Rorug02G0477200

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
60867235 .. 60868563
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0477200.1

Sequence Viewer

Length: 804 bp
ATGGCTTCCTCAACAATGGCTCTCTCCTCCCCTTCTCTAGCTGGCCAAGCTGTGAAGCTCGGTTCCTCTACATCTAACCTCCTCGGTGAGGGCCGAGTTACCATGCGCAAAACCGCAGCCAAGTCCAAAAATGTTTCATCCGGCAGCCCATGGTACGGCCCTGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAAGCCCCGTCTTACCTCACTGGAGAGTTTCCCGGTGACTATGGTTGGGACACAGCTGGGCTCTCAGCTGATCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAGGTCATCCATTCCAGATGGGCCATGCTAGGCGCCCTAGGCTGTGTTTTCCCCGAACTCTTGGCTCGTAATGGGGTCAAATTCGGCGAAGCTGTTTGGTTCAAGGCTGGAGCTCAAATCTTCAGTGAGGGTGGATTAGACTACTTGGGAAACCCGAGCTTGGTCCATGCCCAAAGCATTCTGGCAATTTGGGCAACACAGGTTATTTTGATGGGTGCGGTAGAAGGCTACAGAATTGCCGGTGGGCCGCTCGGTGAGGTTGTAGACCCTTTGTACCCCGGCGGGAGCTTTGACCCATTAGGGCTTGCAGACGATCCCGAGGCTTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGACTGGCCATGTTCTCGATGTTCGGGTTTTTTGTGCAAGCTATTGTTACAGGAAAGGGACCGATTGAGAACCTAGCTGACCACTTGGCTGACCCTGTTAACAACAATGCTTGGTCATATGCCACAAACTTTGTACCCGGGAAGTGA

Protein Analysis

267

Amino Acids

28.29

Weight (kDa)

5.29

Isoelectric Point (pI)

22.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 67 - 234 1.5e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 561
AciI CCGC 4 cut(s) 114, 515, 545, 579
AclWI GGATC 2 cut(s) 260, 605
AcoI YGGCCR 2 cut(s) 43, 663
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 4 cut(s) 155, 176, 572, 792
AfiI CCNNNNNNNGG 4 cut(s) 88, 155, 191, 457
AgsI TTSAA 1 cut(s) 400
Alw21I GWGCWC 4 cut(s) 297, 412, 633, 648
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 2 cut(s) 260, 605
Ama87I CYCGRG 5 cut(s) 269, 296, 451, 614, 794
AoxI GGCC 7 cut(s) 43, 91, 157, 181, 318, 542, 663
ApaI GGGCCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 116, 144
ApoI RAATTY 1 cut(s) 377
AspA2I CCTAGG 1 cut(s) 334
AspLEI GCGC 2 cut(s) 108, 332
AspS9I GGNCC 8 cut(s) 91, 158, 181, 182, 318, 460, 542, 716
AsuC2I CCSGG 4 cut(s) 228, 576, 795, 796
AsuHPI GGTGA 4 cut(s) 98, 242, 563, 649
AvaI CYCGRG 5 cut(s) 269, 296, 451, 614, 794
AvaII GGWCC 2 cut(s) 460, 716
AvrII CCTAGG 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 185
BalI TGGCCA 2 cut(s) 45, 665
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 6 cut(s) 185, 258, 297, 412, 633, 648
BbsI GAAGAC 1 cut(s) 664
Bbv12I GWGCWC 4 cut(s) 297, 412, 633, 648
BbvI GCAGC 2 cut(s) 128, 156
BccI CCATC 2 cut(s) 309, 502
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 4 cut(s) 260, 294, 605, 639
BcnI CCSGG 4 cut(s) 228, 576, 795, 796
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 4 cut(s) 38, 326, 335, 731
BfmI CTRYAG 1 cut(s) 526
BfoI RGCGCY 1 cut(s) 333
BisI GCNGC 3 cut(s) 117, 145, 545
BlnI CCTAGG 1 cut(s) 334
BlpI GCTNAGC 1 cut(s) 627
BlsI GCNGC 3 cut(s) 118, 146, 546
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 4 cut(s) 228, 576, 795, 796
Bme18I GGWCC 2 cut(s) 460, 716
BmeT110I CYCGRG 5 cut(s) 269, 296, 451, 614, 794
BmgT120I GGNCC 8 cut(s) 91, 158, 181, 182, 318, 460, 542, 716
BmiI GGNNCC 4 cut(s) 64, 183, 331, 717
BmrFI CCNGG 4 cut(s) 228, 576, 795, 796
BpiI GAAGAC 1 cut(s) 664
BpmI CTGGAG 2 cut(s) 237, 426
Bpu1102I GCTNAGC 1 cut(s) 627
BpuEI CTTGAG 2 cut(s) 617, 632
BpuMI CCSGG 4 cut(s) 228, 576, 795, 796
BsaHI GRCGYC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 6 cut(s) 82, 149, 334, 574, 615, 794
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 155, 191, 457
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 220, 666
BseDI CCNNGG 6 cut(s) 82, 149, 334, 574, 615, 794
BseGI GGATG 2 cut(s) 137, 303
BseLI CCNNNNNNNGG 4 cut(s) 88, 155, 191, 457
BseMII CTCAG 2 cut(s) 273, 618
BseNI ACTGG 2 cut(s) 220, 666
BseRI GAGGAG 2 cut(s) 16, 71
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 2 cut(s) 128, 156
BseYI CCCAGC 1 cut(s) 251
BshFI GGCC 7 cut(s) 45, 93, 159, 183, 320, 544, 665
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 4 cut(s) 297, 412, 633, 648
BsiHKCI CYCGRG 5 cut(s) 269, 296, 451, 614, 794
BsiSI CCGG 6 cut(s) 141, 192, 228, 537, 576, 795
BslFI GGGAC 2 cut(s) 257, 729
BslI CCNNNNNNNGG 4 cut(s) 88, 155, 191, 457
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 2 cut(s) 257, 729
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 7 cut(s) 45, 93, 159, 183, 320, 544, 665
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 5 cut(s) 269, 296, 451, 614, 794
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 6 cut(s) 185, 258, 297, 412, 633, 648
Bsp143I GATC 2 cut(s) 265, 610
Bsp1720I GCTNAGC 1 cut(s) 627
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 4 cut(s) 114, 515, 545, 579
BspANI GGCC 7 cut(s) 45, 93, 159, 183, 320, 544, 665
BspCNI CTCAG 2 cut(s) 272, 619
BspLI GGNNCC 4 cut(s) 64, 183, 331, 717
BspPI GGATC 2 cut(s) 260, 605
BspT107I GGYRCC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 547
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 2 cut(s) 220, 666
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 6 cut(s) 82, 149, 334, 574, 615, 794
BssMI GATC 2 cut(s) 265, 610
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 2 cut(s) 149, 334
Bst4CI ACNGT 2 cut(s) 167, 290
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 43, 603, 696
BstDEI CTNAG 2 cut(s) 259, 627
BstDSI CCRYGG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 137, 303
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 108, 332
BstKTI GATC 2 cut(s) 268, 613
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 265, 610
BstMWI GCNNNNNNNGC 3 cut(s) 47, 336, 488
BstSCI CCNGG 4 cut(s) 226, 574, 793, 794
BstSFI CTRYAG 1 cut(s) 526
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 128, 156
BstV2I GAAGAC 1 cut(s) 664
BsuRI GGCC 7 cut(s) 45, 93, 159, 183, 320, 544, 665
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 137, 303
BtsIMutI CAGTG 2 cut(s) 213, 427
Cac8I GCNNGC 3 cut(s) 43, 603, 696
CfoI GCGC 2 cut(s) 108, 332
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 8 cut(s) 91, 158, 181, 182, 318, 460, 542, 716
Cfr9I CCCGGG 1 cut(s) 794
Csp6I GTAC 4 cut(s) 154, 175, 571, 791
CspCI CAANNNNNGTGG 2 cut(s) 769, 804
CviAII CATG 5 cut(s) 103, 150, 322, 464, 667
CviQI GTAC 4 cut(s) 154, 175, 571, 791
DdeI CTNAG 2 cut(s) 259, 627
DinI GGCGCC 1 cut(s) 331
DpnI GATC 2 cut(s) 267, 612
DpnII GATC 2 cut(s) 265, 610
EaeI YGGCCR 2 cut(s) 43, 663
Ecl136II GAGCTC 4 cut(s) 295, 410, 631, 646
Eco130I CCWWGG 2 cut(s) 149, 334
Eco24I GRGCYC 6 cut(s) 185, 258, 297, 412, 633, 648
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 460, 716
Eco53kI GAGCTC 4 cut(s) 295, 410, 631, 646
Eco57I CTGAAG 1 cut(s) 403
Eco88I CYCGRG 5 cut(s) 269, 296, 451, 614, 794
EcoICRI GAGCTC 4 cut(s) 295, 410, 631, 646
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 149, 334
EcoT38I GRGCYC 6 cut(s) 185, 258, 297, 412, 633, 648
EgeI GGCGCC 1 cut(s) 331
EheI GGCGCC 1 cut(s) 331
ErhI CCWWGG 2 cut(s) 149, 334
FaeI CATG 5 cut(s) 106, 153, 325, 467, 670
FaiI YATR 8 cut(s) 104, 151, 237, 323, 465, 668, 775, 777
FaqI GGGAC 2 cut(s) 257, 729
FatI CATG 5 cut(s) 102, 149, 321, 463, 666
FauI CCCGC 1 cut(s) 572
FauNDI CATATG 1 cut(s) 775
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 3 cut(s) 117, 145, 545
FokI GGATG 2 cut(s) 124, 290
FriOI GRGCYC 6 cut(s) 185, 258, 297, 412, 633, 648
Fsp4HI GCNGC 3 cut(s) 117, 145, 545
FspBI CTAG 4 cut(s) 38, 326, 335, 731
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 2 cut(s) 107, 331
GluI GCNGC 3 cut(s) 117, 145, 545
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 2 cut(s) 237, 426
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 7 cut(s) 45, 93, 159, 183, 320, 544, 665
HapII CCGG 6 cut(s) 141, 192, 228, 537, 576, 795
HhaI GCGC 2 cut(s) 108, 332
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 5 cut(s) 106, 153, 325, 467, 670
Hin6I GCGC 2 cut(s) 106, 330
HinP1I GCGC 2 cut(s) 106, 330
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 6 cut(s) 141, 192, 228, 537, 576, 795
HphI GGTGA 4 cut(s) 98, 242, 563, 649
Hpy166II GTNNAC 2 cut(s) 562, 757
Hpy188III TCNNGA 5 cut(s) 269, 312, 614, 649, 673
Hpy8I GTNNAC 2 cut(s) 562, 757
HpyAV CCTTC 3 cut(s) 42, 515, 634
HpyCH4III ACNGT 2 cut(s) 167, 290
HpyCH4V TGCA 2 cut(s) 605, 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 336, 488
HpyF3I CTNAG 2 cut(s) 259, 627
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 5 cut(s) 106, 153, 325, 467, 670
HspAI GCGC 2 cut(s) 106, 330
KasI GGCGCC 1 cut(s) 329
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 2 cut(s) 265, 610
LmnI GCTCC 3 cut(s) 407, 582, 643
Lsp1109I GCAGC 2 cut(s) 128, 156
MaeI CTAG 4 cut(s) 38, 326, 335, 731
MaeIII GTNAC 3 cut(s) 97, 230, 703
MalI GATC 2 cut(s) 267, 612
MbiI CCGCTC 1 cut(s) 547
MboI GATC 2 cut(s) 265, 610
MboII GAAGA 2 cut(s) 409, 669
MhlI GDGCHC 6 cut(s) 185, 258, 297, 412, 633, 648
MlsI TGGCCA 2 cut(s) 45, 665
MluCI AATT 3 cut(s) 377, 483, 531
MluNI TGGCCA 2 cut(s) 45, 665
Mly113I GGCGCC 1 cut(s) 330
Mox20I TGGCCA 2 cut(s) 45, 665
MscI TGGCCA 2 cut(s) 45, 665
MseI TTAA 1 cut(s) 756
Msp20I TGGCCA 2 cut(s) 45, 665
MspA1I CMGCKG 2 cut(s) 251, 263
MspI CCGG 6 cut(s) 141, 192, 228, 537, 576, 795
MspR9I CCNGG 4 cut(s) 228, 576, 795, 796
Mva1269I GAATGC 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 47, 336, 488
NarI GGCGCC 1 cut(s) 330
NciI CCSGG 4 cut(s) 228, 576, 795, 796
NcoI CCATGG 1 cut(s) 149
NdeI CATATG 1 cut(s) 775
NdeII GATC 2 cut(s) 265, 610
NlaIII CATG 5 cut(s) 106, 153, 325, 467, 670
NlaIV GGNNCC 4 cut(s) 64, 183, 331, 717
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 296
PctI GAATGC 1 cut(s) 474
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 3 cut(s) 118, 146, 546
PluTI GGCGCC 1 cut(s) 333
Psp124BI GAGCTC 4 cut(s) 297, 412, 633, 648
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 4 cut(s) 64, 183, 331, 717
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 8 cut(s) 91, 158, 181, 182, 318, 460, 542, 716
PspXI VCTCGAGB 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 167
PvuII CAGCTG 2 cut(s) 251, 263
RsaI GTAC 4 cut(s) 155, 176, 572, 792
RsaNI GTAC 4 cut(s) 154, 175, 571, 791
SacI GAGCTC 4 cut(s) 297, 412, 633, 648
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 3 cut(s) 117, 145, 545
Sau3AI GATC 2 cut(s) 265, 610
Sau96I GGNCC 8 cut(s) 91, 158, 181, 182, 318, 460, 542, 716
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 4 cut(s) 228, 576, 795, 796
SduI GDGCHC 6 cut(s) 185, 258, 297, 412, 633, 648
SfcI CTRYAG 1 cut(s) 526
SfoI GGCGCC 1 cut(s) 331
Sfr274I CTCGAG 1 cut(s) 296
SinI GGWCC 2 cut(s) 460, 716
SlaI CTCGAG 1 cut(s) 296
SmaI CCCGGG 1 cut(s) 796
SmlI CTYRAG 3 cut(s) 296, 632, 647
SmoI CTYRAG 3 cut(s) 296, 632, 647
Sse9I AATT 3 cut(s) 377, 483, 531
SsiI CCGC 4 cut(s) 114, 515, 545, 579
SspDI GGCGCC 1 cut(s) 329
SspMI CTAG 4 cut(s) 38, 326, 335, 731
SstI GAGCTC 4 cut(s) 297, 412, 633, 648
StyD4I CCNGG 4 cut(s) 226, 574, 793, 794
StyI CCWWGG 2 cut(s) 149, 334
TaaI ACNGT 2 cut(s) 167, 290
TaqI TCGA 2 cut(s) 297, 674
TaqII GACCGA 1 cut(s) 733
TasI AATT 3 cut(s) 377, 483, 531
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 547
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 2 cut(s) 220, 427
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 116, 144
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 126
TspMI CCCGGG 1 cut(s) 794
TspRI CASTG 2 cut(s) 220, 427
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 460, 716
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 296
XmaI CCCGGG 1 cut(s) 794
XmaJI CCTAGG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 4 cut(s) 38, 326, 335, 731
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.