Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006374

Physical Location & Seq

Genomic Coordinates Reverse (-)

2289296 .. 2291112

Gene Structure 1817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGTTTTAGAAAAGTTCGAGACTTTACTGTGAGGAATTGCTGCAGAGGGAAAAAAAAAATGAGGGGTGCTGTAGTTTTGCCACTGCAATTTCTGATATGGGTTTTCCTCACTAGCTGTTTTTACTGCCAGAAGCCTTCTGTGGTGAACATTGGAGCAATTTTTAGTTTTAACTCGGTTATTGGTAGAGTTGCAAAGACAGCCATGGAAGCTGCACTCTCTGATGTTAATACAGATCCAAGAATACTCAGTGGGACGGAGCTGAGGTGGCTTATGGAGAATACAAATTCTAGTGTGTTCTTGGGATCCGTTGAAGTTTTTCAGGTGCTTGACAAAAGTATAGAAGCCATAATCGGACCACAGACCTCTTCAATGGCTCATATGATCACTGAAATTGCTAATGGTCTCCGAGTACCTCTTATCTCATATGCTGCCACTGATCCTACTCTTTCTGCTCTCCAATTCCCATTCTTTCTCCGAACTACACAAAGCAATGCTCACCAAATGGCTGCTATGGCTGGCTTGATTGATTTTTATGGGTGGAAAGAGGTTATTGTTGTCTTTGTGGATGACGATTATGGGAGGAATGGAATATCTGCTTTACATGATGAACTTGACAAAACAATGCCAAGGATTTCTCATAACTTGGCTTTGCCTGTCCAATATAATTTAAATGACATTGCTGATTTGCTCAATAAACTCAGATTTCTTGGCCGTCGTGTCTATATTGTTCATGTTGATCGATCCGATCCTAGGTTGAGAATCTTTACTGTCGCCAAAGAACTTCTTATGATGACAAGCATTTATGTGTGGTTTGCAACAGATTGGCTTTCTACTACAGTAGATTCATTCTCTCCAATGAACCGAACTTCACTCACTGCCCTTCAAGGTGTAGTTACTTTACGTAAGCATATTCCAGAGTCCAGTCGAAAGCGTGCATTTATGTCTAGGTGGAAAAAAATGCAGCAAGACGGTTTAGCAAGTTCCGAGTTAAATGTCTATGGACTTTATGCTTATGACACAGTTTGGGCTGTTGCACACTCGATTGAAAATTTTATGAATGAAAACAGAAATATCTCATTCTCTGTCCTTGATAAATTACTTGACATGAGACAATCTCAAATTCAGCTGGGCAACCTTATGATGTGTTCAATGAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009506 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0030054 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

388

Amino Acids

43.91

Weight (kDa)

9.22

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	51 - 344	5.1e-10	Periplasmic binding protein
ANF_receptor	PF01094	65 - 368	8.1e-72	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32400
fragaria_vesca	FvH4_6g43290 FvH4_6g43290 FvH4_6g43290 FvH4_6g43290
malus_domestica	MD09G1070000.v1.1 MD09G1108300.v1.1 MD17G1096200.v1.1
prunus_persica	Prupe.3G217800_v2.0.a1 Prupe.3G217800_v2.0.a1 Prupe.3G217800_v2.0.a1
pyrus_communis	pycom09g03020 pycom09g03080 pycom17g09230
rosa_chinensis	RchiOBHm_Chr2g0159561
rosa_laevigata	RLG00000021166
rosa_multiflora	Rmu_sc0012414.1_g000014 Rmu_sc0012414.1_g000015
rosa_roxburghii	Rroxscaffold_2G00090400
rosa_rugosa	Rorug02G0476900 Rorug02G0476900
rosa_samantha	Rh2AG543800 Rh2AG544100 Rh2BG556900 Rh2CG527100 Rh2DG565900
rosa_wichuraiana	Rw2G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	230, 300, 313, 434, 738, 743
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	3 cut(s)	286, 1051, 1122
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	753
AgsI	TTSAA	5 cut(s)	314, 372, 887, 1049, 1152
AluBI	AGCT	4 cut(s)	117, 212, 262, 1129
AluI	AGCT	4 cut(s)	117, 212, 262, 1129
Alw26I	GTCTC	3 cut(s)	15, 410, 1105
AlwI	GGATC	6 cut(s)	230, 300, 313, 434, 738, 743
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	5 cut(s)	42, 212, 431, 509, 964
ApoI	RAATTY	3 cut(s)	286, 1051, 1122
Asp700I	GAANNNNTTC	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	157, 491
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	752
BamHI	GGATCC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	263
BbvI	GCAGC	5 cut(s)	29, 199, 418, 496, 976
BceAI	ACGGC	1 cut(s)	699
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	15, 410, 1105
BfaI	CTAG	4 cut(s)	114, 291, 753, 948
BfmI	CTRYAG	3 cut(s)	43, 72, 837
BisI	GCNGC	5 cut(s)	43, 213, 432, 510, 965
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	5 cut(s)	44, 214, 433, 511, 966
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	1102, 1134
Bpu10I	CCTNAGC	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	742
BsaAI	YACGTR	1 cut(s)	905
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	204, 629, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	753
Bse1I	ACTGG	1 cut(s)	924
Bse3DI	GCAATG	2 cut(s)	499, 678
BseCI	ATCGAT	1 cut(s)	742
BseDI	CCNNGG	3 cut(s)	204, 629, 752
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	753
BseMI	GCAATG	2 cut(s)	499, 678
BseMII	CTCAG	3 cut(s)	254, 262, 715
BseNI	ACTGG	1 cut(s)	924
BseXI	GCAGC	5 cut(s)	29, 199, 418, 496, 976
BseYI	CCCAGC	1 cut(s)	1129
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	714
BshVI	ATCGAT	1 cut(s)	742
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	753
BsmAI	GTCTC	3 cut(s)	15, 410, 1105
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	714
Bso31I	GGTCTC	1 cut(s)	410
Bsp143I	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
Bsp19I	CCATGG	1 cut(s)	204
BspANI	GGCC	1 cut(s)	714
BspCNI	CTCAG	3 cut(s)	255, 261, 714
BspDI	ATCGAT	1 cut(s)	742
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	47
BspPI	GGATC	6 cut(s)	230, 300, 313, 434, 738, 743
BspTNI	GGTCTC	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	499, 678
BsrI	ACTGG	1 cut(s)	924
BssECI	CCNNGG	3 cut(s)	204, 629, 752
BssMI	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
BssT1I	CCWWGG	3 cut(s)	204, 629, 752
Bst4CI	ACNGT	5 cut(s)	31, 772, 841, 974, 1024
Bst6I	CTCTTC	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	520, 936
BstDEI	CTNAG	3 cut(s)	248, 263, 701
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	574
BstKTI	GATC	7 cut(s)	238, 308, 387, 442, 742, 746, 751
BstMAI	GTCTC	3 cut(s)	15, 410, 1105
BstMBI	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 209, 268, 515
BstSFI	CTRYAG	3 cut(s)	43, 72, 837
BstSNI	TACGTA	1 cut(s)	905
BstV1I	GCAGC	5 cut(s)	29, 199, 418, 496, 976
BstX2I	RGATCY	2 cut(s)	235, 305
BstYI	RGATCY	2 cut(s)	235, 305
Bsu15I	ATCGAT	1 cut(s)	742
BsuRI	GGCC	1 cut(s)	714
BsuTUI	ATCGAT	1 cut(s)	742
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	574
BtsI	GCAGTG	2 cut(s)	83, 876
BtsIMutI	CAGTG	6 cut(s)	83, 256, 387, 435, 876, 1159
Cac8I	GCNNGC	2 cut(s)	520, 936
Cfr13I	GGNCC	1 cut(s)	356
ClaI	ATCGAT	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	4 cut(s)	205, 605, 734, 1108
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	3 cut(s)	248, 263, 701
DpnI	GATC	7 cut(s)	237, 307, 386, 441, 741, 745, 750
DpnII	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Eco105I	TACGTA	1 cut(s)	905
Eco130I	CCWWGG	3 cut(s)	204, 629, 752
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	356
EcoT14I	CCWWGG	3 cut(s)	204, 629, 752
ErhI	CCWWGG	3 cut(s)	204, 629, 752
FaeI	CATG	4 cut(s)	208, 608, 737, 1111
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	4 cut(s)	204, 604, 733, 1107
FauNDI	CATATG	2 cut(s)	381, 427
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	43, 213, 432, 510, 965
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	5 cut(s)	43, 213, 432, 510, 965
FspBI	CTAG	4 cut(s)	114, 291, 753, 948
GluI	GCNGC	5 cut(s)	43, 213, 432, 510, 965
GsaI	CCCAGC	1 cut(s)	1133
HaeIII	GGCC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	208, 608, 737, 1111
HinfI	GANTC	3 cut(s)	762, 845, 920
HphI	GGTGA	2 cut(s)	157, 491
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	8 cut(s)	96, 223, 356, 410, 479, 704, 748, 988
Hpy188III	TCNNGA	2 cut(s)	20, 917
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	720
HpyAV	CCTTC	2 cut(s)	147, 893
HpyCH4III	ACNGT	5 cut(s)	31, 772, 841, 974, 1024
HpyCH4IV	ACGT	1 cut(s)	904
HpyCH4V	TGCA	8 cut(s)	45, 88, 194, 215, 818, 938, 964, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 209, 268, 515
HpyF3I	CTNAG	3 cut(s)	248, 263, 701
HpySE526I	ACGT	1 cut(s)	904
Hsp92II	CATG	4 cut(s)	208, 608, 737, 1111
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
LmnI	GCTCC	2 cut(s)	155, 259
LpnPI	CCDG	7 cut(s)	143, 308, 504, 669, 930, 937, 1115
Lsp1109I	GCAGC	5 cut(s)	29, 199, 418, 496, 976
MaeI	CTAG	4 cut(s)	114, 291, 753, 948
MaeII	ACGT	1 cut(s)	904
MaeIII	GTNAC	1 cut(s)	895
MalI	GATC	7 cut(s)	237, 307, 386, 441, 741, 745, 750
MboI	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
MboII	GAAGA	1 cut(s)	360
MflI	RGATCY	2 cut(s)	235, 305
MlyI	GAGTC	1 cut(s)	929
MnlI	CCTC	9 cut(s)	27, 41, 57, 119, 258, 376, 426, 541, 576
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	4 cut(s)	171, 228, 671, 992
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	4 cut(s)	200, 209, 268, 515
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	2 cut(s)	381, 427
NdeII	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
NlaIII	CATG	4 cut(s)	208, 608, 737, 1111
NlaIV	GGNNCC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	762, 845
PkrI	GCNGC	5 cut(s)	44, 214, 433, 511, 966
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
Ppu21I	YACGTR	1 cut(s)	905
PspFI	CCCAGC	1 cut(s)	1129
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	235, 305
PvuII	CAGCTG	1 cut(s)	1129
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	4 cut(s)	171, 228, 671, 992
SatI	GCNGC	5 cut(s)	43, 213, 432, 510, 965
Sau3AI	GATC	7 cut(s)	235, 305, 384, 439, 739, 743, 748
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	929
SfcI	CTRYAG	3 cut(s)	43, 72, 837
SinI	GGWCC	1 cut(s)	356
SmiI	ATTTAAAT	1 cut(s)	672
SmiMI	CAYNNNNRTG	1 cut(s)	806
SnaBI	TACGTA	1 cut(s)	905
SspMI	CTAG	4 cut(s)	114, 291, 753, 948
StyI	CCWWGG	3 cut(s)	204, 629, 752
SwaI	ATTTAAAT	1 cut(s)	672
TaaI	ACNGT	5 cut(s)	31, 772, 841, 974, 1024
TaiI	ACGT	1 cut(s)	907
TaqI	TCGA	4 cut(s)	19, 742, 928, 1043
TfiI	GAWTC	2 cut(s)	762, 845
Tru1I	TTAA	4 cut(s)	171, 228, 671, 992
Tru9I	TTAA	4 cut(s)	171, 228, 671, 992
TscAI	CASTG	5 cut(s)	90, 256, 394, 442, 883
TseI	GCWGC	5 cut(s)	42, 212, 431, 509, 964
TspDTI	ATGAA	6 cut(s)	624, 722, 837, 875, 1073, 1077
TspGWI	ACGGA	2 cut(s)	272, 298
TspRI	CASTG	5 cut(s)	90, 256, 394, 442, 883
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	286, 1051, 1122
XmaJI	CCTAGG	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	4 cut(s)	114, 291, 753, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.