Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

7978423 .. 7979997

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1107700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGGTATTGCTGATGAATAGGCCTACTGACCATGTATGCAAGACAAGAACACTGCTTGCATTGATCTTGTGCATGTGGGTGTCCATGCAAGTGATGGCTGGAACAGAAAATGCCACGCATTTGTCTGCAAGGCCAAGTTCTCTGAATATTGGAGCTCTGTTTACTTTCAATTCGGTTATTGGGAGGGCAGCCAAGCCGGCAATTTTAGCTGCAATTGATGATGTCAATTCTGATCAAAGCATTCTTCGCGGGACAAATTTGACCCTTATTCTCCATGACACGAATTGCAGTGGATTTCTTGGAACTGTTGAAGATTCTCCCCTTGCTATTGACATTTCCTCTGCAATCTTGAAACTTTCGGAGAGTGGAACACTTCAGAAGATTCATGAGAAATGGTTCTGCAAGATGGGTTGTCGTAGTGACAAGAATCTGGACTCCGACGAGTCTAACCAACTCCACTTGATGAGCTTCTGGGTTGATAGTCAACACTGGGGTCTATACCTATTATGTGGCGCCTTCACTCTCGCTGCGCTTGTAATCTTTCCGCTAAGAGTGATACACCAATTTGTCCGCTACAAGAAGCAGCGCGCAAACAATCTCTCTTCTTCGTTGTCATCAACCTCGTGGAGTTCTCGATGGTCTCAGGTCATGGGCAGCTTTGTTGACTTCATCACCGAGAAGGAAGAATGTACGCTCAGGGTGACAGTACTCAAGGTCATGTTAGCTGATAAATACTTGGATCATAAAAGAACAAGCTTACTTATGTTAGTTCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

261

Amino Acids

29.12

Weight (kDa)

8.16

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccII	CGCG	2 cut(s)	252, 591
AciI	CCGC	3 cut(s)	252, 548, 574
AclWI	GGATC	1 cut(s)	750
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	516
AfaI	GTAC	2 cut(s)	694, 711
AgsI	TTSAA	4 cut(s)	172, 314, 355, 776
AluBI	AGCT	6 cut(s)	158, 212, 471, 660, 728, 759
AluI	AGCT	6 cut(s)	158, 212, 471, 660, 728, 759
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	2 cut(s)	23, 134
ApeKI	GCWGC	5 cut(s)	191, 212, 530, 586, 657
ApoI	RAATTY	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	4 cut(s)	518, 535, 591, 593
AsuHPI	GGTGA	2 cut(s)	667, 715
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	199, 203, 517, 598, 669
BccI	CCATC	3 cut(s)	91, 403, 633
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	648
BfoI	RGCGCY	1 cut(s)	519
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	5 cut(s)	192, 213, 531, 587, 658
BlsI	GCNGC	5 cut(s)	193, 214, 532, 588, 659
BmcAI	AGTACT	1 cut(s)	711
BmiI	GGNNCC	1 cut(s)	517
BmrI	ACTGGG	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	698
BsaHI	GRCGYC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	648
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	659, 712
BseNI	ACTGG	1 cut(s)	497
BsePI	GCGCGC	1 cut(s)	589
BseXI	GCAGC	5 cut(s)	199, 203, 517, 598, 669
Bsh1236I	CGCG	2 cut(s)	252, 591
BshFI	GGCC	2 cut(s)	25, 136
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	648
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	25, 136
Bso31I	GGTCTC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	66, 235, 742
BspACI	CCGC	3 cut(s)	252, 548, 574
BspANI	GGCC	2 cut(s)	25, 136
BspCNI	CTCAG	2 cut(s)	658, 711
BspFNI	CGCG	2 cut(s)	252, 591
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	199
BssHII	GCGCGC	1 cut(s)	589
BssMI	GATC	3 cut(s)	66, 235, 742
BssNI	GRCGYC	1 cut(s)	516
BssSI	CACGAG	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	625
Bst4CI	ACNGT	2 cut(s)	310, 709
Bst6I	CTCTTC	1 cut(s)	610
BstACI	GRCGYC	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	60, 201, 591
BstDEI	CTNAG	3 cut(s)	551, 645, 698
BstFNI	CGCG	2 cut(s)	252, 591
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	4 cut(s)	518, 535, 591, 593
BstKTI	GATC	3 cut(s)	69, 238, 745
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	3 cut(s)	66, 235, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 209, 249
BstNSI	RCATGY	1 cut(s)	79
BstUI	CGCG	2 cut(s)	252, 591
BstV1I	GCAGC	5 cut(s)	199, 203, 517, 598, 669
BsuRI	GGCC	2 cut(s)	25, 136
BtsI	GCAGTG	2 cut(s)	53, 298
BtsIMutI	CAGTG	3 cut(s)	53, 298, 490
Cac8I	GCNNGC	3 cut(s)	60, 201, 591
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	4 cut(s)	518, 535, 591, 593
Cfr10I	RCCGGY	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	693, 710
CviAII	CATG	7 cut(s)	35, 76, 88, 278, 389, 652, 721
CviQI	GTAC	2 cut(s)	693, 710
DdeI	CTNAG	3 cut(s)	551, 645, 698
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	3 cut(s)	68, 237, 744
DpnII	GATC	3 cut(s)	66, 235, 742
Eam1104I	CTCTTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	158
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
FaeI	CATG	7 cut(s)	38, 79, 91, 281, 392, 655, 724
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	7 cut(s)	34, 75, 87, 277, 388, 651, 720
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	192, 213, 531, 587, 658
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	5 cut(s)	192, 213, 531, 587, 658
GlaI	GCGC	4 cut(s)	517, 534, 590, 592
GluI	GCNGC	5 cut(s)	192, 213, 531, 587, 658
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	25, 136
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	4 cut(s)	518, 535, 591, 593
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	7 cut(s)	38, 79, 91, 281, 392, 655, 724
Hin6I	GCGC	4 cut(s)	516, 533, 589, 591
HinP1I	GCGC	4 cut(s)	516, 533, 589, 591
HincII	GTYRAC	2 cut(s)	488, 667
HindII	GTYRAC	2 cut(s)	488, 667
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	5 cut(s)	317, 385, 430, 437, 446
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	667, 715
Hpy166II	GTNNAC	3 cut(s)	165, 488, 667
Hpy188I	TCNGA	5 cut(s)	147, 235, 364, 381, 442
Hpy188III	TCNNGA	4 cut(s)	352, 389, 434, 636
Hpy8I	GTNNAC	3 cut(s)	165, 488, 667
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	529, 676
HpyCH4III	ACNGT	2 cut(s)	310, 709
HpyCH4V	TGCA	9 cut(s)	42, 62, 75, 91, 131, 215, 291, 347, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 209, 249
HpyF3I	CTNAG	3 cut(s)	551, 645, 698
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	7 cut(s)	38, 79, 91, 281, 392, 655, 724
HspAI	GCGC	4 cut(s)	516, 533, 589, 591
KasI	GGCGCC	1 cut(s)	515
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	66, 235, 742
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	87, 213, 419, 460, 478, 632, 685
Lsp1109I	GCAGC	5 cut(s)	199, 203, 517, 598, 669
MaeIII	GTNAC	2 cut(s)	422, 703
MalI	GATC	3 cut(s)	68, 237, 744
MboI	GATC	3 cut(s)	66, 235, 742
MboII	GAAGA	6 cut(s)	239, 326, 394, 597, 600, 698
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	8 cut(s)	172, 204, 216, 229, 259, 286, 566, 776
Mly113I	GGCGCC	1 cut(s)	516
MlyI	GAGTC	2 cut(s)	431, 455
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	3 cut(s)	180, 352, 634
MroNI	GCCGGC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	398
MslI	CAYNNNNRTG	2 cut(s)	80, 92
MspI	CCGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	243
MvnI	CGCG	2 cut(s)	252, 591
MwoI	GCNNNNNNNGC	3 cut(s)	200, 209, 249
NaeI	GCCGGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	516
NdeII	GATC	3 cut(s)	66, 235, 742
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	7 cut(s)	38, 79, 91, 281, 392, 655, 724
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	422, 703
NspI	RCATGY	1 cut(s)	79
PagI	TCATGA	1 cut(s)	388
PauI	GCGCGC	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	25
PctI	GAATGC	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	317, 385, 430
PkrI	GCNGC	5 cut(s)	193, 214, 532, 588, 659
PleI	GAGTC	2 cut(s)	431, 454
PluTI	GGCGCC	1 cut(s)	519
PpsI	GAGTC	2 cut(s)	431, 454
Psp124BI	GAGCTC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	517
PteI	GCGCGC	1 cut(s)	589
RsaI	GTAC	2 cut(s)	694, 711
RsaNI	GTAC	2 cut(s)	693, 710
RseI	CAYNNNNRTG	2 cut(s)	80, 92
SacI	GAGCTC	1 cut(s)	160
SatI	GCNGC	5 cut(s)	192, 213, 531, 587, 658
Sau3AI	GATC	3 cut(s)	66, 235, 742
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	2 cut(s)	431, 455
SduI	GDGCHC	1 cut(s)	160
SfoI	GGCGCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	2 cut(s)	80, 92
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	8 cut(s)	172, 204, 216, 229, 259, 286, 566, 776
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	252, 548, 574
SspDI	GGCGCC	1 cut(s)	515
SspI	AATATT	1 cut(s)	151
SstI	GAGCTC	1 cut(s)	160
StuI	AGGCCT	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	310, 709
TaqI	TCGA	1 cut(s)	637
TasI	AATT	8 cut(s)	172, 204, 216, 229, 259, 286, 566, 776
TatI	WGTACW	1 cut(s)	709
TfiI	GAWTC	3 cut(s)	317, 385, 430
TscAI	CASTG	3 cut(s)	60, 298, 497
TseFI	GTSAC	2 cut(s)	422, 703
TseI	GCWGC	5 cut(s)	191, 212, 530, 586, 657
Tsp45I	GTSAC	2 cut(s)	422, 703
TspDTI	ATGAA	3 cut(s)	32, 377, 661
TspRI	CASTG	3 cut(s)	60, 298, 497
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.