Rh2CG538700

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011246
Physical Location & Seq
Reverse (-)
71608425 .. 71609337
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG538700.1

Sequence Viewer

Length: 687 bp
ATGAATGTATTGCGCAGAGCCGTGAGGTCAGCTCTGGAAATCTCCTCCGCTCCGGCTCCTTCAGCCGGCGGCGACCTTCCGATGATGCCGGACGATGCGCAGAAGTGCGTGAACTCTCTCCAGACCTCGCTCCTCAGCCGAAACATCCGGATCCCACAGCCGAACGCCACGTGTGACGCCATTCTCTGCTTCTGTGGGATCAGGCTCCACCAGATCAGCTCCCTCAGCTGTCCGGCGGCGTTCAACGTCTCCGGGTTCCACAACGCCACCCCAACCGCCGCGGTCAAGAATCTCGAAAGGAACTGCCGTAACTCTTCCTACACTGGCTGCACCAAATGCCTCGGCGCCCTCCAGAAGCTGAAGGGCGGGACGAGCAAGAACGGAACAACGAGGGACAAGAGCACGAGCGAGAGGGCGGGCAAGATGTTCGACCGGGACTGCCAGCTCATGGGCCTGACGTGGCTGCTGGCGAAGAACAAGACGGCCCACATTCCGACCGTCTCCGCCGTGTTGCGCGCCATAATGTACAGCGCTCACCCGCCGCACGAGAACACGTGCAGCCCGGACCAGGAGAACATGCCGCTGGCCGTTGAATCCTTGCAGTTTGACAAGTCGTCATCGCCGGCGTCGGTGTCTTTGTTTCCGGTTGTGCCCCTAATCACGGTTTTGGTTTCTCTGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

24.45

Weight (kDa)

9.1

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28100
fragaria_vesca FvH4_6g44390
malus_domestica MD09G1097800.v1.1 MD17G1086100.v1.1
prunus_persica Prupe.3G228400_v2.0.a1
pyrus_communis pycom09g02190 pycom17g08360
rosa_chinensis RchiOBHm_Chr2g0161331 RchiOBHm_Chr2g0161381
rosa_laevigata RLG00000021280
rosa_multiflora Rmu_co8294437.1_g000001 Rmu_ssc0000196.1_g000002
rosa_roxburghii Rroxscaffold_2G00088890
rosa_rugosa Rorug02G0488500
rosa_samantha Rh2AG555000 Rh2BG568200 Rh2CG538700 Rh2CG538800 Rh2DG577900
rosa_wichuraiana Rw2G045920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 14, 99
AccB1I GGYRCC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 448
AccBSI CCGCTC 1 cut(s) 50
AccII CGCG 2 cut(s) 281, 516
AccIII TCCGGA 1 cut(s) 147
AclWI GGATC 3 cut(s) 145, 158, 206
AcoI YGGCCR 1 cut(s) 585
AcuI CTGAAG 2 cut(s) 45, 380
AcvI CACGTG 2 cut(s) 171, 555
AcyI GRCGYC 3 cut(s) 177, 345, 626
AfaI GTAC 1 cut(s) 527
AfeI AGCGCT 1 cut(s) 532
AfiI CCNNNNNNNGG 4 cut(s) 65, 448, 568, 661
AflIII ACRYGT 2 cut(s) 170, 552
AgsI TTSAA 2 cut(s) 244, 593
AhdI GACNNNNNGTC 1 cut(s) 613
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 5 cut(s) 32, 219, 228, 358, 445
AluI AGCT 5 cut(s) 32, 219, 228, 358, 445
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 2 cut(s) 253, 505
AlwI GGATC 3 cut(s) 145, 158, 206
AlwNI CAGNNNCTG 1 cut(s) 358
Aor13HI TCCGGA 1 cut(s) 147
Aor51HI AGCGCT 1 cut(s) 532
AoxI GGCC 3 cut(s) 451, 483, 585
ApeKI GCWGC 3 cut(s) 327, 463, 558
AspLEI GCGC 6 cut(s) 15, 100, 347, 516, 518, 533
AspS9I GGNCC 3 cut(s) 451, 484, 565
AsuC2I CCSGG 3 cut(s) 253, 434, 563
AsuHPI GGTGA 1 cut(s) 527
AvaII GGWCC 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 654
BamHI GGATCC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 344
BauI CACGAG 2 cut(s) 403, 545
BbrPI CACGTG 2 cut(s) 171, 555
Bbv12I GWGCWC 1 cut(s) 404
BbvCI CCTCAGC 2 cut(s) 134, 224
BbvI GCAGC 3 cut(s) 314, 450, 570
BceAI ACGGC 5 cut(s) 5, 291, 491, 498, 572
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 569
BcnI CCSGG 3 cut(s) 253, 434, 563
BcoDI GTCTC 2 cut(s) 253, 505
BfoI RGCGCY 2 cut(s) 348, 534
BisI GCNGC 8 cut(s) 70, 237, 279, 328, 464, 542, 559, 581
BlsI GCNGC 8 cut(s) 71, 238, 280, 329, 465, 543, 560, 582
Bme1390I CCNGG 4 cut(s) 253, 434, 563, 569
Bme18I GGWCC 1 cut(s) 565
BmeRI GACNNNNNGTC 1 cut(s) 613
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 3 cut(s) 451, 484, 565
BmiI GGNNCC 5 cut(s) 57, 152, 206, 257, 346
BmrFI CCNGG 4 cut(s) 253, 434, 563, 569
BmsI GCATC 2 cut(s) 75, 85
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpmI CTGGAG 2 cut(s) 104, 335
Bpu10I CCTNAGC 2 cut(s) 134, 224
BpuMI CCSGG 3 cut(s) 253, 434, 563
BsaAI YACGTR 2 cut(s) 171, 555
BsaHI GRCGYC 3 cut(s) 177, 345, 626
BsaJI CCNNGG 2 cut(s) 279, 340
BsaWI WCCGGW 2 cut(s) 147, 643
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 448, 568, 661
Bse118I RCCGGY 2 cut(s) 65, 622
Bse1I ACTGG 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 279, 340
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 65, 448, 568, 661
BseMII CTCAG 2 cut(s) 148, 238
BseNI ACTGG 1 cut(s) 328
BsePI GCGCGC 1 cut(s) 514
BseRI GAGGAG 2 cut(s) 34, 122
BseSI GKGCMC 1 cut(s) 654
BseXI GCAGC 3 cut(s) 314, 450, 570
BsgI GTGCAG 2 cut(s) 313, 577
Bsh1236I CGCG 2 cut(s) 281, 516
Bsh1285I CGRYCG 2 cut(s) 433, 498
BshFI GGCC 3 cut(s) 453, 485, 587
BshNI GGYRCC 1 cut(s) 344
BsiEI CGRYCG 2 cut(s) 433, 498
BsiHKAI GWGCWC 1 cut(s) 404
BslFI GGGAC 3 cut(s) 382, 407, 449
BslI CCNNNNNNNGG 4 cut(s) 65, 448, 568, 661
BsmAI GTCTC 2 cut(s) 253, 505
BsmBI CGTCTC 2 cut(s) 253, 505
BsmFI GGGAC 3 cut(s) 382, 407, 449
BsnI GGCC 3 cut(s) 453, 485, 587
Bsp1286I GDGCHC 2 cut(s) 404, 654
Bsp13I TCCGGA 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 3 cut(s) 150, 198, 213
BspANI GGCC 3 cut(s) 453, 485, 587
BspCNI CTCAG 2 cut(s) 147, 237
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 2 cut(s) 281, 516
BspLI GGNNCC 5 cut(s) 57, 152, 206, 257, 346
BspPI GGATC 3 cut(s) 145, 158, 206
BspT107I GGYRCC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 50
BsrFI RCCGGY 2 cut(s) 65, 622
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 2 cut(s) 65, 622
BssECI CCNNGG 2 cut(s) 279, 340
BssHII GCGCGC 1 cut(s) 514
BssMI GATC 3 cut(s) 150, 198, 213
BssNI GRCGYC 3 cut(s) 177, 345, 626
BssSI CACGAG 2 cut(s) 403, 545
Bst2BI CACGAG 2 cut(s) 403, 545
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 499, 664
Bst6I CTCTTC 1 cut(s) 319
BstACI GRCGYC 3 cut(s) 177, 345, 626
BstAPI GCANNNNNTGC 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 525
BstBAI YACGTR 2 cut(s) 171, 555
BstC8I GCNNGC 7 cut(s) 67, 418, 443, 468, 516, 585, 624
BstDEI CTNAG 2 cut(s) 134, 224
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 2 cut(s) 281, 516
BstH2I RGCGCY 2 cut(s) 348, 534
BstHHI GCGC 6 cut(s) 15, 100, 347, 516, 518, 533
BstKTI GATC 3 cut(s) 153, 201, 216
BstMAI GTCTC 2 cut(s) 253, 505
BstMBI GATC 3 cut(s) 150, 198, 213
BstMCI CGRYCG 2 cut(s) 433, 498
BstMWI GCNNNNNNNGC 4 cut(s) 62, 225, 336, 372
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 4 cut(s) 251, 432, 561, 567
BstSLI GKGCMC 1 cut(s) 654
BstUI CGCG 2 cut(s) 281, 516
BstV1I GCAGC 3 cut(s) 314, 450, 570
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 3 cut(s) 453, 485, 587
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 459
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 7 cut(s) 67, 418, 443, 468, 516, 585, 624
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 6 cut(s) 15, 100, 347, 516, 518, 533
Cfr10I RCCGGY 2 cut(s) 65, 622
Cfr13I GGNCC 3 cut(s) 451, 484, 565
Cfr42I CCGCGG 1 cut(s) 282
CseI GACGC 2 cut(s) 185, 615
Csp6I GTAC 1 cut(s) 526
CviAII CATG 2 cut(s) 448, 577
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 134, 224
DinI GGCGCC 1 cut(s) 346
DpnI GATC 3 cut(s) 152, 200, 215
DpnII GATC 3 cut(s) 150, 198, 213
DriI GACNNNNNGTC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 319
Eam1105I GACNNNNNGTC 1 cut(s) 613
EarI CTCTTC 1 cut(s) 319
EciI GGCGGA 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 565
Eco47III AGCGCT 1 cut(s) 532
Eco57I CTGAAG 2 cut(s) 45, 380
Eco72I CACGTG 2 cut(s) 171, 555
EcoRII CCWGG 1 cut(s) 567
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
Esp3I CGTCTC 2 cut(s) 253, 505
FaeI CATG 2 cut(s) 451, 580
FaiI YATR 3 cut(s) 449, 521, 578
FaqI GGGAC 3 cut(s) 382, 407, 449
FatI CATG 2 cut(s) 447, 576
FauI CCCGC 3 cut(s) 359, 409, 546
Fnu4HI GCNGC 8 cut(s) 70, 237, 279, 328, 464, 542, 559, 581
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 8 cut(s) 70, 237, 279, 328, 464, 542, 559, 581
FspI TGCGCA 2 cut(s) 14, 99
GlaI GCGC 6 cut(s) 14, 99, 346, 515, 517, 532
GluI GCNGC 8 cut(s) 70, 237, 279, 328, 464, 542, 559, 581
GsuI CTGGAG 2 cut(s) 104, 335
HaeII RGCGCY 2 cut(s) 348, 534
HaeIII GGCC 3 cut(s) 453, 485, 587
HgaI GACGC 2 cut(s) 185, 615
HhaI GCGC 6 cut(s) 15, 100, 347, 516, 518, 533
Hin1I GRCGYC 3 cut(s) 177, 345, 626
Hin1II CATG 2 cut(s) 451, 580
Hin6I GCGC 6 cut(s) 13, 98, 345, 514, 516, 531
HinP1I GCGC 6 cut(s) 13, 98, 345, 514, 516, 531
HinfI GANTC 2 cut(s) 289, 593
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 81, 495
Hpy188III TCNNGA 6 cut(s) 35, 121, 148, 286, 293, 352
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 3 cut(s) 69, 86, 355
HpyCH4III ACNGT 2 cut(s) 499, 664
HpyCH4IV ACGT 4 cut(s) 170, 246, 458, 554
HpyCH4V TGCA 3 cut(s) 330, 558, 601
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 225, 336, 372
HpyF3I CTNAG 2 cut(s) 134, 224
HpySE526I ACGT 4 cut(s) 170, 246, 458, 554
Hsp92I GRCGYC 3 cut(s) 177, 345, 626
Hsp92II CATG 2 cut(s) 451, 580
HspAI GCGC 6 cut(s) 13, 98, 345, 514, 516, 531
KasI GGCGCC 1 cut(s) 344
Kpn2I TCCGGA 1 cut(s) 147
KroI GCCGGC 2 cut(s) 65, 622
KroNI GCCGGC 2 cut(s) 67, 624
KspI CCGCGG 1 cut(s) 282
Kzo9I GATC 3 cut(s) 150, 198, 213
LmnI GCTCC 5 cut(s) 55, 61, 135, 210, 224
Lsp1109I GCAGC 3 cut(s) 314, 450, 570
LweI GCATC 2 cut(s) 75, 85
MaeII ACGT 4 cut(s) 170, 246, 458, 554
MaeIII GTNAC 2 cut(s) 173, 308
MalI GATC 3 cut(s) 152, 200, 215
MbiI CCGCTC 1 cut(s) 50
MboI GATC 3 cut(s) 150, 198, 213
MboII GAAGA 2 cut(s) 306, 484
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 404, 654
Mly113I GGCGCC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 9 cut(s) 18, 55, 136, 143, 233, 350, 359, 384, 405
MreI CGCCGGCG 1 cut(s) 622
MroI TCCGGA 1 cut(s) 147
MroNI GCCGGC 2 cut(s) 65, 622
MspA1I CMGCKG 3 cut(s) 228, 281, 583
MspR9I CCNGG 4 cut(s) 253, 434, 563, 569
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 2 cut(s) 281, 516
MwoI GCNNNNNNNGC 4 cut(s) 62, 225, 336, 372
NaeI GCCGGC 2 cut(s) 67, 624
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 3 cut(s) 253, 434, 563
NdeII GATC 3 cut(s) 150, 198, 213
NgoMIV GCCGGC 2 cut(s) 65, 622
NlaIII CATG 2 cut(s) 451, 580
NlaIV GGNNCC 5 cut(s) 57, 152, 206, 257, 346
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 173
NsbI TGCGCA 2 cut(s) 14, 99
NspI RCATGY 1 cut(s) 580
PauI GCGCGC 1 cut(s) 514
PdiI GCCGGC 2 cut(s) 67, 624
PfeI GAWTC 2 cut(s) 289, 593
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 8 cut(s) 71, 238, 280, 329, 465, 543, 560, 582
PluTI GGCGCC 1 cut(s) 348
PmaCI CACGTG 2 cut(s) 171, 555
PmlI CACGTG 2 cut(s) 171, 555
Ppu21I YACGTR 2 cut(s) 171, 555
Psp6I CCWGG 1 cut(s) 567
PspCI CACGTG 2 cut(s) 171, 555
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 5 cut(s) 57, 152, 206, 257, 346
PspPI GGNCC 3 cut(s) 451, 484, 565
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 150
PteI GCGCGC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 228
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
SacII CCGCGG 1 cut(s) 282
SatI GCNGC 8 cut(s) 70, 237, 279, 328, 464, 542, 559, 581
Sau3AI GATC 3 cut(s) 150, 198, 213
Sau96I GGNCC 3 cut(s) 451, 484, 565
ScrFI CCNGG 4 cut(s) 253, 434, 563, 569
SduI GDGCHC 2 cut(s) 404, 654
SfaNI GCATC 2 cut(s) 75, 85
SfoI GGCGCC 1 cut(s) 346
Sfr303I CCGCGG 1 cut(s) 282
SgrAI CRCCGGYG 1 cut(s) 622
SgrBI CCGCGG 1 cut(s) 282
SinI GGWCC 1 cut(s) 565
SspDI GGCGCC 1 cut(s) 344
StyD4I CCNGG 4 cut(s) 251, 432, 561, 567
TaaI ACNGT 2 cut(s) 499, 664
TaiI ACGT 4 cut(s) 173, 249, 461, 557
TaqI TCGA 2 cut(s) 294, 429
TatI WGTACW 1 cut(s) 525
TauI GCSGC 5 cut(s) 72, 239, 281, 544, 583
TfiI GAWTC 2 cut(s) 289, 593
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 3 cut(s) 327, 463, 558
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 565
XceI RCATGY 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.