Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006484

Physical Location & Seq

Genomic Coordinates Forward (+)

10844585 .. 10849702

Gene Structure 5118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1139600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGGATAGAAATCAAAATTCGGGTGAAACAGTGGTGGATGGTCCAGAAAAGATGAGTGTTGGTGCAGTAAATGAAAATATGAATATGGTTGCTGTTGCGGAAGAAGTGCAGAATAGAGGTGGCGGGGTCATTACTTCTCCTGAGAAGGATGTTCAAGTGTTTGAGGGTGAAGCAGATTTTGAACCTTGTAATGGCATTGAATTTGAATCGCACGAGGCAGCATACTCATTTTATCAAGAATATGCCAAGTCTATGGGATTCACCACTTCAATCAAAAACAGCCGGCGCTCAAAGAAATCAAAGGAATTTATTGATGCCAAATTTGCATGTTCAAGATATGGAGTCACTCCAGAATCAGATAGTGGGACTAGTCGTCGACCAACTGTGAAAAAGACAGATTGCAAAGCCAGCATGCATGTGAAGAGAAGGGCAGATGGAAAGTGGATTATTCATGAATTCATAAAGGAGCATAATCATGAGCTTTTACCTGCTCTGGCATATCATTTTCGGATTCATAGGAATGTAAAGTTAGCTGAAAAGAATAATGTTGACATTTTGCATGCAGTTAGTGAACGGACAAGAAAGATGTATGTTGAAATGTCTAGACACTCTGGTGGGTACCAAAGTACTGGGTTTCCTCGGGCTGACACAAACTATCAGTTTGATAAGTGCCGGGACTTGAGTCTAGATTTGGGAGATGCTCAGGTAATGCTTGAATACTTTAAGCGTATCCAGAAGGAGAATCCTAACTTCTTCTATGCTATAGATTTGAATGAAGAGCGACGTCTGAGAAATTTGTTTTGGGTTGATGCAAAAAGTCGGAGTGATTACAAGAGTTTTAATGATGTTGTCTCTTTTGATACTTCTTATATCAAAATAAACGATAAGTTGCCAATTGCTCCTTTTGTTGGGGTGAACAACCACTTTCAGTCAATGTTGCTTGGTTGTGCATTGGTTGCTGATGATACAAAATCAACATTTGTATGGTTGTTGAAGACATGGCTTAGAGCAATGGGTGGGCAAGGTCCTAAAGTGATTATCACTGATCAAGACCAAACCCTGAAGGCAGCGATTGGCGAAGTCTTTCCAGATGCACGTCACTGCTTTTCACTTTGGAGTGTACTGGAAAAGATCCCTGAAACTCTTGCTCATGTAATCAAACGGCACGACAATTTCTTGTCTAAGTTTAACGAATGCATTTTCAAGTCCTCGACAGATGAACAGTTTGTCTTTAGATGGTGGGAGATGGTTAACAGTTTTGAACTTCAAGATGATGAATGGATCCGATTGCTGTATGATGATCGTAATAGATGGGTGCCTACTTATATAGGAGATACTTTTTTAGCTGGAATGTGCACACCTCAGCGTTCTGAAAGTATGAACTCTTTCTTCGATAAATACATACACAGGAAAATTAGTCTGAGAGAATTTGTGAAACAGTATGGAACAATTCTGCAAAATAGGTATGAAGAGGAATCAATTGCAGATTTTGATACATGGCACAAACAGCCTGCATTAAAATCTCCTTCGCCTTGGGAAAAACAAATGTCAACAGTTTACACGCATGCAGTATTCAAAAAGTTCCAAGTTGAGGTTTTGGGCGTAGTTGGCTGCCAGCCAAAGAAAGAACATGAAGATGGACCAACTACTACATTCAGAGTTCAAGACTGTGAAAAGGATGAATATTTCATGGTAGCCTGGAACGAAACGAAGTCAGAGGTTTCTTGTTCCTGTCATTTGTTTGAGTACAAAGGTTTCCTTTGTAGACACACACTGATTGTTCTCCAAATGTGTGGCCTCTCAAGTATCCCATCTCATTATATTTTGAAGAGGTGGACAAAAGATGCAAAGATTAGGCAATCAATGGTTGAAGAAACAGAGCGAGTACAGACTAGGGTGCAACGCTACAATGATTTATGCAAGCGAGCCATCGAGTTGAGCGAAGAAGGATCATCATCTGAAGAAACTTATAATATTGCTCTCCGCACACTGGTTGAAGCTTTGAAGAATTGTGTGAATGTGAATAACTCTAATGGTACTGTCATAGAGTTCAGTGGTACTGTTCATGGTATTCGTGAAGCGGAAGAAGAGAATCAAGGAAGCCCTGCAGCAAAAGCAATTAGGAAGAGAAATACAAATAGGAAAAGAAAGGTGCCGGCAAAGCAAGATGGTGTACTTGTTGAATCACAAGACAGCTTGCAGCAAATGGATAACTTAAGCTCAGACGGTATAGCACTTAATGGATATTATGGTGCCCAACAGAATGTGCACGGACTGGTACAGTTAAACTTGATGGAGCCACCTCATGACAGTTACTATGTTAACCAGCAGAGTATGCAAGGGCTGGGACAACTGAATTCAATAGCACCCAACCATGATGGTTTCTTCGGGGCTCAGCAAAGCATTCATGGGATGGGACAGTTGGACTTCAGACCATCAAGTAGTTTCAGTTACAGCTTGCAGGATGATCCGCATCTGAGATCTTCGCAGTTGCATGACGATGCTTCAAGACATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

840

Amino Acids

96.32

Weight (kDa)

6.3

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	76 - 163	4.4e-29	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	246 - 366	2.1e-07	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	283 - 375	3.3e-21	MULE transposase domain
SWIM	PF04434	572 - 599	4.5e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15090 AT4G15090 AT4G15090 AT4G15090 AT4G15090
fragaria_vesca	FvH4_6g39512 FvH4_6g39512 FvH4_6g39512
malus_domestica	MD09G1139600.v1.1
prunus_persica	Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1
pyrus_communis	pycom09g06040
rosa_chinensis	RchiOBHm_Chr2g0153561
rosa_multiflora	Rmu_sc0002290.1_g000008 Rmu_sc0005507.1_g000038 Rmu_sc0017289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094920 Rroxscaffold_2G00134860
rosa_rugosa	Rorug02G0440100
rosa_samantha	Rh2AG503300 Rh2BG514000 Rh2CG489100 Rh2DG525700
rosa_wichuraiana	Rw2G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1971
AatII	GACGTC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	496
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	4 cut(s)	618, 1315, 2152, 2252
AccI	GTMKAC	2 cut(s)	376, 1765
AciI	CCGC	5 cut(s)	98, 123, 1984, 2081, 2471
AclWI	GGATC	5 cut(s)	1126, 1276, 1289, 1957, 2462
AcsI	RAATTY	8 cut(s)	16, 200, 305, 320, 455, 793, 1427, 2356
AcuI	CTGAAG	3 cut(s)	1082, 1980, 2413
AcyI	GRCGYC	1 cut(s)	784
AfaI	GTAC	9 cut(s)	620, 628, 1122, 1748, 1887, 2038, 2059, 2175, 2280
AfiI	CCNNNNNNNGG	4 cut(s)	191, 908, 1591, 1990
AflII	CTTAAG	1 cut(s)	2215
AhdI	GACNNNNNGTC	1 cut(s)	372
AhlI	ACTAGT	1 cut(s)	368
AjiI	CACGTC	1 cut(s)	1097
AjnI	CCWGG	1 cut(s)	1697
AjuI	GAANNNNNNNTTGG	2 cut(s)	784, 816
AleI	CACNNNNGTG	1 cut(s)	612
AluBI	AGCT	7 cut(s)	481, 533, 1346, 2000, 2196, 2220, 2457
AluI	AGCT	7 cut(s)	481, 533, 1346, 2000, 2196, 2220, 2457
Alw21I	GWGCWC	2 cut(s)	1358, 2271
Alw26I	GTCTC	1 cut(s)	856
Alw44I	GTGCAC	2 cut(s)	1354, 2267
AlwI	GGATC	5 cut(s)	1126, 1276, 1289, 1957, 2462
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	1 cut(s)	1795
ApaLI	GTGCAC	2 cut(s)	1354, 2267
ApeKI	GCWGC	5 cut(s)	218, 1067, 1611, 2108, 2200
ApoI	RAATTY	8 cut(s)	16, 200, 305, 320, 455, 793, 1427, 2356
Asp700I	GAANNNNTTC	2 cut(s)	1083, 1385
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	41, 1025, 1640
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	4 cut(s)	35, 179, 253, 925
AvaI	CYCGRG	1 cut(s)	639
AvaII	GGWCC	3 cut(s)	41, 1025, 1640
BaeGI	GKGCMC	3 cut(s)	1358, 2257, 2271
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BamHI	GGATCC	1 cut(s)	1281
BanI	GGYRCC	4 cut(s)	618, 1315, 2152, 2252
BanII	GRGCYC	1 cut(s)	2395
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	1001
Bbv12I	GWGCWC	2 cut(s)	1358, 2271
BbvCI	CCTCAGC	1 cut(s)	1362
BbvI	GCAGC	5 cut(s)	230, 1079, 1598, 2120, 2212
BceAI	ACGGC	1 cut(s)	1178
BciT130I	CCWGG	1 cut(s)	1699
BciVI	GTATCC	2 cut(s)	740, 1817
BclI	TGATCA	1 cut(s)	1045
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	1 cut(s)	856
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	4 cut(s)	369, 603, 686, 1893
BfmI	CTRYAG	2 cut(s)	762, 2106
BfoI	RGCGCY	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	2215
BfuAI	ACCTGC	1 cut(s)	496
BfuI	GTATCC	2 cut(s)	740, 1817
BglII	AGATCT	1 cut(s)	2480
BisI	GCNGC	5 cut(s)	219, 1068, 1612, 2109, 2201
BlpI	GCTNAGC	1 cut(s)	2394
BlsI	GCNGC	5 cut(s)	220, 1069, 1613, 2110, 2202
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	2 cut(s)	674, 1699
Bme18I	GGWCC	3 cut(s)	41, 1025, 1640
BmeRI	GACNNNNNGTC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	1097
BmgT120I	GGNCC	3 cut(s)	41, 1025, 1640
BmiI	GGNNCC	6 cut(s)	620, 1283, 1317, 2154, 2254, 2298
BmrFI	CCNGG	2 cut(s)	674, 1699
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	7 cut(s)	304, 688, 799, 1081, 1834, 2482, 2491
BmuI	ACTGGG	1 cut(s)	639
BoxI	GACNNNNGTC	1 cut(s)	681
BpiI	GAAGAC	1 cut(s)	1001
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	2 cut(s)	702, 1362
Bpu1102I	GCTNAGC	1 cut(s)	2394
BpuEI	CTTGAG	2 cut(s)	700, 1786
BpuMI	CCSGG	1 cut(s)	674
BsaBI	GATNNNNATC	3 cut(s)	9, 1954, 2472
BsaHI	GRCGYC	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	638, 1532
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 908, 1591, 1990
Bse118I	RCCGGY	2 cut(s)	282, 2155
Bse1I	ACTGG	4 cut(s)	634, 1128, 1995, 2280
Bse3DI	GCAATG	1 cut(s)	1017
Bse8I	GATNNNNATC	3 cut(s)	9, 1954, 2472
BseBI	CCWGG	1 cut(s)	1699
BseDI	CCNNGG	2 cut(s)	638, 1532
BseGI	GGATG	5 cut(s)	43, 154, 1684, 2418, 2470
BseJI	GATNNNNATC	3 cut(s)	9, 1954, 2472
BseLI	CCNNNNNNNGG	4 cut(s)	191, 908, 1591, 1990
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	8 cut(s)	132, 716, 779, 1376, 1412, 2235, 2408, 2468
BseNI	ACTGG	4 cut(s)	634, 1128, 1995, 2280
BseSI	GKGCMC	3 cut(s)	1358, 2257, 2271
BseXI	GCAGC	5 cut(s)	230, 1079, 1598, 2120, 2212
BseYI	CCCAGC	1 cut(s)	2344
BsgI	GTGCAG	2 cut(s)	84, 128
BshFI	GGCC	1 cut(s)	1797
BshNI	GGYRCC	4 cut(s)	618, 1315, 2152, 2252
BsiHKAI	GWGCWC	2 cut(s)	1358, 2271
BsiHKCI	CYCGRG	1 cut(s)	639
BsiSI	CCGG	3 cut(s)	283, 673, 2156
BslFI	GGGAC	4 cut(s)	379, 689, 2361, 2430
BslI	CCNNNNNNNGG	4 cut(s)	191, 908, 1591, 1990
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	4 cut(s)	379, 689, 2361, 2430
BsmI	GAATGC	2 cut(s)	1199, 2403
BsnI	GGCC	1 cut(s)	1797
BsoBI	CYCGRG	1 cut(s)	639
Bsp1286I	GDGCHC	4 cut(s)	1358, 2257, 2271, 2395
Bsp143I	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
Bsp1720I	GCTNAGC	1 cut(s)	2394
BspACI	CCGC	5 cut(s)	98, 123, 1984, 2081, 2471
BspANI	GGCC	1 cut(s)	1797
BspCNI	CTCAG	8 cut(s)	133, 715, 780, 1375, 1413, 2234, 2407, 2469
BspHI	TCATGA	3 cut(s)	451, 475, 2305
BspLI	GGNNCC	6 cut(s)	620, 1283, 1317, 2154, 2254, 2298
BspMAI	CTGCAG	1 cut(s)	2110
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	5 cut(s)	1126, 1276, 1289, 1957, 2462
BspQI	GCTCTTC	1 cut(s)	771
BspT107I	GGYRCC	4 cut(s)	618, 1315, 2152, 2252
BspTI	CTTAAG	1 cut(s)	2215
BsrDI	GCAATG	1 cut(s)	1017
BsrFI	RCCGGY	2 cut(s)	282, 2155
BsrI	ACTGG	4 cut(s)	634, 1128, 1995, 2280
BssAI	RCCGGY	2 cut(s)	282, 2155
BssECI	CCNNGG	2 cut(s)	638, 1532
BssMI	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
BssNI	GRCGYC	1 cut(s)	784
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	1532
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	1699
Bst6I	CTCTTC	6 cut(s)	416, 771, 1464, 1823, 2082, 2120
BstACI	GRCGYC	1 cut(s)	784
BstAFI	CTTAAG	1 cut(s)	2215
BstAPI	GCANNNNNTGC	2 cut(s)	956, 2335
BstF5I	GGATG	5 cut(s)	43, 154, 1684, 2418, 2470
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	7 cut(s)	1048, 1134, 1284, 1303, 1952, 2470, 2483
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
BstMWI	GCNNNNNNNGC	8 cut(s)	323, 408, 956, 1507, 1608, 2114, 2161, 2335
BstNI	CCWGG	1 cut(s)	1699
BstNSI	RCATGY	5 cut(s)	330, 415, 419, 563, 1568
BstPAI	GACNNNNGTC	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	672, 1697
BstSFI	CTRYAG	2 cut(s)	762, 2106
BstSLI	GKGCMC	3 cut(s)	1358, 2257, 2271
BstV1I	GCAGC	5 cut(s)	230, 1079, 1598, 2120, 2212
BstV2I	GAAGAC	1 cut(s)	1001
BstX2I	RGATCY	3 cut(s)	1131, 1281, 2480
BstXI	CCANNNNNNTGG	3 cut(s)	253, 629, 1793
BstYI	RGATCY	3 cut(s)	1131, 1281, 2480
BsuI	GTATCC	2 cut(s)	740, 1817
BsuRI	GGCC	1 cut(s)	1797
BtrI	CACGTC	1 cut(s)	1097
BtsCI	GGATG	5 cut(s)	43, 154, 1684, 2418, 2470
BtsI	GCAGTG	1 cut(s)	1099
BtsIMutI	CAGTG	6 cut(s)	36, 1041, 1099, 1772, 1988, 2059
BveI	ACCTGC	1 cut(s)	496
CciI	TCATGA	3 cut(s)	451, 475, 2305
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	2 cut(s)	282, 2155
Cfr13I	GGNCC	3 cut(s)	41, 1025, 1640
Csp6I	GTAC	9 cut(s)	619, 627, 1121, 1747, 1886, 2037, 2058, 2174, 2279
CviQI	GTAC	9 cut(s)	619, 627, 1121, 1747, 1886, 2037, 2058, 2174, 2279
DpnI	GATC	7 cut(s)	1047, 1133, 1283, 1302, 1951, 2469, 2482
DpnII	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
DriI	GACNNNNNGTC	1 cut(s)	372
Eam1104I	CTCTTC	6 cut(s)	416, 771, 1464, 1823, 2082, 2120
Eam1105I	GACNNNNNGTC	1 cut(s)	372
EarI	CTCTTC	6 cut(s)	416, 771, 1464, 1823, 2082, 2120
Eco130I	CCWWGG	1 cut(s)	1532
Eco24I	GRGCYC	1 cut(s)	2395
Eco47I	GGWCC	3 cut(s)	41, 1025, 1640
Eco57I	CTGAAG	3 cut(s)	1082, 1980, 2413
Eco88I	CYCGRG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	1025
EcoRI	GAATTC	2 cut(s)	455, 2356
EcoRII	CCWGG	1 cut(s)	1697
EcoT14I	CCWWGG	1 cut(s)	1532
EcoT22I	ATGCAT	2 cut(s)	417, 1199
EcoT38I	GRGCYC	1 cut(s)	2395
ErhI	CCWWGG	1 cut(s)	1532
FalI	AAGNNNNNCTT	2 cut(s)	1743, 1775
FaqI	GGGAC	4 cut(s)	379, 689, 2361, 2430
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	1045
FblI	GTMKAC	2 cut(s)	376, 1765
Fnu4HI	GCNGC	5 cut(s)	219, 1068, 1612, 2109, 2201
FokI	GGATG	5 cut(s)	50, 161, 1691, 2425, 2477
FriOI	GRGCYC	1 cut(s)	2395
Fsp4HI	GCNGC	5 cut(s)	219, 1068, 1612, 2109, 2201
FspBI	CTAG	4 cut(s)	369, 603, 686, 1893
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	5 cut(s)	219, 1068, 1612, 2109, 2201
GsaI	CCCAGC	1 cut(s)	2348
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	1797
HapII	CCGG	3 cut(s)	283, 673, 2156
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	784
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	5 cut(s)	377, 550, 1252, 1551, 2323
HindII	GTYRAC	5 cut(s)	377, 550, 1252, 1551, 2323
HindIII	AAGCTT	1 cut(s)	1998
HpaI	GTTAAC	2 cut(s)	1252, 2323
HpaII	CCGG	3 cut(s)	283, 673, 2156
HphI	GGTGA	4 cut(s)	35, 179, 253, 925
Hpy99I	CGWCG	2 cut(s)	378, 786
HpyAV	CCTTC	6 cut(s)	139, 420, 730, 1057, 1536, 1940
HpyCH4IV	ACGT	2 cut(s)	784, 1096
HpyF10VI	GCNNNNNNNGC	8 cut(s)	323, 408, 956, 1507, 1608, 2114, 2161, 2335
HpySE526I	ACGT	2 cut(s)	784, 1096
Hsp92I	GRCGYC	1 cut(s)	784
HspAI	GCGC	1 cut(s)	286
KpnI	GGTACC	1 cut(s)	622
KroI	GCCGGC	2 cut(s)	282, 2155
KroNI	GCCGGC	2 cut(s)	284, 2157
Ksp22I	TGATCA	1 cut(s)	1045
KspAI	GTTAAC	2 cut(s)	1252, 2323
Kzo9I	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	3 cut(s)	466, 904, 2296
Lsp1109I	GCAGC	5 cut(s)	230, 1079, 1598, 2120, 2212
LweI	GCATC	7 cut(s)	304, 688, 799, 1081, 1834, 2482, 2491
MaeI	CTAG	4 cut(s)	369, 603, 686, 1893
MaeII	ACGT	2 cut(s)	784, 1096
MaeIII	GTNAC	4 cut(s)	343, 1097, 2312, 2450
MalI	GATC	7 cut(s)	1047, 1133, 1283, 1302, 1951, 2469, 2482
MboI	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
MfeI	CAATTG	2 cut(s)	894, 1479
MflI	RGATCY	3 cut(s)	1131, 1281, 2480
MhlI	GDGCHC	4 cut(s)	1358, 2257, 2271, 2395
MlyI	GAGTC	2 cut(s)	351, 691
MmeI	TCCRAC	2 cut(s)	800, 2403
Mph1103I	ATGCAT	2 cut(s)	417, 1199
MroNI	GCCGGC	2 cut(s)	282, 2155
MroXI	GAANNNNTTC	2 cut(s)	1083, 1385
MseI	TTAA	9 cut(s)	723, 840, 1188, 1251, 1517, 2216, 2238, 2285, 2322
MslI	CAYNNNNRTG	7 cut(s)	416, 474, 519, 612, 982, 1635, 2499
MspCI	CTTAAG	1 cut(s)	2215
MspI	CCGG	3 cut(s)	283, 673, 2156
MspR9I	CCNGG	2 cut(s)	674, 1699
MunI	CAATTG	2 cut(s)	894, 1479
Mva1269I	GAATGC	2 cut(s)	1199, 2403
MvaI	CCWGG	1 cut(s)	1699
MwoI	GCNNNNNNNGC	8 cut(s)	323, 408, 956, 1507, 1608, 2114, 2161, 2335
NaeI	GCCGGC	2 cut(s)	284, 2157
NciI	CCSGG	1 cut(s)	674
NdeII	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
NgoMIV	GCCGGC	2 cut(s)	282, 2155
NlaIV	GGNNCC	6 cut(s)	620, 1283, 1317, 2154, 2254, 2298
NmuCI	GTSAC	2 cut(s)	343, 1097
NsiI	ATGCAT	2 cut(s)	417, 1199
NspI	RCATGY	5 cut(s)	330, 415, 419, 563, 1568
OliI	CACNNNNGTG	1 cut(s)	612
PaeI	GCATGC	3 cut(s)	415, 563, 1568
PagI	TCATGA	3 cut(s)	451, 475, 2305
PciSI	GCTCTTC	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	1938
PctI	GAATGC	2 cut(s)	1199, 2403
PdiI	GCCGGC	2 cut(s)	284, 2157
PdmI	GAANNNNTTC	2 cut(s)	1083, 1385
PfeI	GAWTC	8 cut(s)	206, 258, 353, 511, 742, 1475, 2092, 2183
PkrI	GCNGC	5 cut(s)	220, 1069, 1613, 2110, 2202
PleI	GAGTC	2 cut(s)	350, 690
PpsI	GAGTC	2 cut(s)	350, 690
PpuMI	RGGWCCY	1 cut(s)	1025
PshAI	GACNNNNGTC	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	1971
Psp5II	RGGWCCY	1 cut(s)	1025
Psp6I	CCWGG	1 cut(s)	1697
PspFI	CCCAGC	1 cut(s)	2344
PspGI	CCWGG	1 cut(s)	1697
PspN4I	GGNNCC	6 cut(s)	620, 1283, 1317, 2154, 2254, 2298
PspPI	GGNCC	3 cut(s)	41, 1025, 1640
PspPPI	RGGWCCY	1 cut(s)	1025
PstI	CTGCAG	1 cut(s)	2110
PsuI	RGATCY	3 cut(s)	1131, 1281, 2480
RsaI	GTAC	9 cut(s)	620, 628, 1122, 1748, 1887, 2038, 2059, 2175, 2280
RsaNI	GTAC	9 cut(s)	619, 627, 1121, 1747, 1886, 2037, 2058, 2174, 2279
RseI	CAYNNNNRTG	7 cut(s)	416, 474, 519, 612, 982, 1635, 2499
SalI	GTCGAC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	9 cut(s)	723, 840, 1188, 1251, 1517, 2216, 2238, 2285, 2322
SatI	GCNGC	5 cut(s)	219, 1068, 1612, 2109, 2201
Sau3AI	GATC	7 cut(s)	1045, 1131, 1281, 1300, 1949, 2467, 2480
Sau96I	GGNCC	3 cut(s)	41, 1025, 1640
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	2 cut(s)	351, 691
ScrFI	CCNGG	2 cut(s)	674, 1699
SduI	GDGCHC	4 cut(s)	1358, 2257, 2271, 2395
SfaNI	GCATC	7 cut(s)	304, 688, 799, 1081, 1834, 2482, 2491
SfcI	CTRYAG	2 cut(s)	762, 2106
SinI	GGWCC	3 cut(s)	41, 1025, 1640
SmiMI	CAYNNNNRTG	7 cut(s)	416, 474, 519, 612, 982, 1635, 2499
SmlI	CTYRAG	3 cut(s)	679, 1801, 2215
SmoI	CTYRAG	3 cut(s)	679, 1801, 2215
SpeI	ACTAGT	1 cut(s)	368
SphI	GCATGC	3 cut(s)	415, 563, 1568
SsiI	CCGC	5 cut(s)	98, 123, 1984, 2081, 2471
SspI	AATATT	2 cut(s)	1685, 1975
SspMI	CTAG	4 cut(s)	369, 603, 686, 1893
StyD4I	CCNGG	2 cut(s)	672, 1697
StyI	CCWWGG	1 cut(s)	1532
TaiI	ACGT	2 cut(s)	787, 1099
TaqI	TCGA	4 cut(s)	376, 1211, 1392, 1932
TatI	WGTACW	5 cut(s)	626, 1120, 1746, 1885, 2173
TfiI	GAWTC	8 cut(s)	206, 258, 353, 511, 742, 1475, 2092, 2183
Tru1I	TTAA	9 cut(s)	723, 840, 1188, 1251, 1517, 2216, 2238, 2285, 2322
Tru9I	TTAA	9 cut(s)	723, 840, 1188, 1251, 1517, 2216, 2238, 2285, 2322
TscAI	CASTG	6 cut(s)	36, 1048, 1106, 1779, 1995, 2059
TseFI	GTSAC	2 cut(s)	343, 1097
TseI	GCWGC	5 cut(s)	218, 1067, 1611, 2108, 2200
Tsp45I	GTSAC	2 cut(s)	343, 1097
TspGWI	ACGGA	2 cut(s)	589, 2286
TspRI	CASTG	6 cut(s)	36, 1048, 1106, 1779, 1995, 2059
Vha464I	CTTAAG	1 cut(s)	2215
VneI	GTGCAC	2 cut(s)	1354, 2267
VpaK11BI	GGWCC	3 cut(s)	41, 1025, 1640
XapI	RAATTY	8 cut(s)	16, 200, 305, 320, 455, 793, 1427, 2356
XbaI	TCTAGA	2 cut(s)	602, 685
XceI	RCATGY	5 cut(s)	330, 415, 419, 563, 1568
XmiI	GTMKAC	2 cut(s)	376, 1765
XmnI	GAANNNNTTC	2 cut(s)	1083, 1385
XspI	CTAG	4 cut(s)	369, 603, 686, 1893
ZraI	GACGTC	1 cut(s)	785
ZrmI	AGTACT	1 cut(s)	628
Zsp2I	ATGCAT	2 cut(s)	417, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.