pycom15g20430

Glutamate-gated receptor that probably acts as non- selective cation channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
14619391 .. 14621212
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20430.3

Sequence Viewer

Length: 1317 bp
ATGTTCACAGGATACTCCATTGATGTTTTTACTGCTGCGTTGAACTTGTTGCCCTATGCTGTTCCATACAAACTGATTCCCTTTGGTGATGGCCATAAGAATCCAAGCGTCACTGAGCTTGTGCACAAAATCCAAACGGGTGAATACGATGGAGCAATAGGTGACATTGCAATCATCACCAACCGAACAAGGATGGCGGATTTTACCCAGCCATATATCGAATCTGGGCTAGTAGTAGTTGCACCTGTTAAACCAACATTGAATTCAAATCCTTGGGCTTTCCTGAGGCCATTTAATCCCATGATGTGGGGTGTGACGGCCGCCTTCTTTCTCATTGTTGGAACAGCTGTTTGGATTTTAGAGCACAGGCATAATGATGATTTTCGGGGGGCTCCTAAAAAACAATTTGTCACTATTCTGTGGTTTAGCTTTTCGACTTGGTTCTTTGCGCACAGAGAAAATACAGTCAGCACCCTCGGTCGCTTAGTGCTAATAGTATGGCTGTTCGTTGTTCTTATAATCAACTCAAGCTACACTGCAAGTTTGACCTCAATCCTTACAGTGCAACAGCTTTCTTCCTCCATCAAAGGCATTCACGCTTTGCTTTCAAGCAACGCTCCCATTGGCTACCAGCAAGGTTCATTTGCCCGGAATTATCTAGTTGACGAACTCAATGTTGATGAGTCCAGACTCGTTCCTCTTATCATGCCAGACGACTATGCCAAAGCCTTGAAAGCTGGTCCCCATAAAGGTGGTGTTGCTGCAGTGATTGACGAGCGTGCTTACATAGAAGTTTTCCTCTCAAGCAGATGTGATTTCAGTGTTGTAGGTCAAGAATTCACCAAAACCGGTTGGGGATTTGCTTTTGCAAGGGACTCGCCTTTAGCGGTGGACCTGTCTACTGCACTTTTGAAGCTGTCGGAGAACGGGGATCTGCAAAGGATCCATGATAAATGGCTTATGAGAACTCCTTGTGCCTCACAAGGCGCAAAGCTGCAAGTCGATAGGCTTCAACTCAGAAGCTTCTGGGGACTCTTTGTTATCTGTGGTGCAGCTTGCTTCCTTGCACTCGCTATATATTTCTGCATGATGCTGCACCAGTTCAACAAGCACAACACTGAGGAACTGGTCTCTACTGGTAGCTCCAGGTCCACGCGCGTTCAAACGTTTCTCACATTTGTTGATGAGAAGGAAGAGGAAGTGAAAAGCCGGTCGAAAAGAAGACAAATGGAGAGGACTTCAAATAGAAGCGCCAGCGAAGATGAATCGATGTATAACTCAAAAAGAAGACACCTTGATCAATCATCGTCAGTGTGA

Protein Analysis

439

Amino Acids

49.21

Weight (kDa)

8.48

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc16I TGCGCA 1 cut(s) 450
AccB7I CCANNNNNTGG 1 cut(s) 306
AccI GTMKAC 1 cut(s) 899
AccII CGCG 2 cut(s) 1156, 1158
AciI CCGC 3 cut(s) 197, 321, 887
AclI AACGTT 1 cut(s) 1166
AclWI GGATC 3 cut(s) 937, 939, 950
AcoI YGGCCR 2 cut(s) 91, 318
AcsI RAATTY 2 cut(s) 262, 836
AfiI CCNNNNNNNGG 2 cut(s) 306, 749
AgeI ACCGGT 1 cut(s) 848
AjnI CCWGG 1 cut(s) 1145
AjuI GAANNNNNNNTTGG 4 cut(s) 247, 279, 334, 366
Alw21I GWGCWC 2 cut(s) 126, 366
Alw26I GTCTC 1 cut(s) 1135
Alw44I GTGCAC 1 cut(s) 122
AlwI GGATC 3 cut(s) 937, 939, 950
AoxI GGCC 3 cut(s) 91, 287, 318
ApaLI GTGCAC 1 cut(s) 122
ApeKI GCWGC 5 cut(s) 35, 761, 994, 1052, 1093
ApoI RAATTY 2 cut(s) 262, 836
AsiGI ACCGGT 1 cut(s) 848
AspLEI GCGC 4 cut(s) 451, 989, 1158, 1253
AspS9I GGNCC 3 cut(s) 740, 892, 1149
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 5 cut(s) 98, 152, 169, 173, 832
AvaII GGWCC 3 cut(s) 740, 892, 1149
AxyI CCTNAGG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 126
BalI TGGCCA 1 cut(s) 93
BamHI GGATCC 1 cut(s) 942
BanII GRGCYC 1 cut(s) 394
BbsI GAAGAC 2 cut(s) 1228, 1294
Bbv12I GWGCWC 2 cut(s) 126, 366
BbvI GCAGC 5 cut(s) 22, 748, 981, 1064, 1080
BccI CCATC 4 cut(s) 83, 143, 187, 590
BceAI ACGGC 1 cut(s) 333
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 1 cut(s) 1147
BciVI GTATCC 1 cut(s) 5
BclI TGATCA 1 cut(s) 1297
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 1 cut(s) 1135
BfaI CTAG 2 cut(s) 230, 659
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 1254
BfuI GTATCC 1 cut(s) 5
BisI GCNGC 6 cut(s) 36, 321, 762, 995, 1053, 1094
BlsI GCNGC 6 cut(s) 37, 322, 763, 996, 1054, 1095
Bme1390I CCNGG 2 cut(s) 649, 1147
Bme18I GGWCC 3 cut(s) 740, 892, 1149
BmgT120I GGNCC 3 cut(s) 740, 892, 1149
BmiI GGNNCC 3 cut(s) 393, 742, 944
BmrFI CCNGG 2 cut(s) 649, 1147
BmsI GCATC 1 cut(s) 1080
BpiI GAAGAC 2 cut(s) 1228, 1294
BpmI CTGGAG 1 cut(s) 1129
BpuEI CTTGAG 2 cut(s) 511, 787
BpuMI CCSGG 1 cut(s) 649
Bsa29I ATCGAT 1 cut(s) 1268
BsaI GGTCTC 1 cut(s) 1135
BsaJI CCNNGG 2 cut(s) 272, 475
BsaWI WCCGGW 1 cut(s) 848
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 749
Bse118I RCCGGY 2 cut(s) 848, 1209
Bse1I ACTGG 3 cut(s) 1099, 1131, 1141
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 1147
BseCI ATCGAT 1 cut(s) 1268
BseDI CCNNGG 2 cut(s) 272, 475
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 306, 749
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 4 cut(s) 105, 275, 1030, 1110
BseNI ACTGG 3 cut(s) 1099, 1131, 1141
BseSI GKGCMC 1 cut(s) 126
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 5 cut(s) 22, 748, 981, 1064, 1080
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 3 cut(s) 888, 1071, 1079
Bsh1236I CGCG 2 cut(s) 1156, 1158
Bsh1285I CGRYCG 3 cut(s) 321, 481, 1214
BshFI GGCC 3 cut(s) 93, 289, 320
BshTI ACCGGT 1 cut(s) 848
BshVI ATCGAT 1 cut(s) 1268
BsiEI CGRYCG 3 cut(s) 321, 481, 1214
BsiHKAI GWGCWC 2 cut(s) 126, 366
BsiSI CCGG 3 cut(s) 649, 849, 1210
BslFI GGGAC 3 cut(s) 726, 887, 1044
BslI CCNNNNNNNGG 2 cut(s) 306, 749
BsmAI GTCTC 1 cut(s) 1135
BsmFI GGGAC 3 cut(s) 726, 887, 1044
BsmI GAATGC 1 cut(s) 591
BsnI GGCC 3 cut(s) 93, 289, 320
Bso31I GGTCTC 1 cut(s) 1135
Bsp1286I GDGCHC 3 cut(s) 126, 366, 394
Bsp143I GATC 3 cut(s) 931, 942, 1297
BspACI CCGC 3 cut(s) 197, 321, 887
BspANI GGCC 3 cut(s) 93, 289, 320
BspCNI CTCAG 4 cut(s) 106, 276, 1029, 1111
BspDI ATCGAT 1 cut(s) 1268
BspFNI CGCG 2 cut(s) 1156, 1158
BspLI GGNNCC 3 cut(s) 393, 742, 944
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 3 cut(s) 937, 939, 950
BspTNI GGTCTC 1 cut(s) 1135
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 2 cut(s) 848, 1209
BsrI ACTGG 3 cut(s) 1099, 1131, 1141
BssAI RCCGGY 2 cut(s) 848, 1209
BssECI CCNNGG 2 cut(s) 272, 475
BssMI GATC 3 cut(s) 931, 942, 1297
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 1147
Bst4CI ACNGT 2 cut(s) 466, 562
Bst6I CTCTTC 1 cut(s) 1188
BstC8I GCNNGC 3 cut(s) 780, 1057, 1255
BstDEI CTNAG 5 cut(s) 114, 284, 484, 1016, 1119
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 2 cut(s) 1156, 1158
BstH2I RGCGCY 1 cut(s) 1254
BstHHI GCGC 4 cut(s) 451, 989, 1158, 1253
BstKTI GATC 3 cut(s) 934, 945, 1300
BstMAI GTCTC 1 cut(s) 1135
BstMBI GATC 3 cut(s) 931, 942, 1297
BstMCI CGRYCG 3 cut(s) 321, 481, 1214
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNI CCWGG 1 cut(s) 1147
BstSCI CCNGG 2 cut(s) 647, 1145
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 126
BstUI CGCG 2 cut(s) 1156, 1158
BstV1I GCAGC 5 cut(s) 22, 748, 981, 1064, 1080
BstV2I GAAGAC 2 cut(s) 1228, 1294
BstX2I RGATCY 2 cut(s) 931, 942
BstXI CCANNNNNNTGG 1 cut(s) 752
BstYI RGATCY 2 cut(s) 931, 942
BstZI CGGCCG 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 1268
Bsu36I CCTNAGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 5
BsuRI GGCC 3 cut(s) 93, 289, 320
BsuTUI ATCGAT 1 cut(s) 1268
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 534, 771
BtsIMutI CAGTG 7 cut(s) 111, 534, 567, 771, 826, 1116, 1317
Cac8I GCNNGC 3 cut(s) 780, 1057, 1255
CfoI GCGC 4 cut(s) 451, 989, 1158, 1253
Cfr10I RCCGGY 2 cut(s) 848, 1209
Cfr13I GGNCC 3 cut(s) 740, 892, 1149
ClaI ATCGAT 1 cut(s) 1268
CseI GACGC 1 cut(s) 97
CspAI ACCGGT 1 cut(s) 848
CviAII CATG 4 cut(s) 301, 706, 947, 1087
DdeI CTNAG 5 cut(s) 114, 284, 484, 1016, 1119
DpnI GATC 3 cut(s) 933, 944, 1299
DpnII GATC 3 cut(s) 931, 942, 1297
EaeI YGGCCR 2 cut(s) 91, 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 1188
EarI CTCTTC 1 cut(s) 1188
EciI GGCGGA 1 cut(s) 212
EclXI CGGCCG 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 1135
Eco47I GGWCC 3 cut(s) 740, 892, 1149
Eco52I CGGCCG 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 284
EcoRI GAATTC 2 cut(s) 262, 836
EcoRII CCWGG 1 cut(s) 1145
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 4 cut(s) 304, 709, 950, 1090
FaqI GGGAC 3 cut(s) 726, 887, 1044
FatI CATG 4 cut(s) 300, 705, 946, 1086
FbaI TGATCA 1 cut(s) 1297
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 6 cut(s) 36, 321, 762, 995, 1053, 1094
FokI GGATG 1 cut(s) 205
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 6 cut(s) 36, 321, 762, 995, 1053, 1094
FspBI CTAG 2 cut(s) 230, 659
FspI TGCGCA 1 cut(s) 450
GlaI GCGC 4 cut(s) 450, 988, 1157, 1252
GluI GCNGC 6 cut(s) 36, 321, 762, 995, 1053, 1094
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 1129
HaeII RGCGCY 1 cut(s) 1254
HaeIII GGCC 3 cut(s) 93, 289, 320
HapII CCGG 3 cut(s) 649, 849, 1210
HgaI GACGC 1 cut(s) 97
HhaI GCGC 4 cut(s) 451, 989, 1158, 1253
Hin1II CATG 4 cut(s) 304, 709, 950, 1090
Hin6I GCGC 4 cut(s) 449, 987, 1156, 1251
HinP1I GCGC 4 cut(s) 449, 987, 1156, 1251
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 1021
HinfI GANTC 8 cut(s) 76, 100, 221, 683, 690, 875, 1032, 1265
HpaII CCGG 3 cut(s) 649, 849, 1210
HphI GGTGA 5 cut(s) 98, 152, 169, 173, 832
Hpy166II GTNNAC 6 cut(s) 6, 124, 664, 892, 900, 1152
Hpy188I TCNGA 2 cut(s) 922, 1019
Hpy188III TCNNGA 3 cut(s) 283, 687, 833
Hpy8I GTNNAC 6 cut(s) 6, 124, 664, 892, 900, 1152
HpyAV CCTTC 2 cut(s) 334, 1183
HpyCH4III ACNGT 2 cut(s) 466, 562
HpyCH4IV ACGT 1 cut(s) 1166
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 5 cut(s) 114, 284, 484, 1016, 1119
HpySE526I ACGT 1 cut(s) 1166
Hsp92II CATG 4 cut(s) 304, 709, 950, 1090
HspAI GCGC 4 cut(s) 449, 987, 1156, 1251
Ksp22I TGATCA 1 cut(s) 1297
Kzo9I GATC 3 cut(s) 931, 942, 1297
LmnI GCTCC 4 cut(s) 152, 397, 622, 1148
Lsp1109I GCAGC 5 cut(s) 22, 748, 981, 1064, 1080
LweI GCATC 1 cut(s) 1080
MaeI CTAG 2 cut(s) 230, 659
MaeII ACGT 1 cut(s) 1166
MaeIII GTNAC 4 cut(s) 109, 161, 313, 409
MalI GATC 3 cut(s) 933, 944, 1299
MboI GATC 3 cut(s) 931, 942, 1297
MboII GAAGA 5 cut(s) 567, 1205, 1233, 1271, 1299
MflI RGATCY 2 cut(s) 931, 942
MhlI GDGCHC 3 cut(s) 126, 366, 394
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 4 cut(s) 262, 404, 652, 836
MluNI TGGCCA 1 cut(s) 93
MlyI GAGTC 4 cut(s) 684, 692, 869, 1026
MmeI TCCRAC 2 cut(s) 319, 900
Mox20I TGGCCA 1 cut(s) 93
MscI TGGCCA 1 cut(s) 93
MseI TTAA 2 cut(s) 249, 294
MslI CAYNNNNRTG 2 cut(s) 375, 750
Msp20I TGGCCA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 3 cut(s) 649, 849, 1210
MspR9I CCNGG 2 cut(s) 649, 1147
Mva1269I GAATGC 1 cut(s) 591
MvaI CCWGG 1 cut(s) 1147
MvnI CGCG 2 cut(s) 1156, 1158
MwoI GCNNNNNNNGC 1 cut(s) 734
NciI CCSGG 1 cut(s) 649
NdeII GATC 3 cut(s) 931, 942, 1297
NlaIII CATG 4 cut(s) 304, 709, 950, 1090
NlaIV GGNNCC 3 cut(s) 393, 742, 944
NmuCI GTSAC 4 cut(s) 109, 161, 313, 409
NsbI TGCGCA 1 cut(s) 450
PctI GAATGC 1 cut(s) 591
PfeI GAWTC 4 cut(s) 76, 100, 221, 1265
PflMI CCANNNNNTGG 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 848
PkrI GCNGC 6 cut(s) 37, 322, 763, 996, 1054, 1095
PleI GAGTC 4 cut(s) 684, 691, 869, 1026
PpsI GAGTC 4 cut(s) 684, 691, 869, 1026
PsiI TTATAA 1 cut(s) 518
Psp1406I AACGTT 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 1145
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 1145
PspN4I GGNNCC 3 cut(s) 393, 742, 944
PspPI GGNCC 3 cut(s) 740, 892, 1149
PstI CTGCAG 1 cut(s) 766
PsuI RGATCY 2 cut(s) 931, 942
PvuII CAGCTG 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 375, 750
SaqAI TTAA 2 cut(s) 249, 294
SatI GCNGC 6 cut(s) 36, 321, 762, 995, 1053, 1094
Sau3AI GATC 3 cut(s) 931, 942, 1297
Sau96I GGNCC 3 cut(s) 740, 892, 1149
SchI GAGTC 4 cut(s) 684, 692, 869, 1026
ScrFI CCNGG 2 cut(s) 649, 1147
SduI GDGCHC 3 cut(s) 126, 366, 394
SfaNI GCATC 1 cut(s) 1080
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 3 cut(s) 740, 892, 1149
SmiMI CAYNNNNRTG 2 cut(s) 375, 750
SmlI CTYRAG 2 cut(s) 526, 802
SmoI CTYRAG 2 cut(s) 526, 802
Sse9I AATT 4 cut(s) 262, 404, 652, 836
SsiI CCGC 3 cut(s) 197, 321, 887
SspMI CTAG 2 cut(s) 230, 659
StyD4I CCNGG 2 cut(s) 647, 1145
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 466, 562
TaiI ACGT 1 cut(s) 1169
TaqI TCGA 5 cut(s) 219, 434, 1002, 1214, 1268
TaqII GACCGA 1 cut(s) 467
TasI AATT 4 cut(s) 262, 404, 652, 836
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 4 cut(s) 76, 100, 221, 1265
Tru1I TTAA 2 cut(s) 249, 294
Tru9I TTAA 2 cut(s) 249, 294
TscAI CASTG 7 cut(s) 118, 541, 567, 771, 826, 1123, 1317
TseFI GTSAC 4 cut(s) 109, 161, 313, 409
TseI GCWGC 5 cut(s) 35, 761, 994, 1052, 1093
Tsp45I GTSAC 4 cut(s) 109, 161, 313, 409
TspDTI ATGAA 2 cut(s) 630, 1278
TspRI CASTG 7 cut(s) 118, 541, 567, 771, 826, 1123, 1317
Van91I CCANNNNNTGG 1 cut(s) 306
VneI GTGCAC 1 cut(s) 122
VpaK11BI GGWCC 3 cut(s) 740, 892, 1149
XapI RAATTY 2 cut(s) 262, 836
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 2 cut(s) 230, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.