Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

12135873 .. 12141390

Gene Structure 5518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGCTTGTACGGCCTTCATCAAAGCTCGTCCTTCAGCCTAGTTCAAAGCTCAGGAATCAACAGAGCTCTGTAGAAATGGAGGGCCTTCTTGACCCATGTATGCAAGACAAGTACACTGCTTACGTTGATCTTATGTATTTGGGTGCCCATGGAACCATTGGAAGGTCGGTCAGACCAGCAATCCTAGCCGCAATTGAAGAAGTTAATTCTGATTCAAGCGTTCTCGAGGGGACTACATTGAACATTATTTTCCATGATACAAATTGCAGTGGATTTCTTGGAACTGTGGAAGCTTTGCAGCTCATTGAAAATGATGTGGTTGCTGCAATTGGCCCACAGTCCTCAGGAATAGCTCATGTCATATCCCACGTTGTTAATGAGCTCCATAGTGACTATTTTCAAATGTATGCAGTTGCTGATATGGTTGAGTATTTCGGATGGAGAGAAGTAATTGCCATATTTGTAGATGATGATTGTGGCAGAAATGGGATTTCAGTACTAGGTGATGCCTTAGCAAAGAAGCGTTCCAAGATTGCTTACAAGGCTGCCTTCTCTCCTGGAGCCCCATTAAGCGATATCAATGACTTGTTGGTGGGAGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTAAATCCTGACTCTGGTTTGTCAATCTTTTCTGTTGCCAAGGATCTTGGAATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTACTAATTTAGATTCATTAGTACCACCTGACCCTGACAAAATGAATCTTTTACAAGGGGTTGTTGCTCTTCGTCATCATTCCCCGGATACTGATCTCAAAAAGAGTTTTGCAGCTAAATGGAGCAAACTAAAGCATGAAGGGAGTTCGGGCTTCAATTCTTATGCTCTCTATGCATATGACTCTATTTGGTTAGCAGCCCGTGCCCTTGATGTTTTTCTCAATGAAGGAGGGACTGTATCTTTCTCTAGTGACCCAAAGTTGAAAGATACAAATAGAAGCGCACTGCACTTAGCATCACTCCGAATATTTGATGGAGGCCAACGTTACCTGCAGACACTTCTTAAGATGAACTTCACAGGTGTGAGCGGTCAGCTTCAGTTTGATCTGGATAAGAATTTACTTCATCCAGCTTATGATGTTCTGAACATTGGTGGAACTGGATTTCGTAAAATTGGTTATTGGTCAAATTCTTCTGGTCTGTCGACCACCGAGCCAGAGACATTATATGGGAAGTCATTCAATACTTCTACCAGAACTCCACATCTTTATAGTGTTATATGGCCTGGCGAAACTGTAGCTACACCTCGGGGATGGGTATTTCCTAACAATGGCAAGCCACTGCGTATTGCTGTGCCTGAGCGAGTAAGTTACAAAGATTTTGTGTCTAAAGACAAGAGTCCTCCTGGGGTCAGAGGATATTGTATTGATGTATTTGAAGCTGCTATAAACTTGTTGCCTTATCCTGTGCCACGCACATATATGTTGTATGGAGATGGCAAGAGGAATCCCCAGTACAATGATCTTGTTAGTCAAGTTGCTCAAAATAACTTTGATGCAGCTGTTGGGGATGTTACAATAACTACGAATAGGACAAGAATGGTTGATTTTACACAGCCTTACATGGAATCAGGACTAGTTGTAGTTGTTCCTGTCAAACAGGTAAAATCAAACCCTTGGGCTTTCCTGAAGCCATTTACCATTGAGATGTGGTTAGTCACCGGTGCATTCTTCCTTTTTGTGGGAGTCGTTGTTTGGATTCTTGAGCACAGGATTAATCAAGAGTTCCGTGGTCCACCAAGGCAACAGCTCATGACTATTTTTTGGTTTAGTTTCTCGACGATGTTCTTCTCACATAGAGAGAACACTGTGAGCACTCTAGGACGGCTGGTGCTGATTATATGGTTGTTTGTGGTGTTGATTATCAATTCGAGCTATACAGCTAGTTTGACATCGATCCTCACTGTACAACAGCTGACATCACGGATTGAGGGGATAGACAGCTTGATATCAAGTAATGATCCAATCGGAGTTCAAGATGGGTCATTTTCATGGAAATATTTGGTTAATGAGCTCAACATAGCAGAGTCGAGACTTGTTACCTTAAAAACCATGGAAGACTACGTCAAAGCCCTTCAGGATGGACCAAAACGTGGTGGAGTAGCTGCCATTGTCGATGAGCTTCCTTACATTGAGCTGTTTATGTCTGCCACCAAGTGTGCATTCAGGACTGTGGGGCAGGAATTTACAAAAAGCGGATGGGGATTTGCATTCCAAAGGGATTCTCCTCTTGCTGTTGATTTGTCAACTGCCATTCTTCAACTCTCGGAGAACGGTGACCTCCAAAAGATCCATAATAAATGGCTCAGGAGTAGCGAGTGCTCTATGCAACTCAATGAAATGGATGCAGACCGACTATCCCTGACAAGCTTTTGGGGCCTGTTCCTTATATGCGGTATTGCATGCTTCATTGCTCTTGCTGTGTTCTTCTGTAGAATCTTAATGCAATACCGCAGATTTAGTCCAGAGACTGTGGAAGGGGATGTTGAGGAAATTGAACTTCCTCCCAGATCTAGTCGCCGCTCACTCCGGTCAGCTAGTTTCAAAGACTTGTTTGATTTTGTAGATAAGAAAGAAGAAGAGATCAAGCATATGCTAAAGAGAAAGAGCAGCGACAACAGACCAGAAGCCAGCCCAAGCTCTGATGGCAAGTCCAATTCACCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

911

Amino Acids

101.56

Weight (kDa)

5.96

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	57 - 129	6.1e-15	Receptor family ligand binding region
ANF_receptor	PF01094	129 - 388	7.4e-54	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	472 - 554	1.6e-11	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	508 - 792	1.7e-11	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	570 - 824	6.6e-40	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1065
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	2159
AccBSI	CCGCTC	2 cut(s)	1095, 2589
AccI	GTMKAC	1 cut(s)	1211
AciI	CCGC	6 cut(s)	189, 1095, 2262, 2460, 2518, 2587
AclI	AACGTT	1 cut(s)	1051
AclWI	GGATC	4 cut(s)	684, 1957, 2021, 2350
AcsI	RAATTY	3 cut(s)	1123, 1195, 2249
AcuI	CTGAAG	4 cut(s)	17, 1088, 1715, 2126
AdeI	CACNNNGTG	1 cut(s)	2223
AfaI	GTAC	7 cut(s)	9, 113, 498, 630, 750, 1523, 1974
AfiI	CCNNNNNNNGG	5 cut(s)	162, 647, 1337, 1747, 2159
AflII	CTTAAG	1 cut(s)	1070
AflIII	ACRYGT	1 cut(s)	631
AgeI	ACCGGT	1 cut(s)	1727
AhlI	ACTAGT	1 cut(s)	1642
AjnI	CCWGG	3 cut(s)	556, 1291, 1411
AjuI	GAANNNNNNNTTGG	2 cut(s)	2213, 2245
AleI	CACNNNNGTG	1 cut(s)	1088
Alw21I	GWGCWC	6 cut(s)	68, 384, 1776, 1883, 2082, 2390
Alw26I	GTCTC	3 cut(s)	1220, 2092, 2528
AlwI	GGATC	4 cut(s)	684, 1957, 2021, 2350
AlwNI	CAGNNNCTG	2 cut(s)	416, 2537
Ama87I	CYCGRG	3 cut(s)	224, 615, 1314
AoxI	GGCC	6 cut(s)	11, 82, 331, 1045, 1289, 2443
ApeKI	GCWGC	9 cut(s)	298, 323, 545, 839, 923, 1448, 1565, 2171, 2676
ApoI	RAATTY	3 cut(s)	1123, 1195, 2249
AseI	ATTAAT	1 cut(s)	1782
AsiGI	ACCGGT	1 cut(s)	1727
Asp700I	GAANNNNTTC	1 cut(s)	1244
AspLEI	GCGC	1 cut(s)	1010
AspS9I	GGNCC	5 cut(s)	82, 332, 1799, 2150, 2443
AsuC2I	CCSGG	1 cut(s)	812
AsuHPI	GGTGA	4 cut(s)	515, 1717, 2354, 2718
AvaI	CYCGRG	3 cut(s)	224, 615, 1314
AvaII	GGWCC	2 cut(s)	1799, 2150
AxyI	CCTNAGG	1 cut(s)	343
BaeGI	GKGCMC	2 cut(s)	148, 934
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	4 cut(s)	68, 384, 565, 2082
BbsI	GAAGAC	1 cut(s)	2130
Bbv12I	GWGCWC	6 cut(s)	68, 384, 1776, 1883, 2082, 2390
BbvI	GCAGC	9 cut(s)	310, 310, 532, 851, 935, 1435, 1577, 2158, 2688
BccI	CCATC	8 cut(s)	432, 1034, 1314, 1496, 2039, 2141, 2259, 2705
BceAI	ACGGC	2 cut(s)	26, 1907
BciT130I	CCWGG	3 cut(s)	558, 1293, 1413
BciVI	GTATCC	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	812
BcoDI	GTCTC	3 cut(s)	1220, 2092, 2528
BcuI	ACTAGT	1 cut(s)	1642
BfaI	CTAG	9 cut(s)	39, 185, 500, 975, 1643, 1886, 1950, 2580, 2604
BfmI	CTRYAG	4 cut(s)	69, 1058, 1302, 2497
BfrI	CTTAAG	1 cut(s)	1070
BfuAI	ACCTGC	1 cut(s)	1065
BfuI	GTATCC	1 cut(s)	808
BglII	AGATCT	1 cut(s)	2576
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	4 cut(s)	558, 812, 1293, 1413
Bme18I	GGWCC	2 cut(s)	1799, 2150
BmeT110I	CYCGRG	3 cut(s)	224, 615, 1314
BmgT120I	GGNCC	5 cut(s)	82, 332, 1799, 2150, 2443
BmiI	GGNNCC	4 cut(s)	145, 154, 562, 2444
BmrFI	CCNGG	4 cut(s)	558, 812, 1293, 1413
BmrI	ACTGGG	1 cut(s)	1513
BmsI	GCATC	4 cut(s)	496, 1031, 1552, 2401
BmuI	ACTGGG	1 cut(s)	1513
BoxI	GACNNNNGTC	1 cut(s)	1404
BpiI	GAAGAC	1 cut(s)	2130
BplI	GAGNNNNNCTC	2 cut(s)	588, 620
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	4 cut(s)	50, 511, 1365, 2372
BpuEI	CTTGAG	1 cut(s)	1790
BpuMI	CCSGG	1 cut(s)	812
Bsa29I	ATCGAT	1 cut(s)	1961
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	9 cut(s)	148, 672, 810, 1313, 1412, 1682, 1795, 1805, 2118
BsaWI	WCCGGW	2 cut(s)	1727, 2595
BsaXI	ACNNNNNCTCC	6 cut(s)	948, 978, 1249, 1279, 1743, 1773
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 647, 1337, 1747, 2159
Bse118I	RCCGGY	1 cut(s)	1727
Bse1I	ACTGG	3 cut(s)	693, 1171, 1519
Bse21I	CCTNAGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	2475
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	3 cut(s)	558, 1293, 1413
BseCI	ATCGAT	1 cut(s)	1961
BseDI	CCNNGG	9 cut(s)	148, 672, 810, 1313, 1412, 1682, 1795, 1805, 2118
BseGI	GGATG	8 cut(s)	443, 1132, 1325, 1582, 2152, 2270, 2416, 2554
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	5 cut(s)	162, 647, 1337, 1747, 2159
BseMI	GCAATG	1 cut(s)	2475
BseMII	CTCAG	4 cut(s)	64, 357, 1356, 2386
BseNI	ACTGG	3 cut(s)	693, 1171, 1519
BseRI	GAGGAG	1 cut(s)	2283
BseSI	GKGCMC	2 cut(s)	148, 934
BseXI	GCAGC	9 cut(s)	310, 310, 532, 851, 935, 1435, 1577, 2158, 2688
BsgI	GTGCAG	1 cut(s)	998
BshFI	GGCC	6 cut(s)	13, 84, 333, 1047, 1291, 2445
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	1727
BshVI	ATCGAT	1 cut(s)	1961
BsiHKAI	GWGCWC	6 cut(s)	68, 384, 1776, 1883, 2082, 2390
BsiHKCI	CYCGRG	3 cut(s)	224, 615, 1314
BsiSI	CCGG	3 cut(s)	812, 1728, 2596
BslFI	GGGAC	2 cut(s)	244, 973
BslI	CCNNNNNNNGG	5 cut(s)	162, 647, 1337, 1747, 2159
BsmAI	GTCTC	3 cut(s)	1220, 2092, 2528
BsmFI	GGGAC	2 cut(s)	244, 973
BsmI	GAATGC	3 cut(s)	1733, 2228, 2276
BsnI	GGCC	6 cut(s)	13, 84, 333, 1047, 1291, 2445
BsoBI	CYCGRG	3 cut(s)	224, 615, 1314
Bsp1286I	GDGCHC	9 cut(s)	68, 148, 384, 565, 934, 1776, 1883, 2082, 2390
Bsp1407I	TGTACA	2 cut(s)	628, 1972
Bsp19I	CCATGG	2 cut(s)	148, 2118
BspACI	CCGC	6 cut(s)	189, 1095, 2262, 2460, 2518, 2587
BspANI	GGCC	6 cut(s)	13, 84, 333, 1047, 1291, 2445
BspCNI	CTCAG	4 cut(s)	63, 356, 1357, 2385
BspDI	ATCGAT	1 cut(s)	1961
BspHI	TCATGA	1 cut(s)	1818
BspLI	GGNNCC	4 cut(s)	145, 154, 562, 2444
BspMAI	CTGCAG	1 cut(s)	1062
BspMI	ACCTGC	1 cut(s)	1065
BspPI	GGATC	4 cut(s)	684, 1957, 2021, 2350
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	1070
BsrBI	CCGCTC	2 cut(s)	1095, 2589
BsrDI	GCAATG	1 cut(s)	2475
BsrFI	RCCGGY	1 cut(s)	1727
BsrGI	TGTACA	2 cut(s)	628, 1972
BsrI	ACTGG	3 cut(s)	693, 1171, 1519
BssAI	RCCGGY	1 cut(s)	1727
BssECI	CCNNGG	9 cut(s)	148, 672, 810, 1313, 1412, 1682, 1795, 1805, 2118
BssT1I	CCWWGG	5 cut(s)	148, 672, 1682, 1805, 2118
Bst2UI	CCWGG	3 cut(s)	558, 1293, 1413
Bst4CI	ACNGT	9 cut(s)	286, 339, 964, 1303, 1876, 1972, 2239, 2342, 2539
Bst6I	CTCTTC	2 cut(s)	801, 2640
BstAFI	CTTAAG	1 cut(s)	1070
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstAUI	TGTACA	2 cut(s)	628, 1972
BstC8I	GCNNGC	3 cut(s)	1343, 2470, 2698
BstDEI	CTNAG	6 cut(s)	50, 343, 511, 1018, 1365, 2372
BstDSI	CCRYGG	3 cut(s)	148, 1795, 2118
BstEII	GGTNACC	1 cut(s)	2342
BstF5I	GGATG	8 cut(s)	443, 1132, 1325, 1582, 2152, 2270, 2416, 2554
BstHHI	GCGC	1 cut(s)	1010
BstMAI	GTCTC	3 cut(s)	1220, 2092, 2528
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 185, 542, 899, 929, 2442, 2712
BstNI	CCWGG	3 cut(s)	558, 1293, 1413
BstNSI	RCATGY	2 cut(s)	635, 2472
BstPAI	GACNNNNGTC	1 cut(s)	1404
BstPI	GGTNACC	1 cut(s)	2342
BstSCI	CCNGG	4 cut(s)	556, 810, 1291, 1411
BstSFI	CTRYAG	4 cut(s)	69, 1058, 1302, 2497
BstSLI	GKGCMC	2 cut(s)	148, 934
BstV1I	GCAGC	9 cut(s)	310, 310, 532, 851, 935, 1435, 1577, 2158, 2688
BstV2I	GAAGAC	1 cut(s)	2130
BstX2I	RGATCY	3 cut(s)	676, 2355, 2576
BstYI	RGATCY	3 cut(s)	676, 2355, 2576
Bsu15I	ATCGAT	1 cut(s)	1961
Bsu36I	CCTNAGG	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	6 cut(s)	13, 84, 333, 1047, 1291, 2445
BsuTUI	ATCGAT	1 cut(s)	1961
BtgI	CCRYGG	3 cut(s)	148, 1795, 2118
BtsCI	GGATG	8 cut(s)	443, 1132, 1325, 1582, 2152, 2270, 2416, 2554
BtsI	GCAGTG	4 cut(s)	114, 274, 1010, 1346
BtsIMutI	CAGTG	7 cut(s)	114, 274, 700, 1010, 1346, 1872, 1968
BveI	ACCTGC	1 cut(s)	1065
Cac8I	GCNNGC	3 cut(s)	1343, 2470, 2698
CaiI	CAGNNNCTG	2 cut(s)	416, 2537
CciI	TCATGA	1 cut(s)	1818
CfoI	GCGC	1 cut(s)	1010
Cfr10I	RCCGGY	1 cut(s)	1727
Cfr13I	GGNCC	5 cut(s)	82, 332, 1799, 2150, 2443
ClaI	ATCGAT	1 cut(s)	1961
Csp6I	GTAC	7 cut(s)	8, 112, 497, 629, 749, 1522, 1973
CspAI	ACCGGT	1 cut(s)	1727
CviQI	GTAC	7 cut(s)	8, 112, 497, 629, 749, 1522, 1973
DdeI	CTNAG	6 cut(s)	50, 343, 511, 1018, 1365, 2372
DraIII	CACNNNGTG	1 cut(s)	2223
Eam1104I	CTCTTC	2 cut(s)	801, 2640
EarI	CTCTTC	2 cut(s)	801, 2640
Ecl136II	GAGCTC	3 cut(s)	66, 382, 2080
Eco130I	CCWWGG	5 cut(s)	148, 672, 1682, 1805, 2118
Eco24I	GRGCYC	4 cut(s)	68, 384, 565, 2082
Eco32I	GATATC	2 cut(s)	577, 2016
Eco47I	GGWCC	2 cut(s)	1799, 2150
Eco53kI	GAGCTC	3 cut(s)	66, 382, 2080
Eco57I	CTGAAG	4 cut(s)	17, 1088, 1715, 2126
Eco81I	CCTNAGG	1 cut(s)	343
Eco88I	CYCGRG	3 cut(s)	224, 615, 1314
Eco91I	GGTNACC	1 cut(s)	2342
EcoICRI	GAGCTC	3 cut(s)	66, 382, 2080
EcoO109I	RGGNCCY	2 cut(s)	82, 2443
EcoO65I	GGTNACC	1 cut(s)	2342
EcoRII	CCWGG	3 cut(s)	556, 1291, 1411
EcoRV	GATATC	2 cut(s)	577, 2016
EcoT14I	CCWWGG	5 cut(s)	148, 672, 1682, 1805, 2118
EcoT22I	ATGCAT	1 cut(s)	904
EcoT38I	GRGCYC	4 cut(s)	68, 384, 565, 2082
ErhI	CCWWGG	5 cut(s)	148, 672, 1682, 1805, 2118
FalI	AAGNNNNNCTT	4 cut(s)	533, 565, 1064, 1096
FaqI	GGGAC	2 cut(s)	244, 973
FauNDI	CATATG	2 cut(s)	904, 2658
FblI	GTMKAC	1 cut(s)	1211
FokI	GGATG	8 cut(s)	450, 1119, 1332, 1589, 2159, 2277, 2423, 2561
FriOI	GRGCYC	4 cut(s)	68, 384, 565, 2082
FspBI	CTAG	9 cut(s)	39, 185, 500, 975, 1643, 1886, 1950, 2580, 2604
GlaI	GCGC	1 cut(s)	1009
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	6 cut(s)	13, 84, 333, 1047, 1291, 2445
HapII	CCGG	3 cut(s)	812, 1728, 2596
HhaI	GCGC	1 cut(s)	1010
Hin6I	GCGC	1 cut(s)	1008
HinP1I	GCGC	1 cut(s)	1008
HincII	GTYRAC	2 cut(s)	1212, 2313
HindII	GTYRAC	2 cut(s)	1212, 2313
HindIII	AAGCTT	2 cut(s)	291, 2434
HpaII	CCGG	3 cut(s)	812, 1728, 2596
HphI	GGTGA	4 cut(s)	515, 1717, 2354, 2718
Hpy166II	GTNNAC	5 cut(s)	114, 601, 1212, 1802, 2313
Hpy188I	TCNGA	9 cut(s)	173, 211, 437, 1031, 1152, 1421, 2036, 2335, 2710
Hpy8I	GTNNAC	5 cut(s)	114, 601, 1212, 1802, 2313
Hpy99I	CGWCG	1 cut(s)	1849
HpyAV	CCTTC	9 cut(s)	24, 41, 95, 156, 559, 860, 947, 2150, 2537
HpyCH4III	ACNGT	9 cut(s)	286, 339, 964, 1303, 1876, 1972, 2239, 2342, 2539
HpyCH4IV	ACGT	5 cut(s)	123, 369, 1051, 2130, 2158
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 185, 542, 899, 929, 2442, 2712
HpyF3I	CTNAG	6 cut(s)	50, 343, 511, 1018, 1365, 2372
HpySE526I	ACGT	5 cut(s)	123, 369, 1051, 2130, 2158
HspAI	GCGC	1 cut(s)	1008
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	3 cut(s)	387, 560, 849
Lsp1109I	GCAGC	9 cut(s)	310, 310, 532, 851, 935, 1435, 1577, 2158, 2688
LweI	GCATC	4 cut(s)	496, 1031, 1552, 2401
MaeI	CTAG	9 cut(s)	39, 185, 500, 975, 1643, 1886, 1950, 2580, 2604
MaeII	ACGT	5 cut(s)	123, 369, 1051, 2130, 2158
MaeIII	GTNAC	8 cut(s)	389, 977, 1052, 1376, 1579, 1723, 2104, 2342
MbiI	CCGCTC	2 cut(s)	1095, 2589
MfeI	CAATTG	2 cut(s)	192, 327
MflI	RGATCY	3 cut(s)	676, 2355, 2576
MhlI	GDGCHC	9 cut(s)	68, 148, 384, 565, 934, 1776, 1883, 2082, 2390
MlyI	GAGTC	5 cut(s)	638, 902, 1414, 1761, 2102
Mph1103I	ATGCAT	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	1244
MseI	TTAA	9 cut(s)	204, 375, 569, 1071, 1782, 2073, 2111, 2507, 2734
MslI	CAYNNNNRTG	4 cut(s)	1088, 1487, 1712, 2056
MspA1I	CMGCKG	2 cut(s)	1568, 1981
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	3 cut(s)	812, 1728, 2596
MspR9I	CCNGG	4 cut(s)	558, 812, 1293, 1413
MunI	CAATTG	2 cut(s)	192, 327
Mva1269I	GAATGC	3 cut(s)	1733, 2228, 2276
MvaI	CCWGG	3 cut(s)	558, 1293, 1413
MwoI	GCNNNNNNNGC	7 cut(s)	10, 185, 542, 899, 929, 2442, 2712
NciI	CCSGG	1 cut(s)	812
NcoI	CCATGG	2 cut(s)	148, 2118
NdeI	CATATG	2 cut(s)	904, 2658
NlaIV	GGNNCC	4 cut(s)	145, 154, 562, 2444
NmuCI	GTSAC	4 cut(s)	389, 977, 1723, 2342
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	2 cut(s)	635, 2472
OliI	CACNNNNGTG	1 cut(s)	1088
PaeI	GCATGC	1 cut(s)	2472
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	1818
PciI	ACATGT	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	801
PctI	GAATGC	3 cut(s)	1733, 2228, 2276
PdmI	GAANNNNTTC	1 cut(s)	1244
PflFI	GACNNNGTC	1 cut(s)	2129
PflMI	CCANNNNNTGG	1 cut(s)	2159
PfoI	TCCNGGA	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	1727
PleI	GAGTC	5 cut(s)	638, 902, 1413, 1760, 2101
PpsI	GAGTC	5 cut(s)	638, 902, 1413, 1760, 2101
PscI	ACATGT	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	1404
PshBI	ATTAAT	1 cut(s)	1782
Psp124BI	GAGCTC	3 cut(s)	68, 384, 2082
Psp1406I	AACGTT	1 cut(s)	1051
Psp6I	CCWGG	3 cut(s)	556, 1291, 1411
PspEI	GGTNACC	1 cut(s)	2342
PspGI	CCWGG	3 cut(s)	556, 1291, 1411
PspN4I	GGNNCC	4 cut(s)	145, 154, 562, 2444
PspPI	GGNCC	5 cut(s)	82, 332, 1799, 2150, 2443
PstI	CTGCAG	1 cut(s)	1062
PstNI	CAGNNNCTG	2 cut(s)	416, 2537
PsuI	RGATCY	3 cut(s)	676, 2355, 2576
PsyI	GACNNNGTC	1 cut(s)	2129
PvuII	CAGCTG	2 cut(s)	1568, 1981
RsaI	GTAC	7 cut(s)	9, 113, 498, 630, 750, 1523, 1974
RsaNI	GTAC	7 cut(s)	8, 112, 497, 629, 749, 1522, 1973
RseI	CAYNNNNRTG	4 cut(s)	1088, 1487, 1712, 2056
SacI	GAGCTC	3 cut(s)	68, 384, 2082
SalI	GTCGAC	1 cut(s)	1210
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	9 cut(s)	204, 375, 569, 1071, 1782, 2073, 2111, 2507, 2734
Sau96I	GGNCC	5 cut(s)	82, 332, 1799, 2150, 2443
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	5 cut(s)	638, 902, 1414, 1761, 2102
ScrFI	CCNGG	4 cut(s)	558, 812, 1293, 1413
SduI	GDGCHC	9 cut(s)	68, 148, 384, 565, 934, 1776, 1883, 2082, 2390
SfaNI	GCATC	4 cut(s)	496, 1031, 1552, 2401
SfcI	CTRYAG	4 cut(s)	69, 1058, 1302, 2497
Sfr274I	CTCGAG	1 cut(s)	224
SgrAI	CRCCGGYG	1 cut(s)	1727
SinI	GGWCC	2 cut(s)	1799, 2150
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	4 cut(s)	1088, 1487, 1712, 2056
SmlI	CTYRAG	3 cut(s)	224, 1070, 1769
SmoI	CTYRAG	3 cut(s)	224, 1070, 1769
SpeI	ACTAGT	1 cut(s)	1642
SphI	GCATGC	1 cut(s)	2472
SsiI	CCGC	6 cut(s)	189, 1095, 2262, 2460, 2518, 2587
SspI	AATATT	2 cut(s)	1035, 2066
SspMI	CTAG	9 cut(s)	39, 185, 500, 975, 1643, 1886, 1950, 2580, 2604
SstI	GAGCTC	3 cut(s)	68, 384, 2082
StyD4I	CCNGG	4 cut(s)	556, 810, 1291, 1411
StyI	CCWWGG	5 cut(s)	148, 672, 1682, 1805, 2118
TaaI	ACNGT	9 cut(s)	286, 339, 964, 1303, 1876, 1972, 2239, 2342, 2539
TaiI	ACGT	5 cut(s)	126, 372, 1054, 2133, 2161
TaqI	TCGA	7 cut(s)	225, 1211, 1844, 1937, 1961, 2096, 2181
TaqII	GACCGA	2 cut(s)	157, 2433
TatI	WGTACW	5 cut(s)	111, 496, 628, 1521, 1972
TauI	GCSGC	2 cut(s)	191, 2589
Tru1I	TTAA	9 cut(s)	204, 375, 569, 1071, 1782, 2073, 2111, 2507, 2734
Tru9I	TTAA	9 cut(s)	204, 375, 569, 1071, 1782, 2073, 2111, 2507, 2734
TscAI	CASTG	7 cut(s)	121, 274, 700, 1017, 1353, 1879, 1975
TseFI	GTSAC	4 cut(s)	389, 977, 1723, 2342
TseI	GCWGC	9 cut(s)	298, 323, 545, 839, 923, 1448, 1565, 2171, 2676
Tsp45I	GTSAC	4 cut(s)	389, 977, 1723, 2342
TspGWI	ACGGA	2 cut(s)	1784, 2005
TspRI	CASTG	7 cut(s)	121, 274, 700, 1017, 1353, 1879, 1975
Tth111I	GACNNNGTC	1 cut(s)	2129
Van91I	CCANNNNNTGG	1 cut(s)	2159
Vha464I	CTTAAG	1 cut(s)	1070
VpaK11BI	GGWCC	2 cut(s)	1799, 2150
VspI	ATTAAT	1 cut(s)	1782
XapI	RAATTY	3 cut(s)	1123, 1195, 2249
XceI	RCATGY	2 cut(s)	635, 2472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	1211
XmnI	GAANNNNTTC	1 cut(s)	1244
XspI	CTAG	9 cut(s)	39, 185, 500, 975, 1643, 1886, 1950, 2580, 2604
ZrmI	AGTACT	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.