Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001061

Physical Location & Seq

Genomic Coordinates Forward (+)

60828242 .. 60831078

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0477000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCAAATGAAAAGAAAAGCCCTTACCTGCAGTACGACCCTTTCGATTACAACCCCCACGAAATCGACAGGTCAAGCTTTCCATTCTTCAATTATGGCTCTAATTCTTCCATATACAATATTCCCCAAACACCAGCAGACCCCCAAACTCAAAACCTACATGGTTTTGAATCCGATCCTTCATATTTGATGAGCTTCGCCGACTGCTTAAATGGGTCAGTGGACTACACCACCCTCTCAAAAGCCTTTGACATTTCATGTTCATCATCTGAAGTCATTTCTCCGCCGCTGTTAGATCAGGACGATAATTCGAATACCAAGGCTGTAGCCGCTGGTGTAGGAGATCAAAACCCATCCACACCGAATTCATCGTTATCTTGTTCATCTAATGAAGCTGGTGCGGCTAATCATGAGCATGGAAATGATCAAGATTCAGATAAGATCAGCAAGAAAGATAAGCATCCAAAGGTAGTACAGTCTGAAGAAGCTCCTGGAGATCATGAAGACAAGTCAAAGAAAGTGAACAAAGCAAAAAAGAAAGAGAAACGGCAAAGGGAACCGCGGTTCGCCTTCTTGACCAAGAGCGAAATTGATCACCTTGAAGATGGATACAGATGGAGAAAGTACGGACAGAAGGCAGTCAAGAATAGCCCTTATCCTAGAAGTTATTATAGATGCACTACTCAGAAGTGCCTTGTAAAGAAACGTGTGGAGAGATCGTTCCAAGATCCAACGATTGTGATCACAACATATGAAGGGCAGCACAACCATCAATGTCCAGCCACACTTCGAGGCAGTATCAATGCTGTTGGCATGTTGACACCTTCCTTTTTGGCATCAGCTGCATCGAGAGGATTCGGGACTAGTAACAACGAATCCCCGAGATTTCCACACGAATTATTGTTAACTCAACTGCTTACTCCAGTCAATAACAACCAACTTCAACTGCAAGCTCATCATCATCATGATCCAGCAAGTTCCATGTTATACTCAAATCTCATGTGTACTCTTCACCAGAATCAACAGCAGCAGCAGCAGCTACATGTTCCTCATGACTATAATATGTTGCAAGATTTAGCTCCCTCATTTAGTCACAAGGAGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

369

Amino Acids

41.55

Weight (kDa)

6.65

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	201 - 258	6.3e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT1G05200 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390 AT2G32390
fragaria_vesca	FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291 FvH4_6g43291
malus_domestica	MD09G1069900.v1.1 MD09G1070100.v1.1 MD09G1107700.v1.1 MD09G1108100.v1.1 MD17G1096100.v1.1
prunus_persica	Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1 Prupe.3G217900_v2.0.a1
pyrus_communis	pycom09g03000 pycom09g03030 pycom09g03050 pycom09g03070 pycom15g20430 pycom17g09220
rosa_chinensis	RchiOBHm_Chr1g0324131 RchiOBHm_Chr2g0159571 RchiOBHm_Chr2g0159581
rosa_laevigata	RLG00000021167
rosa_multiflora	Rmu_co8397097.1_g000001 Rmu_sc0004966.1_g000017 Rmu_sc0020031.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090390
rosa_rugosa	Rorug02G0476900 Rorug02G0477000 Rorug02G0477100 Rorug02G0477200
rosa_samantha	Rh2AG544200 Rh2BG557000 Rh2CG527200 Rh2DG566000
rosa_wichuraiana	Rw2G044990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccII	CGCG	1 cut(s)	562
AciI	CCGC	6 cut(s)	284, 287, 330, 401, 560, 562
AclWI	GGATC	3 cut(s)	170, 722, 962
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	2 cut(s)	291, 501
AfaI	GTAC	4 cut(s)	35, 474, 626, 1006
AflIII	ACRYGT	2 cut(s)	706, 1042
AgsI	TTSAA	4 cut(s)	91, 170, 602, 944
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	1 cut(s)	490
AloI	GAACNNNNNNTCC	4 cut(s)	548, 580, 704, 736
AluBI	AGCT	8 cut(s)	78, 195, 395, 488, 842, 953, 1039, 1079
AluI	AGCT	8 cut(s)	78, 195, 395, 488, 842, 953, 1039, 1079
AlwI	GGATC	3 cut(s)	170, 722, 962
Ama87I	CYCGRG	1 cut(s)	880
ApeKI	GCWGC	6 cut(s)	760, 842, 1027, 1030, 1033, 1036
ApoI	RAATTY	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	587, 1004
AsuII	TTCGAA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	6 cut(s)	772, 829, 1039, 1042, 1045, 1048
BccI	CCATC	4 cut(s)	361, 599, 609, 777
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	602
BclI	TGATCA	3 cut(s)	424, 592, 741
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	2 cut(s)	660, 864
BfmI	CTRYAG	2 cut(s)	29, 324
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	9 cut(s)	287, 330, 402, 761, 843, 1028, 1031, 1034, 1037
BlsI	GCNGC	9 cut(s)	288, 331, 403, 762, 844, 1029, 1032, 1035, 1038
Bme1390I	CCNGG	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	880
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	4 cut(s)	469, 665, 845, 854
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	513, 906
Bpu14I	TTCGAA	1 cut(s)	311
BsaBI	GATNNNNATC	2 cut(s)	459, 740
BsaJI	CCNNGG	2 cut(s)	318, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bse1I	ACTGG	1 cut(s)	923
Bse8I	GATNNNNATC	2 cut(s)	459, 740
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	318, 560
BseGI	GGATG	2 cut(s)	353, 460
BseJI	GATNNNNATC	2 cut(s)	459, 740
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	923
BseXI	GCAGC	6 cut(s)	772, 829, 1039, 1042, 1045, 1048
Bsh1236I	CGCG	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	880
BslFI	GGGAC	1 cut(s)	874
BsmFI	GGGAC	1 cut(s)	874
BsoBI	CYCGRG	1 cut(s)	880
Bsp119I	TTCGAA	1 cut(s)	311
BspACI	CCGC	6 cut(s)	284, 287, 330, 401, 560, 562
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	562
BspHI	TCATGA	4 cut(s)	409, 499, 964, 1051
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	3 cut(s)	170, 722, 962
BspT104I	TTCGAA	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	923
BssECI	CCNNGG	2 cut(s)	318, 560
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	1014
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	951
BstDEI	CTNAG	1 cut(s)	684
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	353, 460
BstFNI	CGCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	5 cut(s)	329, 401, 842, 1033, 1036
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	2 cut(s)	817, 1046
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	2 cut(s)	29, 324
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	6 cut(s)	772, 829, 1039, 1042, 1045, 1048
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	353, 460
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	951
CciI	TCATGA	4 cut(s)	409, 499, 964, 1051
Cfr42I	CCGCGG	1 cut(s)	563
Csp6I	GTAC	4 cut(s)	34, 473, 625, 1005
CviQI	GTAC	4 cut(s)	34, 473, 625, 1005
DdeI	CTNAG	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	291, 501
Eco88I	CYCGRG	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaqI	GGGAC	1 cut(s)	874
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	3 cut(s)	424, 592, 741
Fnu4HI	GCNGC	9 cut(s)	287, 330, 402, 761, 843, 1028, 1031, 1034, 1037
FokI	GGATG	2 cut(s)	340, 447
Fsp4HI	GCNGC	9 cut(s)	287, 330, 402, 761, 843, 1028, 1031, 1034, 1037
FspBI	CTAG	2 cut(s)	660, 864
GluI	GCNGC	9 cut(s)	287, 330, 402, 761, 843, 1028, 1031, 1034, 1037
GsuI	CTGGAG	2 cut(s)	513, 906
HincII	GTYRAC	2 cut(s)	819, 906
HindII	GTYRAC	2 cut(s)	819, 906
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	5 cut(s)	170, 431, 855, 875, 1018
HpaI	GTTAAC	1 cut(s)	906
HphI	GGTGA	2 cut(s)	587, 1004
Hpy166II	GTNNAC	5 cut(s)	223, 523, 819, 906, 1005
Hpy188I	TCNGA	5 cut(s)	175, 271, 436, 481, 687
Hpy8I	GTNNAC	5 cut(s)	223, 523, 819, 906, 1005
HpyAV	CCTTC	5 cut(s)	189, 580, 628, 749, 834
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	31, 678, 845, 949, 1069
HpyF10VI	GCNNNNNNNGC	5 cut(s)	329, 401, 842, 1033, 1036
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	1 cut(s)	706
Ksp22I	TGATCA	3 cut(s)	424, 592, 741
KspAI	GTTAAC	1 cut(s)	906
KspI	CCGCGG	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	493, 1084
Lsp1109I	GCAGC	6 cut(s)	772, 829, 1039, 1042, 1045, 1048
LweI	GCATC	4 cut(s)	469, 665, 845, 854
MaeI	CTAG	2 cut(s)	660, 864
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	2 cut(s)	866, 1091
MboII	GAAGA	6 cut(s)	79, 99, 494, 515, 614, 1001
MflI	RGATCY	1 cut(s)	727
MluCI	AATT	6 cut(s)	91, 103, 307, 364, 588, 896
MmeI	TCCRAC	1 cut(s)	755
MnlI	CCTC	5 cut(s)	245, 785, 845, 1059, 1093
MseI	TTAA	2 cut(s)	209, 905
MslI	CAYNNNNRTG	3 cut(s)	414, 420, 963
MspA1I	CMGCKG	4 cut(s)	289, 332, 562, 842
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	5 cut(s)	329, 401, 842, 1033, 1036
NdeI	CATATG	1 cut(s)	751
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	1091
NspI	RCATGY	2 cut(s)	817, 1046
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	4 cut(s)	409, 499, 964, 1051
PciI	ACATGT	1 cut(s)	1042
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	5 cut(s)	170, 431, 855, 875, 1018
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	9 cut(s)	288, 331, 403, 762, 844, 1029, 1032, 1035, 1038
PscI	ACATGT	1 cut(s)	1042
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	4 cut(s)	35, 474, 626, 1006
RsaNI	GTAC	4 cut(s)	34, 473, 625, 1005
RseI	CAYNNNNRTG	3 cut(s)	414, 420, 963
SacII	CCGCGG	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	209, 905
SatI	GCNGC	9 cut(s)	287, 330, 402, 761, 843, 1028, 1031, 1034, 1037
ScrFI	CCNGG	1 cut(s)	492
SfaNI	GCATC	4 cut(s)	469, 665, 845, 854
SfcI	CTRYAG	2 cut(s)	29, 324
Sfr303I	CCGCGG	1 cut(s)	563
SfuI	TTCGAA	1 cut(s)	311
SgrBI	CCGCGG	1 cut(s)	563
SmiMI	CAYNNNNRTG	3 cut(s)	414, 420, 963
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	6 cut(s)	91, 103, 307, 364, 588, 896
SsiI	CCGC	6 cut(s)	284, 287, 330, 401, 560, 562
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	660, 864
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	5 cut(s)	45, 66, 311, 790, 848
TasI	AATT	6 cut(s)	91, 103, 307, 364, 588, 896
TatI	WGTACW	2 cut(s)	472, 1004
TauI	GCSGC	3 cut(s)	289, 332, 404
TfiI	GAWTC	5 cut(s)	170, 431, 855, 875, 1018
Tru1I	TTAA	2 cut(s)	209, 905
Tru9I	TTAA	2 cut(s)	209, 905
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	1091
TseI	GCWGC	6 cut(s)	760, 842, 1027, 1030, 1033, 1036
Tsp45I	GTSAC	1 cut(s)	1091
TspDTI	ATGAA	9 cut(s)	24, 171, 246, 252, 357, 372, 405, 516, 768
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	2 cut(s)	817, 1046
XspI	CTAG	2 cut(s)	660, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.