Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006374

Physical Location & Seq

Genomic Coordinates Reverse (-)

8018549 .. 8024736

Gene Structure 6188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1108300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAGCTGCATTCTCTGATGTTAATGCAGATCCAAGAATACTCAGTGGGACGGAGCTGAGGTTGCTTATGGAGAATACAAATTCTAGCGTGTTCTTGGGATCCGTTGAAGTTTTTCAGGTGCTTGACAAAAGTATAGTAGCCATAATCGGACCACAGACCTCTTCAATGGCTCATATGATCTCTGAAATTGCTAATGGTCTCCAAGTACCTCTTATCTCATATACCGCAACTGATCCTACTCTTTCTGCTCTCCAATTCCCATTCTTTCTCCGAACTACACAAGGCGATGCTCACCAAATGGCTGCTATGGCTGGTTTGATTGATTTTTACGGGTGGAAAGAGGTTATTGCTGTCTTTGTGGATGACGATTATGGGAGGAATGGAATATCTGCTTTACATGATGGACTTGACAAAACAACGTCAAGGATTTCTCATAACTTGACTTTGCCTGTCCAATATAATTTAAATGACATTGCTGATTTGCTCAATAAATCCAGATTTCTTGGCCCTCGTGTCTATATTGTTCATGTTGATCCCGATCCTAGGTCGAGAATCTTTACTGTCGCCAAAGAACTTCATATGATGACAAGCAATTATGTGTGGTTTGCAACAGATTGGCCTTCTACCACAGTAGATTCATTCTCTCCAATGAACCGAACTTCACTCACTGCCCTTCAAGGTGTAGTTACTTTACGTAAGCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030054 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

237

Amino Acids

26.16

Weight (kDa)

5.39

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 235	6.3e-59	Receptor family ligand binding region
Peripla_BP_6	PF13458	2 - 192	9.1e-09	Periplasmic binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32400
fragaria_vesca	FvH4_6g43290 FvH4_6g43290 FvH4_6g43290 FvH4_6g43290
malus_domestica	MD09G1070000.v1.1 MD09G1108300.v1.1 MD17G1096200.v1.1
prunus_persica	Prupe.3G217800_v2.0.a1 Prupe.3G217800_v2.0.a1 Prupe.3G217800_v2.0.a1
pyrus_communis	pycom09g03020 pycom09g03080 pycom17g09230
rosa_chinensis	RchiOBHm_Chr2g0159561
rosa_laevigata	RLG00000021166
rosa_multiflora	Rmu_sc0012414.1_g000014 Rmu_sc0012414.1_g000015
rosa_roxburghii	Rroxscaffold_2G00090400
rosa_rugosa	Rorug02G0476900 Rorug02G0476900
rosa_samantha	Rh2AG543800 Rh2AG544100 Rh2BG556900 Rh2CG527100 Rh2DG565900
rosa_wichuraiana	Rw2G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	6 cut(s)	26, 96, 109, 230, 530, 536
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	110, 168, 680
AluBI	AGCT	2 cut(s)	8, 58
AluI	AGCT	2 cut(s)	8, 58
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	6 cut(s)	26, 96, 109, 230, 530, 536
AoxI	GGCC	2 cut(s)	508, 620
ApeKI	GCWGC	2 cut(s)	8, 305
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	114
AspA2I	CCTAGG	1 cut(s)	545
AspS9I	GGNCC	2 cut(s)	152, 509
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	152
AvrII	CCTAGG	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	101
BauI	CACGAG	1 cut(s)	513
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	87, 546
BisI	GCNGC	2 cut(s)	9, 306
BlnI	CCTAGG	1 cut(s)	545
BlsI	GCNGC	2 cut(s)	10, 307
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 509
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	50, 58
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	2 cut(s)	510, 622
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	510, 622
Bso31I	GGTCTC	1 cut(s)	206
Bsp143I	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	2 cut(s)	510, 622
BspCNI	CTCAG	2 cut(s)	51, 57
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	6 cut(s)	26, 96, 109, 230, 530, 536
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
BssSI	CACGAG	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	565, 634
Bst6I	CTCTTC	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	698
BstDEI	CTNAG	2 cut(s)	44, 59
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	6 cut(s)	34, 104, 183, 238, 538, 544
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 311
BstSNI	TACGTA	1 cut(s)	698
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	31, 101
BstYI	RGATCY	2 cut(s)	31, 101
BsuRI	GGCC	2 cut(s)	510, 622
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	2 cut(s)	52, 669
Cfr13I	GGNCC	2 cut(s)	152, 509
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	401, 530
CviJI	RGCY	8 cut(s)	8, 58, 143, 173, 305, 314, 510, 622
CviKI_1	RGCY	8 cut(s)	8, 58, 143, 173, 305, 314, 510, 622
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	2 cut(s)	44, 59
DpnI	GATC	6 cut(s)	33, 103, 182, 237, 537, 543
DpnII	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
DraI	TTTAAA	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco105I	TACGTA	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	2 cut(s)	404, 533
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	400, 529
FauNDI	CATATG	2 cut(s)	177, 582
Fnu4HI	GCNGC	2 cut(s)	9, 306
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	9, 306
FspBI	CTAG	2 cut(s)	87, 546
GluI	GCNGC	2 cut(s)	9, 306
HaeIII	GGCC	2 cut(s)	510, 622
Hin1II	CATG	2 cut(s)	404, 533
HinfI	GANTC	2 cut(s)	555, 638
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	4 cut(s)	19, 152, 187, 275
Hpy188III	TCNNGA	3 cut(s)	498, 539, 552
HpyAV	CCTTC	2 cut(s)	633, 686
HpyCH4III	ACNGT	2 cut(s)	565, 634
HpyCH4IV	ACGT	2 cut(s)	422, 697
HpyCH4V	TGCA	3 cut(s)	11, 29, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 311
HpyF3I	CTNAG	2 cut(s)	44, 59
HpySE526I	ACGT	2 cut(s)	422, 697
Hsp92II	CATG	2 cut(s)	404, 533
Kzo9I	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	104, 300, 465, 511
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	87, 546
MaeII	ACGT	2 cut(s)	422, 697
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	6 cut(s)	33, 103, 182, 237, 537, 543
MboI	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	2 cut(s)	31, 101
MluCI	AATT	5 cut(s)	82, 189, 257, 463, 595
MnlI	CCTC	6 cut(s)	54, 172, 222, 337, 372, 522
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	2 cut(s)	24, 467
Mva1269I	GAATGC	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	64, 311
NdeI	CATATG	2 cut(s)	177, 582
NdeII	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
NlaIII	CATG	2 cut(s)	404, 533
NlaIV	GGNNCC	1 cut(s)	103
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	555, 638
PkrI	GCNGC	2 cut(s)	10, 307
Ppu21I	YACGTR	1 cut(s)	698
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	152, 509
PsuI	RGATCY	2 cut(s)	31, 101
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	24, 467
SatI	GCNGC	2 cut(s)	9, 306
Sau3AI	GATC	6 cut(s)	31, 101, 180, 235, 535, 541
Sau96I	GGNCC	2 cut(s)	152, 509
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	152
SmiI	ATTTAAAT	1 cut(s)	468
SnaBI	TACGTA	1 cut(s)	698
Sse9I	AATT	5 cut(s)	82, 189, 257, 463, 595
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	87, 546
StyI	CCWWGG	1 cut(s)	545
SwaI	ATTTAAAT	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	565, 634
TaiI	ACGT	2 cut(s)	425, 700
TaqI	TCGA	1 cut(s)	551
TasI	AATT	5 cut(s)	82, 189, 257, 463, 595
TfiI	GAWTC	2 cut(s)	555, 638
Tru1I	TTAA	2 cut(s)	24, 467
Tru9I	TTAA	2 cut(s)	24, 467
TscAI	CASTG	2 cut(s)	52, 676
TseI	GCWGC	2 cut(s)	8, 305
TspDTI	ATGAA	4 cut(s)	518, 569, 630, 668
TspGWI	ACGGA	2 cut(s)	68, 94
TspRI	CASTG	2 cut(s)	52, 676
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	82
XmaJI	CCTAGG	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	87, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.