 277, 298
BseDI CCNNGG 3 cut(s) 168, 552, 613
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 5 cut(s) 95, 142, 169, 338, 628
BseMII CTCAG 2 cut(s) 421, 511
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 3 cut(s) 20, 307, 395
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 245, 587
BsgI GTGCAG 1 cut(s) 586
Bsh1236I CGCG 2 cut(s) 371, 554
Bsh1285I CGRYCG 2 cut(s) 235, 247
BshFI GGCC 4 cut(s) 152, 173, 227, 234
BshNI GGYRCC 1 cut(s) 617
BshTI ACCGGT 1 cut(s) 95
BsiEI CGRYCG 2 cut(s) 235, 247
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 5 cut(s) 95, 142, 169, 338, 628
BsmAI GTCTC 1 cut(s) 526
BsmBI CGTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 4 cut(s) 152, 173, 227, 234
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 420
Bsp143I GATC 3 cut(s) 423, 471, 486
BspANI GGCC 4 cut(s) 152, 173, 227, 234
BspCNI CTCAG 2 cut(s) 420, 510
BspEI TCCGGA 1 cut(s) 420
BspFNI CGCG 2 cut(s) 371, 554
BspLI GGNNCC 7 cut(s) 147, 251, 330, 425, 479, 530, 619
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 3 cut(s) 418, 431, 479
BspQI GCTCTTC 2 cut(s) 212, 287
BspT107I GGYRCC 1 cut(s) 617
BsrBI CCGCTC 2 cut(s) 290, 323
BsrFI RCCGGY 4 cut(s) 71, 88, 95, 338
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 4 cut(s) 71, 88, 95, 338
BssECI CCNNGG 3 cut(s) 168, 552, 613
BssMI GATC 3 cut(s) 423, 471, 486
BssNI GRCGYC 2 cut(s) 216, 618
Bst2UI CCWGG 5 cut(s) 120, 170, 188, 277, 298
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 3 cut(s) 212, 287, 592
BstACI GRCGYC 2 cut(s) 216, 618
BstAPI GCANNNNNTGC 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 229, 340
BstDEI CTNAG 2 cut(s) 407, 497
BstDSI CCRYGG 1 cut(s) 552
BstEII GGTNACC 1 cut(s) 91
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 2 cut(s) 371, 554
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 2 cut(s) 373, 620
BstKTI GATC 3 cut(s) 426, 474, 489
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 3 cut(s) 423, 471, 486
BstMCI CGRYCG 2 cut(s) 235, 247
BstMWI GCNNNNNNNGC 7 cut(s) 115, 258, 293, 302, 335, 498, 609
BstNI CCWGG 5 cut(s) 120, 170, 188, 277, 298
BstPI GGTNACC 1 cut(s) 91
BstSCI CCNGG 8 cut(s) 118, 147, 156, 168, 186, 275, 296, 524
BstUI CGCG 2 cut(s) 371, 554
BstV1I GCAGC 2 cut(s) 245, 587
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
BstZI CGGCCG 1 cut(s) 232
BsuRI GGCC 4 cut(s) 152, 173, 227, 234
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 594
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 229, 340
CfoI GCGC 2 cut(s) 373, 620
Cfr10I RCCGGY 4 cut(s) 71, 88, 95, 338
Cfr13I GGNCC 4 cut(s) 145, 160, 172, 190
Cfr42I CCGCGG 1 cut(s) 555
CseI GACGC 2 cut(s) 205, 377
Csp6I GTAC 1 cut(s) 127
CspAI ACCGGT 1 cut(s) 95
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 407, 497
DinI GGCGCC 1 cut(s) 619
DpnI GATC 3 cut(s) 425, 473, 488
DpnII GATC 3 cut(s) 423, 471, 486
EaeI YGGCCR 1 cut(s) 232
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 3 cut(s) 212, 287, 592
EarI CTCTTC 3 cut(s) 212, 287, 592
EciI GGCGGA 2 cut(s) 187, 325
Ecl136II GAGCTC 1 cut(s) 205
EclXI CGGCCG 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 3 cut(s) 145, 160, 190
Eco52I CGGCCG 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO65I GGTNACC 1 cut(s) 91
EcoRII CCWGG 5 cut(s) 118, 168, 186, 275, 296
EcoT38I GRGCYC 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 619
EheI GGCGCC 1 cut(s) 619
Esp3I CGTCTC 1 cut(s) 526
FaiI YATR 1 cut(s) 649
FaqI GGGAC 1 cut(s) 131
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 1 cut(s) 207
GlaI GCGC 2 cut(s) 372, 619
GsuI CTGGAG 3 cut(s) 115, 377, 608
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 4 cut(s) 152, 173, 227, 234
HgaI GACGC 2 cut(s) 205, 377
HhaI GCGC 2 cut(s) 373, 620
Hin1I GRCGYC 2 cut(s) 216, 618
Hin6I GCGC 2 cut(s) 371, 618
HinP1I GCGC 2 cut(s) 371, 618
HincII GTYRAC 2 cut(s) 51, 220
HindII GTYRAC 2 cut(s) 51, 220
HinfI GANTC 1 cut(s) 562
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 5 cut(s) 18, 51, 77, 220, 385
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 7 cut(s) 66, 308, 394, 421, 559, 566, 625
Hpy8I GTNNAC 5 cut(s) 18, 51, 77, 220, 385
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 342, 359, 622
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 443, 519
HpyCH4V TGCA 1 cut(s) 603
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 258, 293, 302, 335, 498, 609
HpyF3I CTNAG 2 cut(s) 407, 497
HpySE526I ACGT 2 cut(s) 443, 519
Hsp92I GRCGYC 2 cut(s) 216, 618
HspAI GCGC 2 cut(s) 371, 618
KasI GGCGCC 1 cut(s) 617
Kpn2I TCCGGA 1 cut(s) 420
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
KspI CCGCGG 1 cut(s) 555
Kzo9I GATC 3 cut(s) 423, 471, 486
LguI GCTCTTC 2 cut(s) 212, 287
LmnI GCTCC 7 cut(s) 33, 249, 328, 334, 408, 483, 497
Lsp1109I GCAGC 2 cut(s) 245, 587
LweI GCATC 3 cut(s) 245, 348, 439
MaeII ACGT 2 cut(s) 443, 519
MaeIII GTNAC 3 cut(s) 91, 98, 581
MalI GATC 3 cut(s) 425, 473, 488
MbiI CCGCTC 2 cut(s) 290, 323
MboI GATC 3 cut(s) 423, 471, 486
MboII GAAGA 3 cut(s) 199, 274, 579
MflI RGATCY 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 207
Mly113I GGCGCC 1 cut(s) 618
MreI CGCCGGCG 1 cut(s) 338
MroI TCCGGA 1 cut(s) 420
MroNI GCCGGC 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 501, 554
MspR9I CCNGG 8 cut(s) 120, 149, 158, 170, 188, 277, 298, 526
MvaI CCWGG 5 cut(s) 120, 170, 188, 277, 298
MvnI CGCG 2 cut(s) 371, 554
MwoI GCNNNNNNNGC 7 cut(s) 115, 258, 293, 302, 335, 498, 609
NaeI GCCGGC 1 cut(s) 340
NarI GGCGCC 1 cut(s) 618
NciI CCSGG 3 cut(s) 149, 158, 526
NdeII GATC 3 cut(s) 423, 471, 486
NgoMIV GCCGGC 1 cut(s) 338
NlaIV GGNNCC 7 cut(s) 147, 251, 330, 425, 479, 530, 619
NmeAIII GCCGAG 3 cut(s) 109, 226, 594
NmuCI GTSAC 2 cut(s) 91, 98
PceI AGGCCT 1 cut(s) 227
PciSI GCTCTTC 2 cut(s) 212, 287
PdiI GCCGGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 562
PinAI ACCGGT 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 621
PmaCI CACGTG 1 cut(s) 444
PmlI CACGTG 1 cut(s) 444
Ppu21I YACGTR 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 5 cut(s) 118, 168, 186, 275, 296
PspCI CACGTG 1 cut(s) 444
PspEI GGTNACC 1 cut(s) 91
PspGI CCWGG 5 cut(s) 118, 168, 186, 275, 296
PspN4I GGNNCC 7 cut(s) 147, 251, 330, 425, 479, 530, 619
PspPI GGNCC 4 cut(s) 145, 160, 172, 190
PsuI RGATCY 1 cut(s) 423
PvuII CAGCTG 1 cut(s) 501
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SacI GAGCTC 1 cut(s) 207
SacII CCGCGG 1 cut(s) 555
SapI GCTCTTC 2 cut(s) 212, 287
Sau3AI GATC 3 cut(s) 423, 471, 486
Sau96I GGNCC 4 cut(s) 145, 160, 172, 190
ScaI AGTACT 1 cut(s) 128
ScrFI CCNGG 8 cut(s) 120, 149, 158, 170, 188, 277, 298, 526
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 3 cut(s) 245, 348, 439
SfoI GGCGCC 1 cut(s) 619
Sfr303I CCGCGG 1 cut(s) 555
SgrAI CRCCGGYG 1 cut(s) 338
SgrBI CCGCGG 1 cut(s) 555
SinI GGWCC 3 cut(s) 145, 160, 190
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 227
SspDI GGCGCC 1 cut(s) 617
SstI GAGCTC 1 cut(s) 207
StuI AGGCCT 1 cut(s) 227
StyD4I CCNGG 8 cut(s) 118, 147, 156, 168, 186, 275, 296, 524
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 446, 522
TaqI TCGA 2 cut(s) 243, 567
TatI WGTACW 1 cut(s) 126
TauI GCSGC 8 cut(s) 186, 216, 234, 275, 290, 345, 512, 554
TfiI GAWTC 1 cut(s) 562
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 2 cut(s) 91, 98
TseI GCWGC 2 cut(s) 258, 600
Tsp45I GTSAC 2 cut(s) 91, 98
TspDTI ATGAA 1 cut(s) 636
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 145, 160, 190
XagI CCTNNNNNAGG 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.