RchiOBHm_Chr2g0159571

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
75663817 .. 75666648
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52814

Sequence Viewer

Length: 1152 bp
ATGCCTGTACGGCCTTCATCAAAGCTCGTCCTTCAGCCTAGTTCAAAGCTCAGGAATCAACAGAGCTCTGTAGAAATGGAGGCCTTCTTGACCCATGTATGCAAGACAAGAACACTGCTTACATTGATCTTATGTATTTGGGTGCCCATAGAAGTGATGGCTCAGACTGGAAATGCCCCCGTCTCGTCTAAGAGGCCGAGTTCTCTGAATATTGGAGCTCTGTTTACTTTCAATTCAGCCATTGGAAGGTCGGCCAAACCAGCAATCCTAGCTGCAATTGAAGAAGTTAATTCTGATTCAAGCGTTCTCGAGGGGACTAAATTGAACATTATTTTCCATGATACAAATTGCAGTGGATTTCTTGGAACTGTGGAAGCTTTGCAGCTCATTGAAAATGATGTGGTTGCTGCAATTGGCCCACAGTCCTCAGGAATAGCTCATGTCATATCCCACGTTGTTAATGAGCTCCATGTACCACTTCTGTCATTTGGAGCAACAGACCCCTCCCTTTCTGCTCTACAATACCCGTATTTTGTACGCACCACGCAGAGTGACTATTTTCAAATGTATGCAGTTGCTGATATGGTTGAGTATTTCGGATGGAGAGAAGTAATTGCCATATTTGTAGATGATGATTGTGGCAGAAATGGGATTTCAGTATTAGGTGATGCCTTAGCAAAGAAGCGTTCCAAGATTGCGTACAAGGCTGCCTTCTCTCCTGGAGCCCCATTAAGCGATATCAATGACTTGTTGGTGGGAGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTAAATCCTGACTCTGGTTTGTCAATCTTTTCTGTTGCCAAGGATCTTGGAATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTACTAATTTAGATTCATTAGTACCACCTGACCCTGACAAAATGAATCTTTTACAAGGGGTTGTTGCTCTTCGTCATCATTCCCCGGATACTGATCTCAAAAAGAGTTTTGCATCTAAATGGAGCAAACTAAAGCATGAAGGGAGTTTGGGCTTCAATTCTTATGCTCTCTATGCCTATGACTCTATTTGGTTAGCAGCCCGTGCCCTTGATGTTTTCTCAATGAAGGAGGGACTGTATCTTTCTCTAGTGACCCAAAGTTGA

Protein Analysis

383

Amino Acids

41.76

Weight (kDa)

5.85

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 71 - 366 1.4e-19 Periplasmic binding protein
ANF_receptor PF01094 86 - 370 9.9e-75 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AclWI GGATC 1 cut(s) 846
AcoI YGGCCR 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 6 cut(s) 9, 474, 537, 701, 792, 912
AfiI CCNNNNNNNGG 2 cut(s) 246, 809
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 8 cut(s) 45, 232, 281, 300, 325, 392, 563, 1045
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 9 cut(s) 25, 49, 66, 218, 272, 377, 385, 437, 466
AluI AGCT 9 cut(s) 25, 49, 66, 218, 272, 377, 385, 437, 466
Alw21I GWGCWC 3 cut(s) 68, 220, 468
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 846
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 2 cut(s) 308, 777
AoxI GGCC 5 cut(s) 11, 81, 194, 252, 415
ApeKI GCWGC 5 cut(s) 272, 382, 407, 707, 1085
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 1 cut(s) 677
AvaI CYCGRG 2 cut(s) 308, 777
AxyI CCTNAGG 1 cut(s) 427
BaeGI GKGCMC 2 cut(s) 147, 1096
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 4 cut(s) 68, 220, 468, 727
Bbv12I GWGCWC 3 cut(s) 68, 220, 468
BbvI GCAGC 5 cut(s) 259, 394, 394, 694, 1097
BccI CCATC 2 cut(s) 151, 594
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 720
BciVI GTATCC 1 cut(s) 970
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 3 cut(s) 39, 269, 1136
BfmI CTRYAG 1 cut(s) 69
BfuI GTATCC 1 cut(s) 970
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 5 cut(s) 273, 383, 408, 708, 1086
BlsI GCNGC 5 cut(s) 274, 384, 409, 709, 1087
Bme1390I CCNGG 2 cut(s) 720, 974
BmeT110I CYCGRG 2 cut(s) 308, 777
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 144, 724
BmrFI CCNGG 2 cut(s) 720, 974
BmsI GCATC 2 cut(s) 658, 1010
BplI GAGNNNNNCTC 2 cut(s) 750, 782
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 2 cut(s) 50, 673
BpuMI CCSGG 1 cut(s) 974
BsaBI GATNNNNATC 1 cut(s) 981
BsaJI CCNNGG 2 cut(s) 834, 972
BsaXI ACNNNNNCTCC 2 cut(s) 1109, 1139
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 809
Bse1I ACTGG 2 cut(s) 172, 855
Bse21I CCTNAGG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 2 cut(s) 834, 972
BseGI GGATG 1 cut(s) 605
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 2 cut(s) 246, 809
BseMII CTCAG 3 cut(s) 64, 176, 441
BseNI ACTGG 2 cut(s) 172, 855
BseSI GKGCMC 2 cut(s) 147, 1096
BseXI GCAGC 5 cut(s) 259, 394, 394, 694, 1097
BshFI GGCC 5 cut(s) 13, 83, 196, 254, 417
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 3 cut(s) 68, 220, 468
BsiHKCI CYCGRG 2 cut(s) 308, 777
BsiSI CCGG 1 cut(s) 974
BslFI GGGAC 2 cut(s) 328, 1134
BslI CCNNNNNNNGG 2 cut(s) 246, 809
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 328, 1134
BsnI GGCC 5 cut(s) 13, 83, 196, 254, 417
BsoBI CYCGRG 2 cut(s) 308, 777
Bsp1286I GDGCHC 6 cut(s) 68, 147, 220, 468, 727, 1096
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 3 cut(s) 126, 838, 982
BspANI GGCC 5 cut(s) 13, 83, 196, 254, 417
BspCNI CTCAG 3 cut(s) 63, 175, 440
BspLI GGNNCC 2 cut(s) 144, 724
BspPI GGATC 1 cut(s) 846
BspQI GCTCTTC 1 cut(s) 963
BspT107I GGYRCC 1 cut(s) 142
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 2 cut(s) 172, 855
BssECI CCNNGG 2 cut(s) 834, 972
BssMI GATC 3 cut(s) 126, 838, 982
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 3 cut(s) 370, 423, 1125
Bst6I CTCTTC 1 cut(s) 963
BstAPI GCANNNNNTGC 1 cut(s) 1091
BstAUI TGTACA 1 cut(s) 790
BstDEI CTNAG 5 cut(s) 50, 162, 189, 427, 673
BstF5I GGATG 1 cut(s) 605
BstKTI GATC 3 cut(s) 129, 841, 985
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 126, 838, 982
BstMWI GCNNNNNNNGC 6 cut(s) 10, 260, 269, 704, 1061, 1091
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 718, 972
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 2 cut(s) 147, 1096
BstV1I GCAGC 5 cut(s) 259, 394, 394, 694, 1097
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
Bsu36I CCTNAGG 1 cut(s) 427
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 5 cut(s) 13, 83, 196, 254, 417
BtsCI GGATG 1 cut(s) 605
BtsI GCAGTG 2 cut(s) 113, 358
BtsIMutI CAGTG 3 cut(s) 113, 358, 862
CaiI CAGNNNCTG 1 cut(s) 578
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 6 cut(s) 8, 473, 536, 700, 791, 911
CviAII CATG 7 cut(s) 95, 338, 440, 470, 769, 794, 1025
CviQI GTAC 6 cut(s) 8, 473, 536, 700, 791, 911
DdeI CTNAG 5 cut(s) 50, 162, 189, 427, 673
DpnI GATC 3 cut(s) 128, 840, 984
DpnII GATC 3 cut(s) 126, 838, 982
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Ecl136II GAGCTC 3 cut(s) 66, 218, 466
Eco130I CCWWGG 1 cut(s) 834
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 4 cut(s) 68, 220, 468, 727
Eco32I GATATC 1 cut(s) 739
Eco53kI GAGCTC 3 cut(s) 66, 218, 466
Eco57I CTGAAG 1 cut(s) 17
Eco81I CCTNAGG 1 cut(s) 427
Eco88I CYCGRG 2 cut(s) 308, 777
EcoICRI GAGCTC 3 cut(s) 66, 218, 466
EcoRII CCWGG 1 cut(s) 718
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 834
EcoT38I GRGCYC 4 cut(s) 68, 220, 468, 727
ErhI CCWWGG 1 cut(s) 834
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 7 cut(s) 98, 341, 443, 473, 772, 797, 1028
FalI AAGNNNNNCTT 2 cut(s) 695, 727
FaqI GGGAC 2 cut(s) 328, 1134
FatI CATG 7 cut(s) 94, 337, 439, 469, 768, 793, 1024
Fnu4HI GCNGC 5 cut(s) 273, 383, 408, 708, 1086
FokI GGATG 1 cut(s) 612
FriOI GRGCYC 4 cut(s) 68, 220, 468, 727
Fsp4HI GCNGC 5 cut(s) 273, 383, 408, 708, 1086
FspBI CTAG 3 cut(s) 39, 269, 1136
GluI GCNGC 5 cut(s) 273, 383, 408, 708, 1086
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 5 cut(s) 13, 83, 196, 254, 417
HapII CCGG 1 cut(s) 974
Hin1II CATG 7 cut(s) 98, 341, 443, 473, 772, 797, 1028
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 7 cut(s) 55, 296, 773, 806, 902, 934, 1070
HpaII CCGG 1 cut(s) 974
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 2 cut(s) 225, 763
Hpy188I TCNGA 4 cut(s) 165, 207, 295, 599
Hpy188III TCNNGA 5 cut(s) 52, 88, 308, 429, 803
Hpy8I GTNNAC 2 cut(s) 225, 763
HpyAV CCTTC 7 cut(s) 24, 41, 94, 240, 721, 1022, 1108
HpyCH4III ACNGT 3 cut(s) 370, 423, 1125
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 8 cut(s) 102, 275, 351, 382, 410, 572, 875, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 260, 269, 704, 1061, 1091
HpyF3I CTNAG 5 cut(s) 50, 162, 189, 427, 673
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 7 cut(s) 98, 341, 443, 473, 772, 797, 1028
Kzo9I GATC 3 cut(s) 126, 838, 982
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 5 cut(s) 215, 471, 491, 722, 1011
Lsp1109I GCAGC 5 cut(s) 259, 394, 394, 694, 1097
LweI GCATC 2 cut(s) 658, 1010
MaeI CTAG 3 cut(s) 39, 269, 1136
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 551, 1138
MalI GATC 3 cut(s) 128, 840, 984
MboI GATC 3 cut(s) 126, 838, 982
MboII GAAGA 2 cut(s) 293, 950
MfeI CAATTG 2 cut(s) 276, 411
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 6 cut(s) 68, 147, 220, 468, 727, 1096
MluCI AATT 9 cut(s) 232, 276, 289, 320, 346, 411, 612, 895, 1045
MlyI GAGTC 2 cut(s) 800, 1064
MnlI CCTC 7 cut(s) 73, 186, 304, 436, 514, 776, 1111
MseI TTAA 3 cut(s) 288, 459, 731
MslI CAYNNNNRTG 2 cut(s) 152, 1006
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 2 cut(s) 720, 974
MunI CAATTG 2 cut(s) 276, 411
MvaI CCWGG 1 cut(s) 720
MwoI GCNNNNNNNGC 6 cut(s) 10, 260, 269, 704, 1061, 1091
NciI CCSGG 1 cut(s) 974
NdeII GATC 3 cut(s) 126, 838, 982
NlaIII CATG 7 cut(s) 98, 341, 443, 473, 772, 797, 1028
NlaIV GGNNCC 2 cut(s) 144, 724
NmeAIII GCCGAG 1 cut(s) 222
NmuCI GTSAC 2 cut(s) 551, 1138
NspI RCATGY 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 83
PciI ACATGT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 963
PfeI GAWTC 5 cut(s) 55, 296, 773, 902, 934
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 5 cut(s) 274, 384, 409, 709, 1087
PleI GAGTC 2 cut(s) 800, 1064
PpsI GAGTC 2 cut(s) 800, 1064
PscI ACATGT 1 cut(s) 793
Psp124BI GAGCTC 3 cut(s) 68, 220, 468
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 2 cut(s) 144, 724
PspPI GGNCC 1 cut(s) 416
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 838
RsaI GTAC 6 cut(s) 9, 474, 537, 701, 792, 912
RsaNI GTAC 6 cut(s) 8, 473, 536, 700, 791, 911
RseI CAYNNNNRTG 2 cut(s) 152, 1006
SacI GAGCTC 3 cut(s) 68, 220, 468
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 3 cut(s) 288, 459, 731
SatI GCNGC 5 cut(s) 273, 383, 408, 708, 1086
Sau3AI GATC 3 cut(s) 126, 838, 982
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 800, 1064
ScrFI CCNGG 2 cut(s) 720, 974
SduI GDGCHC 6 cut(s) 68, 147, 220, 468, 727, 1096
SfaNI GCATC 2 cut(s) 658, 1010
SfcI CTRYAG 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 308
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 152, 1006
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 9 cut(s) 232, 276, 289, 320, 346, 411, 612, 895, 1045
SseBI AGGCCT 1 cut(s) 83
SspI AATATT 1 cut(s) 211
SspMI CTAG 3 cut(s) 39, 269, 1136
SstI GAGCTC 3 cut(s) 68, 220, 468
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 718, 972
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 3 cut(s) 370, 423, 1125
TaiI ACGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 309
TasI AATT 9 cut(s) 232, 276, 289, 320, 346, 411, 612, 895, 1045
TatI WGTACW 1 cut(s) 790
TfiI GAWTC 5 cut(s) 55, 296, 773, 902, 934
Tru1I TTAA 3 cut(s) 288, 459, 731
Tru9I TTAA 3 cut(s) 288, 459, 731
TscAI CASTG 3 cut(s) 120, 358, 862
TseFI GTSAC 2 cut(s) 551, 1138
TseI GCWGC 5 cut(s) 272, 382, 407, 707, 1085
Tsp45I GTSAC 2 cut(s) 551, 1138
TspDTI ATGAA 5 cut(s) 6, 894, 947, 1041, 1127
TspRI CASTG 3 cut(s) 120, 358, 862
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 308
XspI CTAG 3 cut(s) 39, 269, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.