Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

2276789 .. 2277109

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGACGTTGAGGAGATTGGACCTACCAACACGAGATCTCGACGCTTACTCTGGTCAACTACTTTTAAGTATCTTATGATCTTTGTAGATAAGAAAGAAGCAGAGATAAAGCACATGCTTAAGCGAAAGACTAGTGATAGTAAGCACGAAGCTAGCCCGAGCGCTGATGGGCGGCTGCATTCCCTTCGTGAGGAAGATTTGAGCGCTGATGGGCGGCTGCATTCCCTTCGTGAGGAAGATTTGAGCGCTGATGGGCAGCTGCATTCCCTTCGTGAGGAAGATTTGAGAGGTGATGGGCGGCTGCATTCCCTTCGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

107

Amino Acids

12.24

Weight (kDa)

6.3

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	172, 214, 298
AfaI	GTAC	1 cut(s)	316
AfeI	AGCGCT	3 cut(s)	163, 205, 247
AfiI	CCNNNNNNNGG	3 cut(s)	190, 232, 274
AflII	CTTAAG	1 cut(s)	119
AhlI	ACTAGT	1 cut(s)	131
AluBI	AGCT	2 cut(s)	152, 259
AluI	AGCT	2 cut(s)	152, 259
Ama87I	CYCGRG	1 cut(s)	157
Aor51HI	AGCGCT	3 cut(s)	163, 205, 247
ApeKI	GCWGC	5 cut(s)	175, 217, 256, 259, 301
AspLEI	GCGC	3 cut(s)	164, 206, 248
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	302
AsuNHI	GCTAGC	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	31
BbvI	GCAGC	5 cut(s)	162, 204, 246, 268, 288
BccI	CCATC	4 cut(s)	161, 203, 245, 287
BcgI	CGANNNNNNTGC	7 cut(s)	167, 201, 209, 243, 251, 285, 293
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	2 cut(s)	132, 153
BfoI	RGCGCY	3 cut(s)	165, 207, 249
BfrI	CTTAAG	1 cut(s)	119
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	8 cut(s)	173, 176, 215, 218, 257, 260, 299, 302
BlsI	GCNGC	8 cut(s)	174, 177, 216, 219, 258, 261, 300, 303
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	20
BmtI	GCTAGC	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 232, 274
BseLI	CCNNNNNNNGG	3 cut(s)	190, 232, 274
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	162, 204, 246, 268, 288
BsiHKCI	CYCGRG	1 cut(s)	157
BsiWI	CGTACG	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	190, 232, 274
BsmI	GAATGC	4 cut(s)	178, 220, 262, 304
BsoBI	CYCGRG	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	35, 78
BspACI	CCGC	3 cut(s)	172, 214, 298
BspOI	GCTAGC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	119
BssMI	GATC	2 cut(s)	35, 78
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	154
BstENI	CCTNNNNNAGG	3 cut(s)	188, 230, 272
BstH2I	RGCGCY	3 cut(s)	165, 207, 249
BstHHI	GCGC	3 cut(s)	164, 206, 248
BstKTI	GATC	2 cut(s)	38, 81
BstMBI	GATC	2 cut(s)	35, 78
BstNSI	RCATGY	1 cut(s)	118
BstV1I	GCAGC	5 cut(s)	162, 204, 246, 268, 288
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	3 cut(s)	164, 206, 248
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	6 cut(s)	152, 156, 175, 217, 259, 301
CviKI_1	RGCY	6 cut(s)	152, 156, 175, 217, 259, 301
CviQI	GTAC	1 cut(s)	315
DpnI	GATC	2 cut(s)	37, 80
DpnII	GATC	2 cut(s)	35, 78
Eco47I	GGWCC	1 cut(s)	20
Eco47III	AGCGCT	3 cut(s)	163, 205, 247
Eco88I	CYCGRG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	3 cut(s)	188, 230, 272
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	77, 116
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	8 cut(s)	173, 176, 215, 218, 257, 260, 299, 302
Fsp4HI	GCNGC	8 cut(s)	173, 176, 215, 218, 257, 260, 299, 302
FspBI	CTAG	2 cut(s)	132, 153
GlaI	GCGC	3 cut(s)	163, 205, 247
GluI	GCNGC	8 cut(s)	173, 176, 215, 218, 257, 260, 299, 302
HaeII	RGCGCY	3 cut(s)	165, 207, 249
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	3 cut(s)	164, 206, 248
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	3 cut(s)	162, 204, 246
HinP1I	GCGC	3 cut(s)	162, 204, 246
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188III	TCNNGA	4 cut(s)	39, 188, 230, 272
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	4 cut(s)	194, 236, 278, 320
HpyCH4IV	ACGT	2 cut(s)	6, 317
HpyCH4V	TGCA	4 cut(s)	178, 220, 262, 304
HpySE526I	ACGT	2 cut(s)	6, 317
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	3 cut(s)	162, 204, 246
Kzo9I	GATC	2 cut(s)	35, 78
LpnPI	CCDG	1 cut(s)	37
Lsp1109I	GCAGC	5 cut(s)	162, 204, 246, 268, 288
MaeI	CTAG	2 cut(s)	132, 153
MaeII	ACGT	2 cut(s)	6, 317
MalI	GATC	2 cut(s)	37, 80
MboI	GATC	2 cut(s)	35, 78
MboII	GAAGA	3 cut(s)	206, 248, 290
MflI	RGATCY	1 cut(s)	35
MnlI	CCTC	5 cut(s)	4, 184, 226, 268, 281
MseI	TTAA	2 cut(s)	66, 120
MspA1I	CMGCKG	1 cut(s)	259
MspCI	CTTAAG	1 cut(s)	119
Mva1269I	GAATGC	4 cut(s)	178, 220, 262, 304
NdeII	GATC	2 cut(s)	35, 78
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	118
PctI	GAATGC	4 cut(s)	178, 220, 262, 304
Pfl23II	CGTACG	1 cut(s)	314
PkrI	GCNGC	8 cut(s)	174, 177, 216, 219, 258, 261, 300, 303
Ppu21I	YACGTR	1 cut(s)	318
PspLI	CGTACG	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	66, 120
SatI	GCNGC	8 cut(s)	173, 176, 215, 218, 257, 260, 299, 302
Sau3AI	GATC	2 cut(s)	35, 78
Sau96I	GGNCC	1 cut(s)	20
SetI	ASST	6 cut(s)	9, 25, 154, 261, 292, 320
SinI	GGWCC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	172, 214, 298
SspMI	CTAG	2 cut(s)	132, 153
TaiI	ACGT	2 cut(s)	9, 320
TaqI	TCGA	1 cut(s)	40
TauI	GCSGC	3 cut(s)	175, 217, 301
Tru1I	TTAA	2 cut(s)	66, 120
Tru9I	TTAA	2 cut(s)	66, 120
TseI	GCWGC	5 cut(s)	175, 217, 256, 259, 301
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	20
XagI	CCTNNNNNAGG	3 cut(s)	188, 230, 272
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	2 cut(s)	132, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.