Rmu_ssc0000196.1_g000002

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000196.1
OG0011246
Physical Location & Seq
Forward (+)
7806 .. 8135
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000196.1_g000002.1.cds

Sequence Viewer

Length: 330 bp
ctgaagggcgggacgagcaagaacggaacaacgagggacaagagcacgagcgagagggcgggcaagatgttcgaccgggactgccagctcatggggctgacgtggctgctggcgaagaacaagacggcccacattccgaccgtctccgccgtgttgcgcgccataatgtacagcgctcacccgccgcacgagaacacgtgcagcccggaccaagagaacatgccgctggccgttgattccttgcagtttgacaagtcgtcatcgccggcgtcggtgtctttgtttccggttgtgcccctaatcacggttttggtttctctgtttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.8

Weight (kDa)

8.71

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011246)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28100
fragaria_vesca FvH4_6g44390
malus_domestica MD09G1097800.v1.1 MD17G1086100.v1.1
prunus_persica Prupe.3G228400_v2.0.a1
pyrus_communis pycom09g02190 pycom17g08360
rosa_chinensis RchiOBHm_Chr2g0161331 RchiOBHm_Chr2g0161381
rosa_laevigata RLG00000021280
rosa_multiflora Rmu_co8294437.1_g000001 Rmu_ssc0000196.1_g000002
rosa_roxburghii Rroxscaffold_2G00088890
rosa_rugosa Rorug02G0488500
rosa_samantha Rh2AG555000 Rh2BG568200 Rh2CG538700 Rh2CG538800 Rh2DG577900
rosa_wichuraiana Rw2G045920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AccII CGCG 1 cut(s) 159
AciI CCGC 6 cut(s) 9, 59, 147, 182, 185, 224
AcoI YGGCCR 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 23
AcvI CACGTG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 175
AfiI CCNNNNNNNGG 2 cut(s) 91, 304
AflIII ACRYGT 1 cut(s) 195
AhdI GACNNNNNGTC 1 cut(s) 256
AjiI CACGTC 1 cut(s) 102
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 148
Aor51HI AGCGCT 1 cut(s) 175
AoxI GGCC 2 cut(s) 126, 228
ApeKI GCWGC 2 cut(s) 106, 201
AspLEI GCGC 3 cut(s) 159, 161, 176
AspS9I GGNCC 2 cut(s) 127, 208
AsuC2I CCSGG 2 cut(s) 77, 206
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 297
BauI CACGAG 2 cut(s) 46, 188
BbrPI CACGTG 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 93, 213
BceAI ACGGC 3 cut(s) 134, 141, 215
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BcnI CCSGG 2 cut(s) 77, 206
BcoDI GTCTC 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 4 cut(s) 107, 185, 202, 224
BlsI GCNGC 4 cut(s) 108, 186, 203, 225
Bme1390I CCNGG 2 cut(s) 77, 206
Bme18I GGWCC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 127, 208
BmrFI CCNGG 2 cut(s) 77, 206
BpuMI CCSGG 2 cut(s) 77, 206
BsaAI YACGTR 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 269
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 304
Bse118I RCCGGY 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 91, 304
BsePI GCGCGC 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 2 cut(s) 93, 213
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 159
Bsh1285I CGRYCG 2 cut(s) 76, 141
BshFI GGCC 2 cut(s) 128, 230
BsiEI CGRYCG 2 cut(s) 76, 141
BsiHKAI GWGCWC 1 cut(s) 47
BsiSI CCGG 4 cut(s) 76, 206, 266, 287
BslFI GGGAC 3 cut(s) 25, 50, 92
BslI CCNNNNNNNGG 2 cut(s) 91, 304
BsmAI GTCTC 1 cut(s) 148
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 3 cut(s) 25, 50, 92
BsnI GGCC 2 cut(s) 128, 230
Bsp1286I GDGCHC 2 cut(s) 47, 297
Bsp1407I TGTACA 1 cut(s) 168
BspACI CCGC 6 cut(s) 9, 59, 147, 182, 185, 224
BspANI GGCC 2 cut(s) 128, 230
BspFNI CGCG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 265
BssHII GCGCGC 1 cut(s) 157
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 2 cut(s) 46, 188
Bst2BI CACGAG 2 cut(s) 46, 188
Bst4CI ACNGT 2 cut(s) 142, 307
BstACI GRCGYC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 198
BstC8I GCNNGC 6 cut(s) 61, 86, 111, 159, 228, 267
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 3 cut(s) 159, 161, 176
BstMAI GTCTC 1 cut(s) 148
BstMCI CGRYCG 2 cut(s) 76, 141
BstMWI GCNNNNNNNGC 3 cut(s) 15, 94, 103
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 75, 204
BstSLI GKGCMC 1 cut(s) 297
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 93, 213
BsuRI GGCC 2 cut(s) 128, 230
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 102
Cac8I GCNNGC 6 cut(s) 61, 86, 111, 159, 228, 267
CfoI GCGC 3 cut(s) 159, 161, 176
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 127, 208
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 91, 220
CviJI RGCY 6 cut(s) 88, 97, 106, 128, 204, 230
CviKI_1 RGCY 6 cut(s) 88, 97, 106, 128, 204, 230
CviQI GTAC 1 cut(s) 169
DriI GACNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 256
EciI GGCGGA 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 23
Eco72I CACGTG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 2 cut(s) 94, 223
FaiI YATR 3 cut(s) 92, 164, 221
FaqI GGGAC 3 cut(s) 25, 50, 92
FatI CATG 2 cut(s) 90, 219
FauI CCCGC 3 cut(s) 2, 52, 189
Fnu4HI GCNGC 4 cut(s) 107, 185, 202, 224
Fsp4HI GCNGC 4 cut(s) 107, 185, 202, 224
GlaI GCGC 3 cut(s) 158, 160, 175
GluI GCNGC 4 cut(s) 107, 185, 202, 224
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 128, 230
HapII CCGG 4 cut(s) 76, 206, 266, 287
HgaI GACGC 1 cut(s) 258
HhaI GCGC 3 cut(s) 159, 161, 176
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 2 cut(s) 94, 223
Hin6I GCGC 3 cut(s) 157, 159, 174
HinP1I GCGC 3 cut(s) 157, 159, 174
HinfI GANTC 1 cut(s) 236
HpaII CCGG 4 cut(s) 76, 206, 266, 287
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 142, 307
HpyCH4IV ACGT 2 cut(s) 101, 197
HpyCH4V TGCA 2 cut(s) 201, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 94, 103
HpySE526I ACGT 2 cut(s) 101, 197
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 2 cut(s) 94, 223
HspAI GCGC 3 cut(s) 157, 159, 174
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
LpnPI CCDG 7 cut(s) 89, 95, 98, 212, 219, 279, 300
Lsp1109I GCAGC 2 cut(s) 93, 213
MaeII ACGT 2 cut(s) 101, 197
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 47, 297
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 2 cut(s) 27, 48
MreI CGCCGGCG 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 265
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 4 cut(s) 76, 206, 266, 287
MspR9I CCNGG 2 cut(s) 77, 206
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 15, 94, 103
NaeI GCCGGC 1 cut(s) 267
NciI CCSGG 2 cut(s) 77, 206
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 2 cut(s) 94, 223
NspI RCATGY 1 cut(s) 223
PauI GCGCGC 1 cut(s) 157
PdiI GCCGGC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 4 cut(s) 108, 186, 203, 225
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
Ppu21I YACGTR 1 cut(s) 198
PspCI CACGTG 1 cut(s) 198
PspPI GGNCC 2 cut(s) 127, 208
PteI GCGCGC 1 cut(s) 157
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 4 cut(s) 107, 185, 202, 224
Sau96I GGNCC 2 cut(s) 127, 208
ScrFI CCNGG 2 cut(s) 77, 206
SduI GDGCHC 2 cut(s) 47, 297
SetI ASST 3 cut(s) 90, 104, 200
SgrAI CRCCGGYG 1 cut(s) 265
SinI GGWCC 1 cut(s) 208
SsiI CCGC 6 cut(s) 9, 59, 147, 182, 185, 224
StyD4I CCNGG 2 cut(s) 75, 204
TaaI ACNGT 2 cut(s) 142, 307
TaiI ACGT 2 cut(s) 104, 200
TaqI TCGA 1 cut(s) 72
TatI WGTACW 1 cut(s) 168
TauI GCSGC 2 cut(s) 187, 226
TfiI GAWTC 1 cut(s) 236
TseI GCWGC 2 cut(s) 106, 201
TspGWI ACGGA 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 208
XceI RCATGY 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.