Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

60811912 .. 60816595

Gene Structure 4684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0476900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGAGAGAGGGAGGGACAGTTGACAGAGATGATGCTGATGAAGAGTGGTGGTGGCGCGGCCATGGCTGTCCCTTGCAGACCGCCCATGTGCTCCGCCATGGCTTCCAATATCAATTCAGAAAACCTACGTGCCCAACTGGGTCACCTCCATTCTGAGGCTGAGACCACCAGAGACAAAGCTAACAATGCAAGATTGAGGCTTCTGCGACTGTCAGAGGCAGCTGAGAAGCTTAGACGGCAAGCAGCAATCAATGTCCAGTCTGGGAGAGAAGACGATGCTAGGGAAATGCTCTATCAGAAGAAGAAGGTCATGCAGGCATTGGAGAAGTCAAAGAAACGCATCGAATTGCTTGATGAGCTTTCCGTGAAGCTTAATGAGGCAATTTCTGTAAAAGAGAGGCAGCTAATTGGAAATGTCGCTTTGGATCTTGAAGTTGTCAGACAAGATGTTTTCAGTCCAGTTCGAATTGTATCCCCAACACCTGAAGATGCACAAGATTTGGATGAGGTCGAAGAACTTGTCCCCAAGGGTTCGAAGCTTACTGATGACCAAGAAAACTTGTTCCTTACGGAGAATCAAGCAAGCTTACCTGTTGAGCCAGAAGGAGACGATGTTCGAAAGCCTTTAAAGACTGGAGTTTGGAATGAAGATGACATACTTAGTAGCTTGCAGGGAATAACCTCTTTTGAGAATTTCTTGGAGCATCTGGACAATAAACTTAACAAAATTGAAGCAGAACTTGTCACTGTATTAAGGATCTCAACCTTGGTAGTGGACAACCACGAGAAGGCAAAAAATTTCAAGGTGCAACAGATAATGGAACTTATTGAGAGTGTAGGTGGCATTAGACAGAGAATTTCAAGTATCAAGCTGGCAGATGTCGAGGTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030054 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

298

Amino Acids

33.49

Weight (kDa)

5.25

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AciI	CCGC	3 cut(s)	59, 83, 96
AclWI	GGATC	2 cut(s)	435, 767
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	3 cut(s)	694, 799, 858
AcuI	CTGAAG	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	157, 790
AgsI	TTSAA	4 cut(s)	434, 734, 805, 864
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	3 cut(s)	158, 168, 603
AlwI	GGATC	2 cut(s)	435, 767
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	221, 245, 403
ApoI	RAATTY	3 cut(s)	694, 799, 858
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	137
AsuII	TTCGAA	3 cut(s)	466, 536, 619
BaeGI	GKGCMC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BauI	CACGAG	1 cut(s)	785
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	233, 257, 415
BceAI	ACGGC	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	484
BcoDI	GTCTC	3 cut(s)	158, 168, 603
BfaI	CTAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	4 cut(s)	60, 222, 246, 404
BlsI	GCNGC	4 cut(s)	61, 223, 247, 405
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	5 cut(s)	24, 268, 351, 481, 715
BmuI	ACTGGG	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	657
Bpu14I	TTCGAA	3 cut(s)	466, 536, 619
BsaAI	YACGTR	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	63, 99, 528, 768
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 600, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 790
Bse1I	ACTGG	4 cut(s)	144, 259, 461, 640
BseDI	CCNNGG	4 cut(s)	63, 99, 528, 768
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	157, 790
BseMII	CTCAG	3 cut(s)	147, 153, 216
BseNI	ACTGG	4 cut(s)	144, 259, 461, 640
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	233, 257, 415
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	95
BslFI	GGGAC	3 cut(s)	30, 56, 509
BslI	CCNNNNNNNGG	2 cut(s)	157, 790
BsmAI	GTCTC	3 cut(s)	158, 168, 603
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	3 cut(s)	30, 56, 509
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	158
Bsp119I	TTCGAA	3 cut(s)	466, 536, 619
Bsp1286I	GDGCHC	2 cut(s)	95, 136
Bsp143I	GATC	2 cut(s)	427, 759
Bsp19I	CCATGG	2 cut(s)	63, 99
BspACI	CCGC	3 cut(s)	59, 83, 96
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	148, 154, 217
BspFNI	CGCG	1 cut(s)	59
BspPI	GGATC	2 cut(s)	435, 767
BspT104I	TTCGAA	3 cut(s)	466, 536, 619
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	4 cut(s)	144, 259, 461, 640
BssECI	CCNNGG	4 cut(s)	63, 99, 528, 768
BssMI	GATC	2 cut(s)	427, 759
BssSI	CACGAG	1 cut(s)	785
BssT1I	CCWWGG	4 cut(s)	63, 99, 528, 768
Bst2BI	CACGAG	1 cut(s)	785
Bst4CI	ACNGT	3 cut(s)	21, 213, 751
Bst6I	CTCTTC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	131
BstBI	TTCGAA	3 cut(s)	466, 536, 619
BstC8I	GCNNGC	5 cut(s)	243, 318, 586, 671, 876
BstDEI	CTNAG	5 cut(s)	156, 162, 225, 233, 662
BstDSI	CCRYGG	2 cut(s)	63, 99
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	430, 762
BstMAI	GTCTC	3 cut(s)	158, 168, 603
BstMBI	GATC	2 cut(s)	427, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 188, 238, 358
BstPI	GGTNACC	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	233, 257, 415
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	427, 759
BstYI	RGATCY	2 cut(s)	427, 759
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	2 cut(s)	63, 99
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	747
Cac8I	GCNNGC	5 cut(s)	243, 318, 586, 671, 876
CfoI	GCGC	1 cut(s)	59
CviAII	CATG	4 cut(s)	64, 88, 100, 313
DdeI	CTNAG	5 cut(s)	156, 162, 225, 233, 662
DpnI	GATC	2 cut(s)	429, 761
DpnII	GATC	2 cut(s)	427, 759
DraI	TTTAAA	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	4 cut(s)	63, 99, 528, 768
Eco31I	GGTCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
EcoT14I	CCWWGG	4 cut(s)	63, 99, 528, 768
ErhI	CCWWGG	4 cut(s)	63, 99, 528, 768
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	4 cut(s)	67, 91, 103, 316
FaiI	YATR	5 cut(s)	65, 89, 101, 314, 659
FalI	AAGNNNNNCTT	2 cut(s)	726, 758
FaqI	GGGAC	3 cut(s)	30, 56, 509
FatI	CATG	4 cut(s)	63, 87, 99, 312
Fnu4HI	GCNGC	4 cut(s)	60, 222, 246, 404
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	4 cut(s)	60, 222, 246, 404
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	4 cut(s)	60, 222, 246, 404
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	67, 91, 103, 316
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	4 cut(s)	230, 371, 539, 586
HinfI	GANTC	1 cut(s)	577
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	24, 778
Hpy188I	TCNGA	6 cut(s)	121, 157, 217, 300, 443, 893
Hpy188III	TCNNGA	2 cut(s)	431, 710
Hpy8I	GTNNAC	2 cut(s)	24, 778
HpyAV	CCTTC	3 cut(s)	301, 599, 784
HpyCH4III	ACNGT	3 cut(s)	21, 213, 751
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	78, 191, 316, 494, 673, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 188, 238, 358
HpyF3I	CTNAG	5 cut(s)	156, 162, 225, 233, 662
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	4 cut(s)	67, 91, 103, 316
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	427, 759
LmnI	GCTCC	2 cut(s)	98, 703
Lsp1109I	GCAGC	3 cut(s)	233, 257, 415
LweI	GCATC	5 cut(s)	24, 268, 351, 481, 715
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	2 cut(s)	143, 745
MalI	GATC	2 cut(s)	429, 761
MboI	GATC	2 cut(s)	427, 759
MboII	GAAGA	7 cut(s)	55, 284, 313, 316, 500, 527, 662
MflI	RGATCY	2 cut(s)	427, 759
MhlI	GDGCHC	2 cut(s)	95, 136
MluCI	AATT	9 cut(s)	115, 347, 384, 408, 468, 694, 729, 799, 858
MseI	TTAA	4 cut(s)	375, 629, 723, 755
MspA1I	CMGCKG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	4 cut(s)	65, 188, 238, 358
NcoI	CCATGG	2 cut(s)	63, 99
NdeII	GATC	2 cut(s)	427, 759
NlaIII	CATG	4 cut(s)	67, 91, 103, 316
NmuCI	GTSAC	2 cut(s)	143, 745
NspV	TTCGAA	3 cut(s)	466, 536, 619
PfeI	GAWTC	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	61, 223, 247, 405
Ppu21I	YACGTR	1 cut(s)	131
PspEI	GGTNACC	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	427, 759
PvuII	CAGCTG	1 cut(s)	224
SaqAI	TTAA	4 cut(s)	375, 629, 723, 755
SatI	GCNGC	4 cut(s)	60, 222, 246, 404
Sau3AI	GATC	2 cut(s)	427, 759
SduI	GDGCHC	2 cut(s)	95, 136
SfaNI	GCATC	5 cut(s)	24, 268, 351, 481, 715
SfuI	TTCGAA	3 cut(s)	466, 536, 619
Sse9I	AATT	9 cut(s)	115, 347, 384, 408, 468, 694, 729, 799, 858
SsiI	CCGC	3 cut(s)	59, 83, 96
SspMI	CTAG	1 cut(s)	282
StyI	CCWWGG	4 cut(s)	63, 99, 528, 768
TaaI	ACNGT	3 cut(s)	21, 213, 751
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	6 cut(s)	345, 466, 513, 536, 619, 885
TasI	AATT	9 cut(s)	115, 347, 384, 408, 468, 694, 729, 799, 858
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	4 cut(s)	375, 629, 723, 755
Tru9I	TTAA	4 cut(s)	375, 629, 723, 755
TscAI	CASTG	1 cut(s)	754
TseFI	GTSAC	2 cut(s)	143, 745
TseI	GCWGC	3 cut(s)	221, 245, 403
Tsp45I	GTSAC	2 cut(s)	143, 745
TspDTI	ATGAA	2 cut(s)	56, 663
TspGWI	ACGGA	2 cut(s)	355, 587
TspRI	CASTG	1 cut(s)	754
XapI	RAATTY	3 cut(s)	694, 799, 858
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.