Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397097.1

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1234

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 376 bp

atgcctgtacggccttcatcaaagctcgtccttcagcctagttcaaagctcaggaatcaacagagctctgtagaaatggaggccttcttgacccatgtatgcaagacaagaacactgcttacattgatcttatgtatttgggtgcccatggaagtgatggctcagactggaaatgcccccgtctcgtctaagaggccgagttctctgaatattggagctctgtttactttcaattcagccattggaaggtcggccaaaccagcaatcctagctgcaattgaagaagttaattctgattcaagcgttctcgaggggactaaattgaacattattttccatgatacaaattgcagtggatttcttggaactgtggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

125

Amino Acids

13.49

Weight (kDa)

8.57

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	45, 232, 281, 300, 325
AluBI	AGCT	5 cut(s)	25, 49, 66, 218, 272
AluI	AGCT	5 cut(s)	25, 49, 66, 218, 272
Alw21I	GWGCWC	2 cut(s)	68, 220
Alw26I	GTCTC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	4 cut(s)	11, 81, 194, 252
ApeKI	GCWGC	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	68, 220
Bbv12I	GWGCWC	2 cut(s)	68, 220
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	39, 269
BfmI	CTRYAG	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	64, 176
BseNI	ACTGG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	4 cut(s)	13, 83, 196, 254
BshNI	GGYRCC	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	68, 220
BsiHKCI	CYCGRG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	13, 83, 196, 254
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	3 cut(s)	68, 147, 220
Bsp143I	GATC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	4 cut(s)	13, 83, 196, 254
BspCNI	CTCAG	2 cut(s)	63, 175
BspLI	GGNNCC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	50, 162, 189
BstDSI	CCRYGG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 260, 269
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	13, 83, 196, 254
BtgI	CCRYGG	1 cut(s)	147
BtsI	GCAGTG	2 cut(s)	113, 358
BtsIMutI	CAGTG	2 cut(s)	113, 358
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	3 cut(s)	95, 148, 338
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	50, 162, 189
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	252
Ecl136II	GAGCTC	2 cut(s)	66, 218
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	83
Eco24I	GRGCYC	2 cut(s)	68, 220
Eco53kI	GAGCTC	2 cut(s)	66, 218
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	2 cut(s)	66, 218
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	68, 220
ErhI	CCWWGG	1 cut(s)	147
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	3 cut(s)	98, 151, 341
FaiI	YATR	5 cut(s)	96, 100, 133, 149, 339
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	3 cut(s)	94, 147, 337
Fnu4HI	GCNGC	1 cut(s)	273
FriOI	GRGCYC	2 cut(s)	68, 220
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	39, 269
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	13, 83, 196, 254
Hin1II	CATG	3 cut(s)	98, 151, 341
HinfI	GANTC	2 cut(s)	55, 296
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	165, 207, 295
Hpy188III	TCNNGA	3 cut(s)	52, 88, 308
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	4 cut(s)	24, 41, 94, 240
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	102, 275, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 260, 269
HpyF3I	CTNAG	3 cut(s)	50, 162, 189
Hsp92II	CATG	3 cut(s)	98, 151, 341
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	4 cut(s)	18, 37, 153, 273
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	39, 269
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	293
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	3 cut(s)	68, 147, 220
MluCI	AATT	5 cut(s)	232, 276, 289, 320, 346
MnlI	CCTC	3 cut(s)	73, 186, 304
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	10, 260, 269
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	3 cut(s)	98, 151, 341
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	55, 296
PkrI	GCNGC	1 cut(s)	274
Psp124BI	GAGCTC	2 cut(s)	68, 220
PspN4I	GGNNCC	1 cut(s)	144
PsrI	GAACNNNNNNTAC	2 cut(s)	103, 135
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	2 cut(s)	68, 220
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	126
SduI	GDGCHC	3 cut(s)	68, 147, 220
SetI	ASST	6 cut(s)	27, 51, 68, 220, 251, 274
SfcI	CTRYAG	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	5 cut(s)	232, 276, 289, 320, 346
SseBI	AGGCCT	1 cut(s)	83
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	39, 269
SstI	GAGCTC	2 cut(s)	68, 220
StuI	AGGCCT	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	309
TasI	AATT	5 cut(s)	232, 276, 289, 320, 346
TfiI	GAWTC	2 cut(s)	55, 296
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	120, 358
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	2 cut(s)	120, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	308
XspI	CTAG	2 cut(s)	39, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.