Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Forward (+)

79568623 .. 79574433

Gene Structure 5811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG566000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGCTGGTGTTGCCTAGTTCAAAGCTCAGGAATCAACAGAGCTCTGTAGAAATGGAGGCCTTCTTGACCCATGTATGCAAGACAAGAACACTGCTTACATTGATCTTATGTATTTGGGTGCCCATGGAAGTGATGGCTCAGACTGGAAATGCCACCGTCTCGTCTAAGAGGCCGAGTTCTCTGAATATTGGAGCTCTGTTTACTTTCAATTCAGCCATTGGAAGGTCGGCCAAACCAGCAATCCTAGCCGCAATTGAAGAAGTTAATTCTGATTCAAGCGTTCTCGAGGGGACTAAATTGAACATTATTTTCCATGATACAAATTGCAGTGGATTTCTTGGAACTGTGGAAGCTTTGCAGCTCATTGAAAATGATGTGGTTGCTGCAATTGGCCCACAGTCCTCAGGAATAGCTCATGTCATATCCCACGTTGTTAATGAGCTCCATGTACCACTTCTGTCATTTGGAGCAACAGACCCCTCCCTTTCTGCTCTACAATACCCATATTTTGTACGCACCACGCAGAGTGACTATTTTCAAATGTATGCAGTTGCTGATATGGTTGAGTATTTCGGATGGAGAGAAGTAATTGCCATATTTGTAGATGATGATTGTGGCAGAAATGGGATTTCAGTACTAGGTGATGCCTTAGCAAAGAAGCGTTCCAAGATTGCTTACAAGGCTGCCTTCTCTCCTGGAGCCCCATTAAGCGATATCAATGACTTGTTGGTGGGAGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTAAATCCTGACTCTGGTTTGTCAATCTTTTCTGTTGCCAAGGATCTTGGAATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTACTAATTTAGATTCATTAGTACCACCTGACCCTGACAAAATGAATCTTTTACAAGGGGTTGTTGCTCTTCGTCATCATTCCCCGGATACTGATCTCAAAAAGAGTTTTGCATCTAAATGGAGCAAACTAAAGCATGAAGGGAGTTCGGGCTTCAATTCTTATGCTCTCTATGCATATGACTCTATTTGGTTAGCAGCCCGTGCCCTTGATGTTTTTCTCAATGAAGGAGGGACTGTATCTTTCTCTAGTGACCCAAAGTTGAAAGATACAAATAGAAGCGCACTGCACTTAGCATCACTCCGAATATTTGATGGAGGCCAACGTTACCTGCAGACACTTCTTAAGATGAACTTCACAGGTGTGAGTGGTCAGCTTCAGTTTGATCTGGATAAGAATTTAATTCATCCAGCTTATGATGTTCTGAACATTGGTGGAACTGGATTTCGTAAAATTGGTTATTGGTCAAATTCTTCTGGTCTGTCGACCACCGAGCCAGAGCCAGAGACATTATATGGGAAGTCGTTCAATACTTCTACCAGAACTCCACATCTTTATAGTGTTATATGGCCTGGCGAAACTATAGCTACACCTCGGGGATGGGTATTTCCTAACAATGGCAAGCCACTGCGTATTGCTGTGCCTGAGCGAGTAAGTTACAAAGATTTTGTGTCTAAAGACAAGAGTCCTCCTGGGGTCAGAGGATATTGTATTGATATATTTGAAGCTGCTATAAACTTGTTGCCTTATCCTGTGCCACGCACGTATATGTTGTATGGAGATGGCAAGAGGAATCCCCAGTACAACGATCTTGTTGGTCAAGTTGCTCTAAATAACTTTGATGCAGCTGTTGGGGATGTTACAATAACTACAAATAGGACAAGAATTGTTGATTTTACACAGCCTTACATGGAATCAGGACTAGTTGTAGTTGTTCCTGTCAAACAGGTAAAATCAAACCCTTGGGCTTTCCTGAAGCCATTTACTATTGAGATGTGGTTAGTCACCGGTGCATTCTTCCTTCTTGTGGGAGTCGTTGTTTGGATTCTTGAGCACAGGATTAATCACGAGTTCCGTGGTCCACCAAGGGAACAGCTCATGACTATTTTTTGGTTAGTATGTTCTACATCATTAAGGCCTCTGATTTGTTTGAGACTTTCTGATTCATATAGTCATAAGGTGTCTTTCTGGAAAGAAAAAGGCCCAAATTCCCTAATTGATGGACCTAGATGTTGCCTGGGTGTGGGGTGCCTATTAAATCACTTGGTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

712

Amino Acids

78.7

Weight (kDa)

6.97

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	63 - 359	3.2e-19	Periplasmic binding protein
ANF_receptor	PF01094	78 - 434	2.2e-89	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	519 - 602	1.5e-11	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	618 - 664	3.5e-08	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1203
AccB1I	GGYRCC	2 cut(s)	118, 2112
AccI	GTMKAC	1 cut(s)	1349
AciI	CCGC	1 cut(s)	249
AclI	AACGTT	1 cut(s)	1189
AclWI	GGATC	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	3 cut(s)	1261, 1333, 2071
AcuI	CTGAAG	2 cut(s)	1226, 1859
AdeI	CACNNNGTG	1 cut(s)	2131
AfaI	GTAC	6 cut(s)	450, 513, 636, 768, 888, 1667
AfiI	CCNNNNNNNGG	5 cut(s)	222, 785, 1481, 1891, 2107
AflII	CTTAAG	1 cut(s)	1208
AflIII	ACRYGT	1 cut(s)	769
AgeI	ACCGGT	1 cut(s)	1871
AhlI	ACTAGT	1 cut(s)	1786
AjnI	CCWGG	4 cut(s)	694, 1435, 1555, 2100
AleI	CACNNNNGTG	1 cut(s)	1226
Alw21I	GWGCWC	4 cut(s)	44, 196, 444, 1920
Alw26I	GTCTC	3 cut(s)	163, 1364, 2011
AlwI	GGATC	1 cut(s)	822
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	3 cut(s)	284, 753, 1458
AoxI	GGCC	8 cut(s)	57, 170, 228, 391, 1183, 1433, 2000, 2065
ApeKI	GCWGC	6 cut(s)	358, 383, 683, 1061, 1592, 1709
ApoI	RAATTY	3 cut(s)	1261, 1333, 2071
AseI	ATTAAT	1 cut(s)	1926
AsiGI	ACCGGT	1 cut(s)	1871
Asp700I	GAANNNNTTC	1 cut(s)	1388
AspLEI	GCGC	1 cut(s)	1148
AspS9I	GGNCC	4 cut(s)	392, 1943, 2066, 2087
AsuC2I	CCSGG	1 cut(s)	950
AsuHPI	GGTGA	2 cut(s)	653, 1861
AvaI	CYCGRG	3 cut(s)	284, 753, 1458
AvaII	GGWCC	2 cut(s)	1943, 2087
AxyI	CCTNAGG	1 cut(s)	403
BaeGI	GKGCMC	2 cut(s)	123, 1072
BanI	GGYRCC	2 cut(s)	118, 2112
BanII	GRGCYC	4 cut(s)	44, 196, 444, 703
BauI	CACGAG	1 cut(s)	1931
Bbv12I	GWGCWC	4 cut(s)	44, 196, 444, 1920
BbvI	GCAGC	6 cut(s)	370, 370, 670, 1073, 1579, 1721
BccI	CCATC	6 cut(s)	127, 570, 1172, 1458, 1640, 2078
BciT130I	CCWGG	4 cut(s)	696, 1437, 1557, 2102
BciVI	GTATCC	1 cut(s)	946
BcnI	CCSGG	1 cut(s)	950
BcoDI	GTCTC	3 cut(s)	163, 1364, 2011
BcuI	ACTAGT	1 cut(s)	1786
BfaI	CTAG	6 cut(s)	15, 245, 638, 1113, 1787, 2091
BfmI	CTRYAG	3 cut(s)	45, 1196, 1446
BfrI	CTTAAG	1 cut(s)	1208
BfuAI	ACCTGC	1 cut(s)	1203
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	7 cut(s)	249, 359, 384, 684, 1062, 1593, 1710
BlsI	GCNGC	7 cut(s)	250, 360, 385, 685, 1063, 1594, 1711
BmcAI	AGTACT	1 cut(s)	636
Bme1390I	CCNGG	5 cut(s)	696, 950, 1437, 1557, 2102
Bme18I	GGWCC	2 cut(s)	1943, 2087
BmeT110I	CYCGRG	3 cut(s)	284, 753, 1458
BmgT120I	GGNCC	4 cut(s)	392, 1943, 2066, 2087
BmiI	GGNNCC	3 cut(s)	120, 700, 2114
BmrFI	CCNGG	5 cut(s)	696, 950, 1437, 1557, 2102
BmrI	ACTGGG	1 cut(s)	1657
BmsI	GCATC	4 cut(s)	634, 986, 1169, 1696
BmuI	ACTGGG	1 cut(s)	1657
BoxI	GACNNNNGTC	1 cut(s)	1548
BplI	GAGNNNNNCTC	2 cut(s)	726, 758
BpmI	CTGGAG	1 cut(s)	717
Bpu10I	CCTNAGC	3 cut(s)	26, 649, 1509
BpuEI	CTTGAG	1 cut(s)	1934
BpuMI	CCSGG	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	1629
BsaBI	GATNNNNATC	1 cut(s)	957
BsaJI	CCNNGG	9 cut(s)	123, 810, 948, 1457, 1556, 1826, 1939, 1949, 2101
BsaWI	WCCGGW	1 cut(s)	1871
BsaXI	ACNNNNNCTCC	6 cut(s)	1086, 1116, 1393, 1423, 1887, 1917
Bsc4I	CCNNNNNNNGG	5 cut(s)	222, 785, 1481, 1891, 2107
Bse118I	RCCGGY	1 cut(s)	1871
Bse1I	ACTGG	4 cut(s)	148, 831, 1309, 1663
Bse21I	CCTNAGG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	957
BseBI	CCWGG	4 cut(s)	696, 1437, 1557, 2102
BseDI	CCNNGG	9 cut(s)	123, 810, 948, 1457, 1556, 1826, 1939, 1949, 2101
BseGI	GGATG	4 cut(s)	581, 1270, 1469, 1726
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	5 cut(s)	222, 785, 1481, 1891, 2107
BseMII	CTCAG	4 cut(s)	40, 152, 417, 1500
BseNI	ACTGG	4 cut(s)	148, 831, 1309, 1663
BseSI	GKGCMC	2 cut(s)	123, 1072
BseXI	GCAGC	6 cut(s)	370, 370, 670, 1073, 1579, 1721
BsgI	GTGCAG	1 cut(s)	1136
BshFI	GGCC	8 cut(s)	59, 172, 230, 393, 1185, 1435, 2002, 2067
BshNI	GGYRCC	2 cut(s)	118, 2112
BshTI	ACCGGT	1 cut(s)	1871
BsiHKAI	GWGCWC	4 cut(s)	44, 196, 444, 1920
BsiHKCI	CYCGRG	3 cut(s)	284, 753, 1458
BsiSI	CCGG	2 cut(s)	950, 1872
BslFI	GGGAC	2 cut(s)	304, 1111
BslI	CCNNNNNNNGG	5 cut(s)	222, 785, 1481, 1891, 2107
BsmAI	GTCTC	3 cut(s)	163, 1364, 2011
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	304, 1111
BsmI	GAATGC	1 cut(s)	1877
BsnI	GGCC	8 cut(s)	59, 172, 230, 393, 1185, 1435, 2002, 2067
BsoBI	CYCGRG	3 cut(s)	284, 753, 1458
Bsp1286I	GDGCHC	7 cut(s)	44, 123, 196, 444, 703, 1072, 1920
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	5 cut(s)	102, 814, 958, 1249, 1672
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	8 cut(s)	59, 172, 230, 393, 1185, 1435, 2002, 2067
BspCNI	CTCAG	4 cut(s)	39, 151, 416, 1501
BspHI	TCATGA	1 cut(s)	1962
BspLI	GGNNCC	3 cut(s)	120, 700, 2114
BspMAI	CTGCAG	1 cut(s)	1200
BspMI	ACCTGC	1 cut(s)	1203
BspPI	GGATC	1 cut(s)	822
BspQI	GCTCTTC	1 cut(s)	939
BspT107I	GGYRCC	2 cut(s)	118, 2112
BspTI	CTTAAG	1 cut(s)	1208
BsrFI	RCCGGY	1 cut(s)	1871
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	4 cut(s)	148, 831, 1309, 1663
BssAI	RCCGGY	1 cut(s)	1871
BssECI	CCNNGG	9 cut(s)	123, 810, 948, 1457, 1556, 1826, 1939, 1949, 2101
BssMI	GATC	5 cut(s)	102, 814, 958, 1249, 1672
BssSI	CACGAG	1 cut(s)	1931
BssT1I	CCWWGG	4 cut(s)	123, 810, 1826, 1949
Bst2BI	CACGAG	1 cut(s)	1931
Bst2UI	CCWGG	4 cut(s)	696, 1437, 1557, 2102
Bst4CI	ACNGT	4 cut(s)	157, 346, 399, 1102
Bst6I	CTCTTC	1 cut(s)	939
BstAFI	CTTAAG	1 cut(s)	1208
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstAUI	TGTACA	1 cut(s)	766
BstBAI	YACGTR	1 cut(s)	1629
BstC8I	GCNNGC	1 cut(s)	1487
BstDEI	CTNAG	7 cut(s)	26, 138, 165, 403, 649, 1156, 1509
BstDSI	CCRYGG	2 cut(s)	123, 1939
BstF5I	GGATG	4 cut(s)	581, 1270, 1469, 1726
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	5 cut(s)	105, 817, 961, 1252, 1675
BstMAI	GTCTC	3 cut(s)	163, 1364, 2011
BstMBI	GATC	5 cut(s)	102, 814, 958, 1249, 1672
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 236, 245, 680, 1037, 1067
BstNI	CCWGG	4 cut(s)	696, 1437, 1557, 2102
BstNSI	RCATGY	1 cut(s)	773
BstPAI	GACNNNNGTC	1 cut(s)	1548
BstSCI	CCNGG	5 cut(s)	694, 948, 1435, 1555, 2100
BstSFI	CTRYAG	3 cut(s)	45, 1196, 1446
BstSLI	GKGCMC	2 cut(s)	123, 1072
BstV1I	GCAGC	6 cut(s)	370, 370, 670, 1073, 1579, 1721
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
Bsu36I	CCTNAGG	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	946
BsuRI	GGCC	8 cut(s)	59, 172, 230, 393, 1185, 1435, 2002, 2067
BtgI	CCRYGG	2 cut(s)	123, 1939
BtsCI	GGATG	4 cut(s)	581, 1270, 1469, 1726
BtsI	GCAGTG	4 cut(s)	89, 334, 1148, 1490
BtsIMutI	CAGTG	5 cut(s)	89, 334, 838, 1148, 1490
BveI	ACCTGC	1 cut(s)	1203
Cac8I	GCNNGC	1 cut(s)	1487
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	1962
CfoI	GCGC	1 cut(s)	1148
Cfr10I	RCCGGY	1 cut(s)	1871
Cfr13I	GGNCC	4 cut(s)	392, 1943, 2066, 2087
Csp6I	GTAC	6 cut(s)	449, 512, 635, 767, 887, 1666
CspAI	ACCGGT	1 cut(s)	1871
CviQI	GTAC	6 cut(s)	449, 512, 635, 767, 887, 1666
DdeI	CTNAG	7 cut(s)	26, 138, 165, 403, 649, 1156, 1509
DpnI	GATC	5 cut(s)	104, 816, 960, 1251, 1674
DpnII	GATC	5 cut(s)	102, 814, 958, 1249, 1672
DraIII	CACNNNGTG	1 cut(s)	2131
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Ecl136II	GAGCTC	3 cut(s)	42, 194, 442
Eco130I	CCWWGG	4 cut(s)	123, 810, 1826, 1949
Eco147I	AGGCCT	2 cut(s)	59, 2002
Eco24I	GRGCYC	4 cut(s)	44, 196, 444, 703
Eco32I	GATATC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	1943, 2087
Eco53kI	GAGCTC	3 cut(s)	42, 194, 442
Eco57I	CTGAAG	2 cut(s)	1226, 1859
Eco81I	CCTNAGG	1 cut(s)	403
Eco88I	CYCGRG	3 cut(s)	284, 753, 1458
EcoICRI	GAGCTC	3 cut(s)	42, 194, 442
EcoRII	CCWGG	4 cut(s)	694, 1435, 1555, 2100
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	4 cut(s)	123, 810, 1826, 1949
EcoT22I	ATGCAT	1 cut(s)	1042
EcoT38I	GRGCYC	4 cut(s)	44, 196, 444, 703
ErhI	CCWWGG	4 cut(s)	123, 810, 1826, 1949
Esp3I	CGTCTC	1 cut(s)	163
FalI	AAGNNNNNCTT	4 cut(s)	671, 703, 1202, 1234
FaqI	GGGAC	2 cut(s)	304, 1111
FauNDI	CATATG	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	1349
Fnu4HI	GCNGC	7 cut(s)	249, 359, 384, 684, 1062, 1593, 1710
FokI	GGATG	4 cut(s)	588, 1257, 1476, 1733
FriOI	GRGCYC	4 cut(s)	44, 196, 444, 703
Fsp4HI	GCNGC	7 cut(s)	249, 359, 384, 684, 1062, 1593, 1710
FspBI	CTAG	6 cut(s)	15, 245, 638, 1113, 1787, 2091
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	7 cut(s)	249, 359, 384, 684, 1062, 1593, 1710
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	8 cut(s)	59, 172, 230, 393, 1185, 1435, 2002, 2067
HapII	CCGG	2 cut(s)	950, 1872
HhaI	GCGC	1 cut(s)	1148
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HincII	GTYRAC	1 cut(s)	1350
HindII	GTYRAC	1 cut(s)	1350
HindIII	AAGCTT	1 cut(s)	351
HpaII	CCGG	2 cut(s)	950, 1872
HphI	GGTGA	2 cut(s)	653, 1861
Hpy166II	GTNNAC	4 cut(s)	201, 739, 1350, 1946
Hpy188I	TCNGA	9 cut(s)	141, 183, 271, 575, 1169, 1290, 1565, 2007, 2026
Hpy8I	GTNNAC	4 cut(s)	201, 739, 1350, 1946
HpyAV	CCTTC	6 cut(s)	70, 216, 697, 998, 1085, 1895
HpyCH4III	ACNGT	4 cut(s)	157, 346, 399, 1102
HpyCH4IV	ACGT	3 cut(s)	429, 1189, 1628
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 236, 245, 680, 1037, 1067
HpyF3I	CTNAG	7 cut(s)	26, 138, 165, 403, 649, 1156, 1509
HpySE526I	ACGT	3 cut(s)	429, 1189, 1628
HspAI	GCGC	1 cut(s)	1146
Kzo9I	GATC	5 cut(s)	102, 814, 958, 1249, 1672
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	5 cut(s)	191, 447, 467, 698, 987
Lsp1109I	GCAGC	6 cut(s)	370, 370, 670, 1073, 1579, 1721
LweI	GCATC	4 cut(s)	634, 986, 1169, 1696
MaeI	CTAG	6 cut(s)	15, 245, 638, 1113, 1787, 2091
MaeII	ACGT	3 cut(s)	429, 1189, 1628
MaeIII	GTNAC	6 cut(s)	527, 1115, 1190, 1520, 1723, 1867
MalI	GATC	5 cut(s)	104, 816, 960, 1251, 1674
MboI	GATC	5 cut(s)	102, 814, 958, 1249, 1672
MboII	GAAGA	4 cut(s)	269, 926, 1329, 1873
MfeI	CAATTG	2 cut(s)	252, 387
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	7 cut(s)	44, 123, 196, 444, 703, 1072, 1920
MlyI	GAGTC	4 cut(s)	776, 1040, 1558, 1905
Mph1103I	ATGCAT	1 cut(s)	1042
MroXI	GAANNNNTTC	1 cut(s)	1388
MseI	TTAA	8 cut(s)	264, 435, 707, 1209, 1265, 1926, 1997, 2120
MslI	CAYNNNNRTG	4 cut(s)	128, 982, 1226, 1631
MspA1I	CMGCKG	1 cut(s)	1712
MspCI	CTTAAG	1 cut(s)	1208
MspI	CCGG	2 cut(s)	950, 1872
MspR9I	CCNGG	5 cut(s)	696, 950, 1437, 1557, 2102
MunI	CAATTG	2 cut(s)	252, 387
Mva1269I	GAATGC	1 cut(s)	1877
MvaI	CCWGG	4 cut(s)	696, 1437, 1557, 2102
MwoI	GCNNNNNNNGC	6 cut(s)	10, 236, 245, 680, 1037, 1067
NciI	CCSGG	1 cut(s)	950
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	5 cut(s)	102, 814, 958, 1249, 1672
NlaIV	GGNNCC	3 cut(s)	120, 700, 2114
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	3 cut(s)	527, 1115, 1867
NsiI	ATGCAT	1 cut(s)	1042
NspI	RCATGY	1 cut(s)	773
OliI	CACNNNNGTG	1 cut(s)	1226
PaeR7I	CTCGAG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	1962
PceI	AGGCCT	2 cut(s)	59, 2002
PciI	ACATGT	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	939
PctI	GAATGC	1 cut(s)	1877
PdmI	GAANNNNTTC	1 cut(s)	1388
PfeI	GAWTC	9 cut(s)	31, 272, 749, 878, 910, 1657, 1778, 1909, 2027
PfoI	TCCNGGA	1 cut(s)	694
PinAI	ACCGGT	1 cut(s)	1871
PkrI	GCNGC	7 cut(s)	250, 360, 385, 685, 1063, 1594, 1711
PleI	GAGTC	4 cut(s)	776, 1040, 1557, 1904
PpsI	GAGTC	4 cut(s)	776, 1040, 1557, 1904
Ppu21I	YACGTR	1 cut(s)	1629
PscI	ACATGT	1 cut(s)	769
PshAI	GACNNNNGTC	1 cut(s)	1548
PshBI	ATTAAT	1 cut(s)	1926
Psp124BI	GAGCTC	3 cut(s)	44, 196, 444
Psp1406I	AACGTT	1 cut(s)	1189
Psp6I	CCWGG	4 cut(s)	694, 1435, 1555, 2100
PspGI	CCWGG	4 cut(s)	694, 1435, 1555, 2100
PspN4I	GGNNCC	3 cut(s)	120, 700, 2114
PspPI	GGNCC	4 cut(s)	392, 1943, 2066, 2087
PsrI	GAACNNNNNNTAC	2 cut(s)	79, 111
PstI	CTGCAG	1 cut(s)	1200
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	814
PvuII	CAGCTG	1 cut(s)	1712
RsaI	GTAC	6 cut(s)	450, 513, 636, 768, 888, 1667
RsaNI	GTAC	6 cut(s)	449, 512, 635, 767, 887, 1666
RseI	CAYNNNNRTG	4 cut(s)	128, 982, 1226, 1631
SacI	GAGCTC	3 cut(s)	44, 196, 444
SalI	GTCGAC	1 cut(s)	1348
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	8 cut(s)	264, 435, 707, 1209, 1265, 1926, 1997, 2120
SatI	GCNGC	7 cut(s)	249, 359, 384, 684, 1062, 1593, 1710
Sau3AI	GATC	5 cut(s)	102, 814, 958, 1249, 1672
Sau96I	GGNCC	4 cut(s)	392, 1943, 2066, 2087
ScaI	AGTACT	1 cut(s)	636
SchI	GAGTC	4 cut(s)	776, 1040, 1558, 1905
ScrFI	CCNGG	5 cut(s)	696, 950, 1437, 1557, 2102
SduI	GDGCHC	7 cut(s)	44, 123, 196, 444, 703, 1072, 1920
SfaNI	GCATC	4 cut(s)	634, 986, 1169, 1696
SfcI	CTRYAG	3 cut(s)	45, 1196, 1446
Sfr274I	CTCGAG	1 cut(s)	284
SgrAI	CRCCGGYG	1 cut(s)	1871
SinI	GGWCC	2 cut(s)	1943, 2087
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	4 cut(s)	128, 982, 1226, 1631
SmlI	CTYRAG	3 cut(s)	284, 1208, 1913
SmoI	CTYRAG	3 cut(s)	284, 1208, 1913
SpeI	ACTAGT	1 cut(s)	1786
SseBI	AGGCCT	2 cut(s)	59, 2002
SsiI	CCGC	1 cut(s)	249
SspI	AATATT	2 cut(s)	187, 1173
SspMI	CTAG	6 cut(s)	15, 245, 638, 1113, 1787, 2091
SstI	GAGCTC	3 cut(s)	44, 196, 444
StuI	AGGCCT	2 cut(s)	59, 2002
StyD4I	CCNGG	5 cut(s)	694, 948, 1435, 1555, 2100
StyI	CCWWGG	4 cut(s)	123, 810, 1826, 1949
TaaI	ACNGT	4 cut(s)	157, 346, 399, 1102
TaiI	ACGT	3 cut(s)	432, 1192, 1631
TaqI	TCGA	2 cut(s)	285, 1349
TatI	WGTACW	3 cut(s)	634, 766, 1665
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	9 cut(s)	31, 272, 749, 878, 910, 1657, 1778, 1909, 2027
Tru1I	TTAA	8 cut(s)	264, 435, 707, 1209, 1265, 1926, 1997, 2120
Tru9I	TTAA	8 cut(s)	264, 435, 707, 1209, 1265, 1926, 1997, 2120
TscAI	CASTG	5 cut(s)	96, 334, 838, 1155, 1497
TseFI	GTSAC	3 cut(s)	527, 1115, 1867
TseI	GCWGC	6 cut(s)	358, 383, 683, 1061, 1592, 1709
Tsp45I	GTSAC	3 cut(s)	527, 1115, 1867
TspDTI	ATGAA	7 cut(s)	870, 923, 1017, 1104, 1229, 1259, 2019
TspGWI	ACGGA	1 cut(s)	1928
TspRI	CASTG	5 cut(s)	96, 334, 838, 1155, 1497
Vha464I	CTTAAG	1 cut(s)	1208
VpaK11BI	GGWCC	2 cut(s)	1943, 2087
VspI	ATTAAT	1 cut(s)	1926
XapI	RAATTY	3 cut(s)	1261, 1333, 2071
XceI	RCATGY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	1349
XmnI	GAANNNNTTC	1 cut(s)	1388
XspI	CTAG	6 cut(s)	15, 245, 638, 1113, 1787, 2091
ZrmI	AGTACT	1 cut(s)	636
Zsp2I	ATGCAT	1 cut(s)	1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.