Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG557000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGCCTGTACGGCCTTCATCAAAGCTCGTCCTTCAGCCTAGTTCAAAGCTCAGGAATAAACAGAGCTCTGTAGAAATGGAGGCCTTCTTGACCCATGTATGCAAGACAAGAACACTGCTTACATTGATCTTATGTATTTGGGTGCCCATAGAAGTGATGGCTCAGACTGGAAATGCCCCCGTCTCGTCTAAGAGGCCGAGTTCTCTGAATATTGGAGCTCTGTTTACTTTCAATTCAGCCATTGGAAGGTCGGCCAAACCAGCAATCCTAGCTGCAATTGAAGAAGTTAATTCTGATTCAAGCGTTCTCGAGGGGACTAAATTGAACATTATTTTCCATGATACAAATTGCAGTGGATTTCTTGGAACTGTGGAAGCTTTGCAGCTCATTGAAAATGATGTGGTTGCTGCAATTGGCCCACAGTCCTCAGGAATAGCTCATGTCATATCCCACGTTGTTAATGAGCTCCATGTACCACTTCTGTCATTTGGAGCAACAGACCCCTCCCTTTCTGCTCTACAATACCCGTATTTTGTACGCACCACGCAGAGTGACTATTTTCAAATGTATGCAGTTGCTGATATGGTTGAGTATTTCGGATGGAGAGAAGTAATTGCCATATTTGTAGATGATGATTGTGGCAGAAATGGGATTTCAGTATTAGGTGATGCCTTAGCAAAGAAGCGTTCCAAGATTGCGTACAAGGCTGCCTTCTCTCCTGGAGCCCCATTAAGCGATATCAATGACTTGTTGGTGGGAGTAAACCTCATGGAATCTCGGGTGTATATTGTACATGTAAATCCTGACTCTGGTTTGTCAATCTTTTCTGTTGCCAAGGATCTTGGAATGATGACCAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCCTACTAATTTAGATTCATTAGTACCACCTGACCCTGACAAAATGAATCTTTTACAAGGGGTTGTTGCTCTTCGTCATCATTCCCCGGATACTGATCTCAAAAAGAGTTTTGCATCTAAATGGAGCAAACTAAAGCATGAAGGGAGTTTGGGCTTCAATTCTTATGCTCTCTATGCCTATGACTCTATTTGGTTAGCAGCCCGTGCCCTTGATGTTTTTCTCAATGAAGGAGGGACTGTATCTTTCTCTAGTGACCCAAAGTTGAAAGATACAAATAGAAGCGCACTGCACTTAGCATCACTCCGAATATTTGATGGAGGCCAACGTTACCTGCAGACACTTCTTAAGATGAACTTCACAGGTGTGAGTGGTCAGCTTCAGTTTGATCTGGAAAAGAATTTAATTCAACCAGCTTATGATGTTCTGAACATTGGTGGAACTGGATTTCGTAAAATTGGTTATTGGTCAAATTCTTCTGGTCTGTCGACCACCGAGCCAGAGACATTATATGGGAAGTCGTTCAATACTTCTACCAGAACTCCACATCTTTATAGTGTTATATGGCCTGGCGAAACTATAGCTACACCTCGGGGATGGGTATTTCCTAACAATGGCAGGCCACTGCGTATTGCTGTGCCTGAGCGAGTAAGTTACAAAGATTTTGTGTCTAAAGACAAGAGTCCTCCCGGGGTCAGAGGATATTGTATTGATATATTTGAAGCTGCTATAAACTTGTTGCCTTATCCTGTGCCACGCACATATATGTTGTATGGAGATGGCAAGAGGAATCCCCAGTACACCGATCTTGTTGGTCAAGTTGCTCTAAATAACTTTGATGCAGCTGTTGGGGATGTTACAATAACTACAAATAGGACAAGAATGGTTGATTTTACACAGCCTTACATGGAATCAGGACTAGTTGTAGTTGTTCCTGTCAAACAGGTAAAATCAAACCCTTGGGCTTTCCTGAAGCCATTTACTATTGAGATGTGGTTAGTCACCGGTGCATTCTTCCTTCTTGTGGGAGTCGTTGTTTGGATTCTTGAGCACAGGATTAATCACGAGTTCCGTGGTCCACCAAGGGAACAGCTCATGACTATTTTTTGGTTTAGTTTCTCGACGATGTTCTTCTCACATAGAGAGAACACCGTGAGCACTCTAGGACGGCTGGTGCTGATTATATGGTTGTTTGTGGTGTTGATTATCAATTCGAGCTATACAGCTAGTTTGACATCGATCCTCACTGTACAACAGCTGACATCACGGATTGAGGGGATAGACAGCTTGATATCAAGTAATGATCCAATCGGAGTTCAAGATGGGTCATTTTCATGGAAATATTTGGTTAATGAGCTCAACATAGCGGAGTCGAGACTAGTTACCTTAAAAACCATGGAAGACTACATCAAAGCCCTTCAGGATGGACCAAAACGTGGTGGAGTAGCTGCCATTGTCGATGAGCTTCCTTACATTGAGCTGTTTATGTCTGCCACCAAGTGTGCATTCAGGACTGTGGGGCAGGAATTTACAAAAAGCGGATGGGGATTTGCATTCCAAAGGGATTCTCCTCTTGCTGTTGATTTGTCAACTGCCATTCTTCAACTCTCGGAGAATGGTGACCTCCAAAAGATCCATAATAAATGGCTTAGGAGTAGCGAGTGCTCTATGCAACTCAATGAAATGGATGCAGATCGACTATCCCTGACGAGCTTTTGGGGCCTGTTCCTTATATGCGGTATTGCATGCTTCATTGCTCTTGCTGTGTTCTTCTGTAGAATCTTATTGCAATACCGCAGATTTAGTCCAGAGACTGTGGAAGGGGATGTTGAGGAAATTGAACTTCCTCCCAGATCTGGTCGCCGCTCACTCCGGACAGCTAGTTTCAAAAACTTGATGGATTTTGTAGATAAGAAAGAAATAGAGATCAAGCATATGCTAAAGAGAAAGAGCAGCGATAACAAACAAGAAGCTAGTCCAAGCTCTGATGGCAAGTCCCATTCACCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

965

Amino Acids

107.32

Weight (kDa)

6.8

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	71 - 367	1e-18	Periplasmic binding protein
ANF_receptor	PF01094	86 - 442	8.2e-88	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	526 - 608	7.1e-11	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	563 - 846	3.4e-10	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	624 - 878	8e-40	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1227
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	2321
AccBSI	CCGCTC	1 cut(s)	2751
AccI	GTMKAC	1 cut(s)	1373
AccIII	TCCGGA	1 cut(s)	2757
AciI	CCGC	5 cut(s)	2252, 2424, 2622, 2680, 2749
AclI	AACGTT	1 cut(s)	1213
AclWI	GGATC	4 cut(s)	846, 2119, 2183, 2512
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	3 cut(s)	1285, 1357, 2411
AcuI	CTGAAG	4 cut(s)	17, 1250, 1877, 2288
AdeI	CACNNNGTG	1 cut(s)	2385
AfaI	GTAC	8 cut(s)	9, 474, 537, 701, 792, 912, 1685, 2136
AfiI	CCNNNNNNNGG	6 cut(s)	246, 809, 1499, 1909, 2321, 2741
AflII	CTTAAG	1 cut(s)	1232
AflIII	ACRYGT	1 cut(s)	793
AgeI	ACCGGT	1 cut(s)	1889
AhlI	ACTAGT	2 cut(s)	1804, 2263
AjnI	CCWGG	2 cut(s)	718, 1453
AjuI	GAANNNNNNNTTGG	2 cut(s)	2375, 2407
AleI	CACNNNNGTG	1 cut(s)	1250
Alw21I	GWGCWC	7 cut(s)	68, 220, 468, 1938, 2045, 2244, 2552
Alw26I	GTCTC	4 cut(s)	187, 1382, 2254, 2690
AlwI	GGATC	4 cut(s)	846, 2119, 2183, 2512
AlwNI	CAGNNNCTG	2 cut(s)	578, 2699
Ama87I	CYCGRG	4 cut(s)	308, 777, 1476, 1574
Aor13HI	TCCGGA	1 cut(s)	2757
AoxI	GGCC	9 cut(s)	11, 81, 194, 252, 415, 1207, 1451, 1505, 2605
ApeKI	GCWGC	9 cut(s)	272, 382, 407, 707, 1085, 1610, 1727, 2333, 2838
ApoI	RAATTY	3 cut(s)	1285, 1357, 2411
AseI	ATTAAT	1 cut(s)	1944
AsiGI	ACCGGT	1 cut(s)	1889
Asp700I	GAANNNNTTC	1 cut(s)	1406
AspLEI	GCGC	1 cut(s)	1172
AspS9I	GGNCC	4 cut(s)	416, 1961, 2312, 2605
AsuC2I	CCSGG	3 cut(s)	974, 1575, 1576
AsuHPI	GGTGA	4 cut(s)	677, 1879, 2516, 2880
AvaI	CYCGRG	4 cut(s)	308, 777, 1476, 1574
AvaII	GGWCC	2 cut(s)	1961, 2312
AxyI	CCTNAGG	1 cut(s)	427
BaeGI	GKGCMC	2 cut(s)	147, 1096
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	5 cut(s)	68, 220, 468, 727, 2244
BauI	CACGAG	1 cut(s)	1949
BbsI	GAAGAC	1 cut(s)	2292
Bbv12I	GWGCWC	7 cut(s)	68, 220, 468, 1938, 2045, 2244, 2552
BbvI	GCAGC	9 cut(s)	259, 394, 394, 694, 1097, 1597, 1739, 2320, 2850
BceAI	ACGGC	2 cut(s)	26, 2069
BciT130I	CCWGG	2 cut(s)	720, 1455
BciVI	GTATCC	1 cut(s)	970
BcnI	CCSGG	3 cut(s)	974, 1575, 1576
BcoDI	GTCTC	4 cut(s)	187, 1382, 2254, 2690
BcuI	ACTAGT	2 cut(s)	1804, 2263
BfaI	CTAG	9 cut(s)	39, 269, 1137, 1805, 2048, 2112, 2264, 2766, 2859
BfmI	CTRYAG	4 cut(s)	69, 1220, 1464, 2659
BfrI	CTTAAG	1 cut(s)	1232
BfuAI	ACCTGC	1 cut(s)	1227
BfuI	GTATCC	1 cut(s)	970
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	2738
Bme1390I	CCNGG	5 cut(s)	720, 974, 1455, 1575, 1576
Bme18I	GGWCC	2 cut(s)	1961, 2312
BmeT110I	CYCGRG	4 cut(s)	308, 777, 1476, 1574
BmgT120I	GGNCC	4 cut(s)	416, 1961, 2312, 2605
BmiI	GGNNCC	3 cut(s)	144, 724, 2606
BmrFI	CCNGG	5 cut(s)	720, 974, 1455, 1575, 1576
BmrI	ACTGGG	1 cut(s)	1675
BmsI	GCATC	5 cut(s)	658, 1010, 1193, 1714, 2563
BmuI	ACTGGG	1 cut(s)	1675
BoxI	GACNNNNGTC	1 cut(s)	1566
BpiI	GAAGAC	1 cut(s)	2292
BplI	GAGNNNNNCTC	2 cut(s)	750, 782
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	4 cut(s)	50, 673, 1527, 2534
BpuEI	CTTGAG	1 cut(s)	1952
BpuMI	CCSGG	3 cut(s)	974, 1575, 1576
Bsa29I	ATCGAT	1 cut(s)	2123
BsaBI	GATNNNNATC	2 cut(s)	981, 2577
BsaJI	CCNNGG	9 cut(s)	834, 972, 1475, 1574, 1575, 1844, 1957, 1967, 2280
BsaWI	WCCGGW	2 cut(s)	1889, 2757
BsaXI	ACNNNNNCTCC	6 cut(s)	1110, 1140, 1411, 1441, 1905, 1935
Bsc4I	CCNNNNNNNGG	6 cut(s)	246, 809, 1499, 1909, 2321, 2741
Bse118I	RCCGGY	1 cut(s)	1889
Bse1I	ACTGG	4 cut(s)	172, 855, 1333, 1681
Bse21I	CCTNAGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	2637
Bse8I	GATNNNNATC	2 cut(s)	981, 2577
BseAI	TCCGGA	1 cut(s)	2757
BseBI	CCWGG	2 cut(s)	720, 1455
BseCI	ATCGAT	1 cut(s)	2123
BseDI	CCNNGG	9 cut(s)	834, 972, 1475, 1574, 1575, 1844, 1957, 1967, 2280
BseGI	GGATG	7 cut(s)	605, 1487, 1744, 2314, 2432, 2578, 2716
BseJI	GATNNNNATC	2 cut(s)	981, 2577
BseLI	CCNNNNNNNGG	6 cut(s)	246, 809, 1499, 1909, 2321, 2741
BseMI	GCAATG	1 cut(s)	2637
BseMII	CTCAG	4 cut(s)	64, 176, 441, 1518
BseNI	ACTGG	4 cut(s)	172, 855, 1333, 1681
BseRI	GAGGAG	1 cut(s)	2445
BseSI	GKGCMC	2 cut(s)	147, 1096
BseXI	GCAGC	9 cut(s)	259, 394, 394, 694, 1097, 1597, 1739, 2320, 2850
BsgI	GTGCAG	1 cut(s)	1160
BshFI	GGCC	9 cut(s)	13, 83, 196, 254, 417, 1209, 1453, 1507, 2607
BshNI	GGYRCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	1889
BshVI	ATCGAT	1 cut(s)	2123
BsiHKAI	GWGCWC	7 cut(s)	68, 220, 468, 1938, 2045, 2244, 2552
BsiHKCI	CYCGRG	4 cut(s)	308, 777, 1476, 1574
BsiSI	CCGG	4 cut(s)	974, 1575, 1890, 2758
BslFI	GGGAC	3 cut(s)	328, 1135, 2866
BslI	CCNNNNNNNGG	6 cut(s)	246, 809, 1499, 1909, 2321, 2741
BsmAI	GTCTC	4 cut(s)	187, 1382, 2254, 2690
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	3 cut(s)	328, 1135, 2866
BsmI	GAATGC	3 cut(s)	1895, 2390, 2438
BsnI	GGCC	9 cut(s)	13, 83, 196, 254, 417, 1209, 1453, 1507, 2607
BsoBI	CYCGRG	4 cut(s)	308, 777, 1476, 1574
Bsp13I	TCCGGA	1 cut(s)	2757
Bsp1407I	TGTACA	2 cut(s)	790, 2134
Bsp19I	CCATGG	1 cut(s)	2280
BspACI	CCGC	5 cut(s)	2252, 2424, 2622, 2680, 2749
BspANI	GGCC	9 cut(s)	13, 83, 196, 254, 417, 1209, 1453, 1507, 2607
BspCNI	CTCAG	4 cut(s)	63, 175, 440, 1519
BspDI	ATCGAT	1 cut(s)	2123
BspEI	TCCGGA	1 cut(s)	2757
BspHI	TCATGA	1 cut(s)	1980
BspLI	GGNNCC	3 cut(s)	144, 724, 2606
BspMAI	CTGCAG	1 cut(s)	1224
BspMI	ACCTGC	1 cut(s)	1227
BspPI	GGATC	4 cut(s)	846, 2119, 2183, 2512
BspQI	GCTCTTC	1 cut(s)	963
BspT107I	GGYRCC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	1232
BsrBI	CCGCTC	1 cut(s)	2751
BsrDI	GCAATG	1 cut(s)	2637
BsrFI	RCCGGY	1 cut(s)	1889
BsrGI	TGTACA	2 cut(s)	790, 2134
BsrI	ACTGG	4 cut(s)	172, 855, 1333, 1681
BssAI	RCCGGY	1 cut(s)	1889
BssECI	CCNNGG	9 cut(s)	834, 972, 1475, 1574, 1575, 1844, 1957, 1967, 2280
BssSI	CACGAG	1 cut(s)	1949
BssT1I	CCWWGG	4 cut(s)	834, 1844, 1967, 2280
Bst2BI	CACGAG	1 cut(s)	1949
Bst2UI	CCWGG	2 cut(s)	720, 1455
Bst4CI	ACNGT	7 cut(s)	370, 423, 1126, 2038, 2134, 2401, 2701
Bst6I	CTCTTC	1 cut(s)	963
BstAFI	CTTAAG	1 cut(s)	1232
BstAPI	GCANNNNNTGC	1 cut(s)	1091
BstAUI	TGTACA	2 cut(s)	790, 2134
BstC8I	GCNNGC	2 cut(s)	1505, 2632
BstDEI	CTNAG	8 cut(s)	50, 162, 189, 427, 673, 1180, 1527, 2534
BstDSI	CCRYGG	2 cut(s)	1957, 2280
BstEII	GGTNACC	1 cut(s)	2504
BstF5I	GGATG	7 cut(s)	605, 1487, 1744, 2314, 2432, 2578, 2716
BstHHI	GCGC	1 cut(s)	1172
BstMAI	GTCTC	4 cut(s)	187, 1382, 2254, 2690
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 260, 269, 704, 1061, 1091, 2604, 2874
BstNI	CCWGG	2 cut(s)	720, 1455
BstNSI	RCATGY	2 cut(s)	797, 2634
BstPAI	GACNNNNGTC	1 cut(s)	1566
BstPI	GGTNACC	1 cut(s)	2504
BstSCI	CCNGG	5 cut(s)	718, 972, 1453, 1573, 1574
BstSFI	CTRYAG	4 cut(s)	69, 1220, 1464, 2659
BstSLI	GKGCMC	2 cut(s)	147, 1096
BstV1I	GCAGC	9 cut(s)	259, 394, 394, 694, 1097, 1597, 1739, 2320, 2850
BstV2I	GAAGAC	1 cut(s)	2292
BstX2I	RGATCY	3 cut(s)	838, 2517, 2738
BstYI	RGATCY	3 cut(s)	838, 2517, 2738
Bsu15I	ATCGAT	1 cut(s)	2123
Bsu36I	CCTNAGG	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	970
BsuRI	GGCC	9 cut(s)	13, 83, 196, 254, 417, 1209, 1453, 1507, 2607
BsuTUI	ATCGAT	1 cut(s)	2123
BtgI	CCRYGG	2 cut(s)	1957, 2280
BtsCI	GGATG	7 cut(s)	605, 1487, 1744, 2314, 2432, 2578, 2716
BtsI	GCAGTG	4 cut(s)	113, 358, 1172, 1508
BtsIMutI	CAGTG	6 cut(s)	113, 358, 862, 1172, 1508, 2130
BveI	ACCTGC	1 cut(s)	1227
Cac8I	GCNNGC	2 cut(s)	1505, 2632
CaiI	CAGNNNCTG	2 cut(s)	578, 2699
CciI	TCATGA	1 cut(s)	1980
CfoI	GCGC	1 cut(s)	1172
Cfr10I	RCCGGY	1 cut(s)	1889
Cfr13I	GGNCC	4 cut(s)	416, 1961, 2312, 2605
Cfr9I	CCCGGG	1 cut(s)	1574
ClaI	ATCGAT	1 cut(s)	2123
Csp6I	GTAC	8 cut(s)	8, 473, 536, 700, 791, 911, 1684, 2135
CspAI	ACCGGT	1 cut(s)	1889
CviQI	GTAC	8 cut(s)	8, 473, 536, 700, 791, 911, 1684, 2135
DdeI	CTNAG	8 cut(s)	50, 162, 189, 427, 673, 1180, 1527, 2534
DraIII	CACNNNGTG	1 cut(s)	2385
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Ecl136II	GAGCTC	4 cut(s)	66, 218, 466, 2242
Eco130I	CCWWGG	4 cut(s)	834, 1844, 1967, 2280
Eco147I	AGGCCT	1 cut(s)	83
Eco24I	GRGCYC	5 cut(s)	68, 220, 468, 727, 2244
Eco32I	GATATC	2 cut(s)	739, 2178
Eco47I	GGWCC	2 cut(s)	1961, 2312
Eco53kI	GAGCTC	4 cut(s)	66, 218, 466, 2242
Eco57I	CTGAAG	4 cut(s)	17, 1250, 1877, 2288
Eco81I	CCTNAGG	1 cut(s)	427
Eco88I	CYCGRG	4 cut(s)	308, 777, 1476, 1574
Eco91I	GGTNACC	1 cut(s)	2504
EcoICRI	GAGCTC	4 cut(s)	66, 218, 466, 2242
EcoO109I	RGGNCCY	1 cut(s)	2605
EcoO65I	GGTNACC	1 cut(s)	2504
EcoRII	CCWGG	2 cut(s)	718, 1453
EcoRV	GATATC	2 cut(s)	739, 2178
EcoT14I	CCWWGG	4 cut(s)	834, 1844, 1967, 2280
EcoT38I	GRGCYC	5 cut(s)	68, 220, 468, 727, 2244
ErhI	CCWWGG	4 cut(s)	834, 1844, 1967, 2280
Esp3I	CGTCTC	1 cut(s)	187
FalI	AAGNNNNNCTT	4 cut(s)	695, 727, 1226, 1258
FaqI	GGGAC	3 cut(s)	328, 1135, 2866
FauNDI	CATATG	1 cut(s)	2820
FblI	GTMKAC	1 cut(s)	1373
FokI	GGATG	7 cut(s)	612, 1494, 1751, 2321, 2439, 2585, 2723
FriOI	GRGCYC	5 cut(s)	68, 220, 468, 727, 2244
FspBI	CTAG	9 cut(s)	39, 269, 1137, 1805, 2048, 2112, 2264, 2766, 2859
GlaI	GCGC	1 cut(s)	1171
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	9 cut(s)	13, 83, 196, 254, 417, 1209, 1453, 1507, 2607
HapII	CCGG	4 cut(s)	974, 1575, 1890, 2758
HhaI	GCGC	1 cut(s)	1172
Hin6I	GCGC	1 cut(s)	1170
HinP1I	GCGC	1 cut(s)	1170
HincII	GTYRAC	2 cut(s)	1374, 2475
HindII	GTYRAC	2 cut(s)	1374, 2475
HindIII	AAGCTT	1 cut(s)	375
HpaII	CCGG	4 cut(s)	974, 1575, 1890, 2758
HphI	GGTGA	4 cut(s)	677, 1879, 2516, 2880
Hpy166II	GTNNAC	6 cut(s)	225, 763, 1374, 1686, 1964, 2475
Hpy8I	GTNNAC	6 cut(s)	225, 763, 1374, 1686, 1964, 2475
Hpy99I	CGWCG	1 cut(s)	2011
HpyCH4III	ACNGT	7 cut(s)	370, 423, 1126, 2038, 2134, 2401, 2701
HpyCH4IV	ACGT	3 cut(s)	453, 1213, 2320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 260, 269, 704, 1061, 1091, 2604, 2874
HpyF3I	CTNAG	8 cut(s)	50, 162, 189, 427, 673, 1180, 1527, 2534
HpySE526I	ACGT	3 cut(s)	453, 1213, 2320
HspAI	GCGC	1 cut(s)	1170
Kpn2I	TCCGGA	1 cut(s)	2757
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	5 cut(s)	215, 471, 491, 722, 1011
Lsp1109I	GCAGC	9 cut(s)	259, 394, 394, 694, 1097, 1597, 1739, 2320, 2850
LweI	GCATC	5 cut(s)	658, 1010, 1193, 1714, 2563
MaeI	CTAG	9 cut(s)	39, 269, 1137, 1805, 2048, 2112, 2264, 2766, 2859
MaeII	ACGT	3 cut(s)	453, 1213, 2320
MaeIII	GTNAC	8 cut(s)	551, 1139, 1214, 1538, 1741, 1885, 2266, 2504
MbiI	CCGCTC	1 cut(s)	2751
MboII	GAAGA	8 cut(s)	293, 950, 1353, 1891, 2008, 2297, 2477, 2647
MfeI	CAATTG	2 cut(s)	276, 411
MflI	RGATCY	3 cut(s)	838, 2517, 2738
MlyI	GAGTC	5 cut(s)	800, 1064, 1576, 1923, 2264
MroI	TCCGGA	1 cut(s)	2757
MroXI	GAANNNNTTC	1 cut(s)	1406
MseI	TTAA	9 cut(s)	288, 459, 731, 1233, 1289, 1944, 2235, 2273, 2896
MslI	CAYNNNNRTG	5 cut(s)	152, 1006, 1250, 1649, 2218
MspA1I	CMGCKG	2 cut(s)	1730, 2143
MspCI	CTTAAG	1 cut(s)	1232
MspI	CCGG	4 cut(s)	974, 1575, 1890, 2758
MspR9I	CCNGG	5 cut(s)	720, 974, 1455, 1575, 1576
MunI	CAATTG	2 cut(s)	276, 411
Mva1269I	GAATGC	3 cut(s)	1895, 2390, 2438
MvaI	CCWGG	2 cut(s)	720, 1455
MwoI	GCNNNNNNNGC	8 cut(s)	10, 260, 269, 704, 1061, 1091, 2604, 2874
NciI	CCSGG	3 cut(s)	974, 1575, 1576
NcoI	CCATGG	1 cut(s)	2280
NdeI	CATATG	1 cut(s)	2820
NlaIV	GGNNCC	3 cut(s)	144, 724, 2606
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	4 cut(s)	551, 1139, 1885, 2504
NspI	RCATGY	2 cut(s)	797, 2634
OliI	CACNNNNGTG	1 cut(s)	1250
PaeI	GCATGC	1 cut(s)	2634
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	1980
PceI	AGGCCT	1 cut(s)	83
PciI	ACATGT	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	963
PctI	GAATGC	3 cut(s)	1895, 2390, 2438
PdmI	GAANNNNTTC	1 cut(s)	1406
PfeI	GAWTC	9 cut(s)	296, 773, 902, 934, 1675, 1796, 1927, 2450, 2664
PflMI	CCANNNNNTGG	1 cut(s)	2321
PfoI	TCCNGGA	1 cut(s)	718
PinAI	ACCGGT	1 cut(s)	1889
PleI	GAGTC	5 cut(s)	800, 1064, 1575, 1922, 2263
PpsI	GAGTC	5 cut(s)	800, 1064, 1575, 1922, 2263
PscI	ACATGT	1 cut(s)	793
PshAI	GACNNNNGTC	1 cut(s)	1566
PshBI	ATTAAT	1 cut(s)	1944
Psp124BI	GAGCTC	4 cut(s)	68, 220, 468, 2244
Psp1406I	AACGTT	1 cut(s)	1213
Psp6I	CCWGG	2 cut(s)	718, 1453
PspEI	GGTNACC	1 cut(s)	2504
PspGI	CCWGG	2 cut(s)	718, 1453
PspN4I	GGNNCC	3 cut(s)	144, 724, 2606
PspPI	GGNCC	4 cut(s)	416, 1961, 2312, 2605
PsrI	GAACNNNNNNTAC	2 cut(s)	103, 135
PstI	CTGCAG	1 cut(s)	1224
PstNI	CAGNNNCTG	2 cut(s)	578, 2699
PsuI	RGATCY	3 cut(s)	838, 2517, 2738
PvuII	CAGCTG	2 cut(s)	1730, 2143
RsaI	GTAC	8 cut(s)	9, 474, 537, 701, 792, 912, 1685, 2136
RsaNI	GTAC	8 cut(s)	8, 473, 536, 700, 791, 911, 1684, 2135
RseI	CAYNNNNRTG	5 cut(s)	152, 1006, 1250, 1649, 2218
SacI	GAGCTC	4 cut(s)	68, 220, 468, 2244
SalI	GTCGAC	1 cut(s)	1372
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	9 cut(s)	288, 459, 731, 1233, 1289, 1944, 2235, 2273, 2896
Sau96I	GGNCC	4 cut(s)	416, 1961, 2312, 2605
SchI	GAGTC	5 cut(s)	800, 1064, 1576, 1923, 2264
ScrFI	CCNGG	5 cut(s)	720, 974, 1455, 1575, 1576
SfaNI	GCATC	5 cut(s)	658, 1010, 1193, 1714, 2563
SfcI	CTRYAG	4 cut(s)	69, 1220, 1464, 2659
Sfr274I	CTCGAG	1 cut(s)	308
SgrAI	CRCCGGYG	1 cut(s)	1889
SinI	GGWCC	2 cut(s)	1961, 2312
SlaI	CTCGAG	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	1576
SmiMI	CAYNNNNRTG	5 cut(s)	152, 1006, 1250, 1649, 2218
SmlI	CTYRAG	3 cut(s)	308, 1232, 1931
SmoI	CTYRAG	3 cut(s)	308, 1232, 1931
SpeI	ACTAGT	2 cut(s)	1804, 2263
SphI	GCATGC	1 cut(s)	2634
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	5 cut(s)	2252, 2424, 2622, 2680, 2749
SspI	AATATT	3 cut(s)	211, 1197, 2228
SspMI	CTAG	9 cut(s)	39, 269, 1137, 1805, 2048, 2112, 2264, 2766, 2859
SstI	GAGCTC	4 cut(s)	68, 220, 468, 2244
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	5 cut(s)	718, 972, 1453, 1573, 1574
StyI	CCWWGG	4 cut(s)	834, 1844, 1967, 2280
TaaI	ACNGT	7 cut(s)	370, 423, 1126, 2038, 2134, 2401, 2701
TaiI	ACGT	3 cut(s)	456, 1216, 2323
TaqI	TCGA	8 cut(s)	309, 1373, 2006, 2099, 2123, 2258, 2343, 2581
TatI	WGTACW	3 cut(s)	790, 1683, 2134
TauI	GCSGC	1 cut(s)	2751
TfiI	GAWTC	9 cut(s)	296, 773, 902, 934, 1675, 1796, 1927, 2450, 2664
Tru1I	TTAA	9 cut(s)	288, 459, 731, 1233, 1289, 1944, 2235, 2273, 2896
Tru9I	TTAA	9 cut(s)	288, 459, 731, 1233, 1289, 1944, 2235, 2273, 2896
TscAI	CASTG	6 cut(s)	120, 358, 862, 1179, 1515, 2137
TseFI	GTSAC	4 cut(s)	551, 1139, 1885, 2504
TseI	GCWGC	9 cut(s)	272, 382, 407, 707, 1085, 1610, 1727, 2333, 2838
Tsp45I	GTSAC	4 cut(s)	551, 1139, 1885, 2504
TspDTI	ATGAA	9 cut(s)	6, 894, 947, 1041, 1128, 1253, 2208, 2580, 2626
TspGWI	ACGGA	2 cut(s)	1946, 2167
TspMI	CCCGGG	1 cut(s)	1574
TspRI	CASTG	6 cut(s)	120, 358, 862, 1179, 1515, 2137
Van91I	CCANNNNNTGG	1 cut(s)	2321
Vha464I	CTTAAG	1 cut(s)	1232
VpaK11BI	GGWCC	2 cut(s)	1961, 2312
VspI	ATTAAT	1 cut(s)	1944
XapI	RAATTY	3 cut(s)	1285, 1357, 2411
XceI	RCATGY	2 cut(s)	797, 2634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	308
XmaI	CCCGGG	1 cut(s)	1574
XmiI	GTMKAC	1 cut(s)	1373
XmnI	GAANNNNTTC	1 cut(s)	1406
XspI	CTAG	9 cut(s)	39, 269, 1137, 1805, 2048, 2112, 2264, 2766, 2859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.