Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004966.1

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

83483 .. 83827

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004966.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcaactcaatgaaatggatgcagatcgactatccctgacgagcttttggggcctgttccttatatgcggtattgcatgcttcattactcttgctgtgttcttctgtagaatcttattgcaataccgcagatttagtccagagactgtggaaggggatgttgaggaaattgaacttcctcccagatctggtcgccgctcactccggacagctagtttcaaaaacttgatggattttgtagataagaaagaaatagagatcaagcatatgctaaagagaaagagcagcgataacaaacaagaagctagtccaagctctgatggcaagtcccattcaccctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

114

Amino Acids

13.07

Weight (kDa)

7.73

Isoelectric Point (pI)

72.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	3 cut(s)	69, 127, 196
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	173, 220
AluBI	AGCT	4 cut(s)	45, 212, 305, 315
AluI	AGCT	4 cut(s)	45, 212, 305, 315
Alw26I	GTCTC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	204
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	223, 314
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	213, 306
BfmI	CTRYAG	1 cut(s)	106
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	2 cut(s)	196, 286
BlsI	GCNGC	2 cut(s)	197, 287
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	204
BseGI	GGATG	2 cut(s)	25, 163
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	54
Bsp13I	TCCGGA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	25, 185, 258
BspACI	CCGC	3 cut(s)	69, 127, 196
BspANI	GGCC	1 cut(s)	54
BspEI	TCCGGA	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	198
BssMI	GATC	3 cut(s)	25, 185, 258
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	25, 163
BstKTI	GATC	3 cut(s)	28, 188, 261
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	25, 185, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 321
BstNSI	RCATGY	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	25, 163
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	5 cut(s)	45, 54, 212, 305, 315
CviKI_1	RGCY	5 cut(s)	45, 54, 212, 305, 315
DpnI	GATC	3 cut(s)	27, 187, 260
DpnII	GATC	3 cut(s)	25, 185, 258
EcoO109I	RGGNCCY	1 cut(s)	52
FaeI	CATG	1 cut(s)	81
FaiI	YATR	5 cut(s)	65, 67, 79, 267, 269
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	196, 286
FokI	GGATG	2 cut(s)	32, 170
Fsp4HI	GCNGC	2 cut(s)	196, 286
FspBI	CTAG	2 cut(s)	213, 306
GluI	GCNGC	2 cut(s)	196, 286
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	81
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	140, 205
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	4, 23, 77, 121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 321
Hsp92II	CATG	1 cut(s)	81
Kpn2I	TCCGGA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	25, 185, 258
LpnPI	CCDG	6 cut(s)	50, 68, 153, 174, 196, 218
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	213, 306
MalI	GATC	3 cut(s)	27, 187, 260
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	3 cut(s)	25, 185, 258
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	2 cut(s)	157, 189
MroI	TCCGGA	1 cut(s)	204
MseI	TTAA	1 cut(s)	343
MspI	CCGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	51, 321
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	3 cut(s)	25, 185, 258
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	81
PaeI	GCATGC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	197, 287
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	2 cut(s)	196, 286
Sau3AI	GATC	3 cut(s)	25, 185, 258
Sau96I	GGNCC	1 cut(s)	52
SetI	ASST	4 cut(s)	47, 214, 307, 317
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	106
SphI	GCATGC	1 cut(s)	81
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	3 cut(s)	69, 127, 196
SspMI	CTAG	2 cut(s)	213, 306
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	27, 73
XceI	RCATGY	1 cut(s)	81
XspI	CTAG	2 cut(s)	213, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.