Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006484

Physical Location & Seq

Genomic Coordinates Reverse (-)

56389708 .. 56393253

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0440100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3546 bp

ATGGCCATTGCAATTATCATCGATTTGATCTATGGTCTTGTTCTTATTTACTTCCTTTACATAGTCGCAAGTGAATTTGCTTTCAGATTCTCCAAGAGAAAGTATAAGTTGATTAAAAGAGAATGGAGATTACTGGGTGCTCTATTAGAGGATTTCGATGAAGTTACAAGATCTGGGATTCAAATTACCCAGAAAGCCAGTACACTTTTGGATTCAGGACCTGTCCAAGCTGGATTAACTATACAACTGAATGATAAGGAAACCGGCTGGATAACGAATGCAAGAAAAGTGGTTACTTGTGTTCAAAGCTTTCGAAGGTTGAGAAAGAGAAGACAATATCCAATGCTGTTTTTCTATGTCTTGGTTGATCTGGTACCGATGATTGGTGTTGCCCTTGGGATGAAATGGCTCACTGATGTCCTTGGGGAGAAGAAATTATGTGCCGACATCTGTAGATCACTGGAGCAGACAAGTTCCAAGGTTCGGAGTCTGCAGGACAGATCTTATGTTGATGAAGTTGAATGTATATCTGTCAATTCTGTGCCACCAACAGCCCAACTTGGCTTGAGAATTGATCCTGAGTTGATCATTTCCTCTGTCAGAACCTCTGTCACTGAAAAACCAGAAGTTAAATCCTTCATAATGCATTTGCAGCTACTGCAGGCTTTCATGAAAGATTTGCGAAGGCTCAAAGTACTGGAAAGTAAAAGGGAGGAGTCCTGGGTGATAGCAGCAAACAAGACCCTTGAAAAAGCAAAGGGTGCCACTAAAATCATTAATAAAGCAGCAGCAAATCAACGAAGAAGTTGGCTTTCAGATTGCAGAAATTGGAGGGCTGGGAGGAAGCTTAATGGGCACATAATGTACTTTGACAGCAGAATCTCTGGTCTCCTGGAAACAAAGGAAAGATACGGTTTTAAATTTGTCAAACGAGACTCATCATTGAGATCTGCTGTACACCGCGCTTCTCAACGGAAAAGCAATCAATATCAGATCACAGATGATAAGGATCTCTCTGATTTAAACAGCATTCGGAACCGGCTCATTCAACTGCCAAAAACAAGCAATAAGGTGGTATCTCATGTCAGCTCATTGAGCAAGGAGCTGGAGCATATGCATAAGCTGTTGGAAGATACAAAAGCAACTGAATATGCGGGTAATTTTAGAAATTCTTGCTTGGAGCAATTGAAGAAAATGGTTTGTGAAGCAGAGCGGTACTCAATAACCCACATGGAGGACTCTGACTCAGAGTATCTGTCTGAGATTCAACGAATCACAGATGCTGTCATTCTTCTTCAACAATGTGTGAAAGTATATTCCATTGAGGTCAGGAAGGAGTCATGCTCGGTCGTTGGGTTTGACGAAGACATACATAAACTGGTCCAGCAATTGACAGCTAACAGTGAATTGCATATCATTTCCATTGGGGGAATGAAGGGCATTGGTAAGACAACTCTGGCGAAGAAAGTTTATCACCATGGTACCATTGCAAGCCATTTTAAAGTCCGACGATGGGTATCTATACCTCACATGCATAATGAAAATGCACTTCTGAGAAGTGTTGGAAGCCAGATTGTGAAGAGCGAAGAGAAATGGACTGCAAAAGATTTCTGGATCAAGAACGTGCGTGATTTCTTGAAGGAGAAGCGATACCTTTTAGTTTTGGACAATGTCCCATCAAAGGAAGTCTTGGATTCTCTTAAAGCAGCATTATTTCCAGAAATGATGAATGGGAGTAAGGTGGTGCTAACCACAAACAGCAAGGCCCTGGCTTTACATGTTGATACTGATCAAAATAGTACTCAATATCCAATTCGGCTACGAACCCAAGAAGAGAGCTGGGAATTTTTCACCCAGATGGTGCACATTTATTCTGATCAAGAAGAAACCAATGCAAAGAAACTTGTAGCAAGAACTGGAGGCTTACCACTTGTGATCTTACGTCTTGGGTATCTACTGTCAAGGAAGAAAGTGACAGCTGAGGAACTGTCAAGGCTGCTTGATCGTATCACTCATGGGCGGAACCAAACACCATGGTTAGATACTCTAGCACTAAATAAAAAGGATTTGCAAGAAGGTCACTTCGAACTCTTCCCTGGTGAGTTTGAAATCCCTGCAAGGAGATTAGTGGCTTCATGGATTGCAAAAGGGTTGGTGGCAGAAGATTTTGCATTCGATCATCTCTTAGATTTGATCAACCGCTGTATGATTCAAGTAGTTGAAAGGAAGCCTAATGGGGATGTCAAGACATGTCGCTTGCCTTCTGCGCTTCGGGAACTCTGGTTGCAAGACAAAGGCAATAGCAGCAAAACATGCTCATGGTCCCAAAGTACAAGTCCAGACCAGCAACTTATTGCCTATCACTTTGATGATAATGATGCCAGTTTCAGTAGGATCAATGGTCTCAACATGAATACGCCAAATGTTTTGCAGAATGGCAAGTATCCCCAATCCATTCTTTTCTTTGATACTCGAGAAGGAAATAAACCAGGAGAGGAGATAGGTTACTTTCTTCGCAAGGGTATTGCTGGTAGTTTCTTTCAGCAGCTGCTGGTTCTTGACCTGGAGCGTGTATTCAGACCTCAATTACCGACTACCATAGGTAAATTAAAGAAGCTGAAATATCTAGGCTTAAGGTGGACATACCTAGAGGAAATGCCAGCATCTATAGGCAATTTGGTGGAACTCCAAACTCTAGATTTGAAGCATACTCGTATTACAATTATCTCAAGTTCAATTTGGAAACTGAAGAACCTTCGGCACCTGTACTTGAATGAGAATTGTCGAATCAAATTTAGGTCCCTAACAGCTGCCATTTCCATGAGGGAACTGAAGACACTATCAGGTGTATTTCTAGATAAGGGGAATCTTGTGAAGGATCGACTCGACAAGTTGACCAACCTTCGAAAGTTGGGATTGACATTCCAGCTGACGCAGCCAGAGCAAAAGGTCATAGCAAGATGGATTGTGCAGCTGAATGACTTGGAGTCTTTGAAGTTGGCATCTATTAATGAGAAGAGTGCACCTCAACTTCTGAGATTGAAACCTCTTTTACGCCTCAAGAAACTGTCCACCCTATACTTGTCTGGAAAGCTTGAAAACCCATCCATTGAACTCCCTGAAAGTCTTATTCATCTTACCTTATCAGCCTCTGGAATTGTTAATGATCCAATGCCAAAGTTAGGGAAGCTTCCAAATCTCAAATCCCTTGCTTTGAACTCTGATTCTTATCAAGGAACAGACATGGTTTGCTCAGTGAATGACTTTCCCCAGCTTTTTGTTCTCAAGCTTTGGAAACTAGATACTCTAAAAAGATTGGTTGTGCAAGAAGGAGCAATGCGGAATCTTAGGGAGTTGGAGATTAGATCCTGCAGGATCTTGACATCTACTTCTGGATTAACACATTTGAAGATCCTACAGGAATTGAAGTTAACTAATATGCCTAACAAATACACAGGCCATGTGGAAAATGACTTTGCAGAAGCTGTGCTACGGTCTGCTGGCAAAGCTATTCACTGTCCTGCGATCAAAATTGATAATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

1181

Amino Acids

135.08

Weight (kDa)

9.51

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	454 - 622	6.3e-31	NB-ARC domain
WHD_DRP	PF23559	697 - 760	1.9e-06	Disease resistance protein Winged helix domain
LRR_14	PF23598	845 - 1169	5.2e-39	Leucine-rich repeat region
LRR_8	PF13855	872 - 927	5.1e-06	Leucine rich repeat
LRR_4	PF12799	895 - 930	1.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15090 AT4G15090 AT4G15090 AT4G15090 AT4G15090
fragaria_vesca	FvH4_6g39512 FvH4_6g39512 FvH4_6g39512
malus_domestica	MD09G1139600.v1.1
prunus_persica	Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1
pyrus_communis	pycom09g06040
rosa_chinensis	RchiOBHm_Chr2g0153561
rosa_multiflora	Rmu_sc0002290.1_g000008 Rmu_sc0005507.1_g000038 Rmu_sc0017289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094920 Rroxscaffold_2G00134860
rosa_rugosa	Rorug02G0440100
rosa_samantha	Rh2AG503300 Rh2BG514000 Rh2CG489100 Rh2DG525700
rosa_wichuraiana	Rw2G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	373, 1481
AccB1I	GGYRCC	4 cut(s)	373, 761, 1481, 2760
AccBSI	CCGCTC	1 cut(s)	1213
AccII	CGCG	1 cut(s)	963
AciI	CCGC	6 cut(s)	961, 1154, 1213, 2020, 2200, 3340
AclWI	GGATC	9 cut(s)	569, 1017, 1622, 2402, 2886, 3161, 3360, 3383, 3406
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	74, 920, 1168, 1844, 2792
AcuI	CTGAAG	2 cut(s)	2768, 2852
AfiI	CCNNNNNNNGG	6 cut(s)	383, 483, 1234, 1513, 1681, 3182
AflII	CTTAAG	1 cut(s)	2632
AflIII	ACRYGT	2 cut(s)	1777, 2249
AhdI	GACNNNNNGTC	1 cut(s)	2986
AjnI	CCWGG	6 cut(s)	719, 891, 1767, 2095, 2488, 2562
Alw21I	GWGCWC	3 cut(s)	142, 1866, 3025
Alw26I	GTCTC	3 cut(s)	893, 927, 2408
Alw44I	GTGCAC	2 cut(s)	1862, 3021
AlwI	GGATC	9 cut(s)	569, 1017, 1622, 2402, 2886, 3161, 3360, 3383, 3406
AlwNI	CAGNNNCTG	7 cut(s)	221, 658, 1283, 2548, 2551, 3152, 3485
Ama87I	CYCGRG	1 cut(s)	2472
AoxI	GGCC	3 cut(s)	3, 1764, 3457
ApaLI	GTGCAC	2 cut(s)	1862, 3021
ApoI	RAATTY	5 cut(s)	74, 920, 1168, 1844, 2792
ArsI	GACNNNNNNTTYG	2 cut(s)	2320, 2352
AseI	ATTAAT	2 cut(s)	777, 3009
Asp718I	GGTACC	2 cut(s)	373, 1481
AspLEI	GCGC	2 cut(s)	965, 2269
AspS9I	GGNCC	5 cut(s)	218, 1381, 1765, 2322, 2799
AsuHPI	GGTGA	4 cut(s)	736, 1466, 1843, 2111
AsuII	TTCGAA	3 cut(s)	313, 2085, 2905
AvaI	CYCGRG	1 cut(s)	2472
AvaII	GGWCC	4 cut(s)	218, 1381, 2322, 2799
BaeGI	GKGCMC	3 cut(s)	858, 1866, 3025
BaeI	ACNNNNGTAYC	2 cut(s)	1465, 1498
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	4 cut(s)	373, 761, 1481, 2760
BarI	GAAGNNNNNNTAC	2 cut(s)	3474, 3506
BbsI	GAAGAC	3 cut(s)	337, 1371, 2840
Bbv12I	GWGCWC	3 cut(s)	142, 1866, 3025
BbvCI	CCTCAGC	1 cut(s)	1980
BccI	CCATC	5 cut(s)	1506, 1684, 1852, 2955, 3112
BciT130I	CCWGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
BciVI	GTATCC	1 cut(s)	2454
BclI	TGATCA	4 cut(s)	585, 1789, 1876, 2193
BcoDI	GTCTC	3 cut(s)	893, 927, 2408
BfaI	CTAG	6 cut(s)	2048, 2627, 2648, 2696, 2855, 3299
BfmI	CTRYAG	6 cut(s)	451, 491, 659, 2667, 3370, 3416
BfrI	CTTAAG	1 cut(s)	2632
BfuI	GTATCC	1 cut(s)	2454
BglII	AGATCT	3 cut(s)	170, 500, 947
BmcAI	AGTACT	2 cut(s)	696, 1801
Bme1390I	CCNGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
Bme18I	GGWCC	4 cut(s)	218, 1381, 2322, 2799
BmeRI	GACNNNNNGTC	1 cut(s)	2986
BmeT110I	CYCGRG	1 cut(s)	2472
BmgT120I	GGNCC	5 cut(s)	218, 1381, 1765, 2322, 2799
BmiI	GGNNCC	8 cut(s)	375, 763, 1037, 1483, 2024, 2324, 2762, 2801
BmrFI	CCNGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	4 cut(s)	1270, 2368, 2672, 3011
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	3 cut(s)	337, 1371, 2840
BplI	GAGNNNNNCTC	6 cut(s)	1202, 1234, 1328, 1360, 3010, 3042
BpmI	CTGGAG	4 cut(s)	482, 1127, 1938, 2585
Bpu10I	CCTNAGC	1 cut(s)	1980
Bpu14I	TTCGAA	3 cut(s)	313, 2085, 2905
BpuEI	CTTGAG	4 cut(s)	586, 2713, 3044, 3269
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	4 cut(s)	1008, 1516, 1788, 3228
BsaI	GGTCTC	2 cut(s)	893, 2408
BsaJI	CCNNGG	8 cut(s)	394, 421, 477, 720, 1477, 1767, 2033, 2095
Bsc4I	CCNNNNNNNGG	6 cut(s)	383, 483, 1234, 1513, 1681, 3182
Bse118I	RCCGGY	2 cut(s)	263, 1038
Bse1I	ACTGG	7 cut(s)	138, 198, 465, 702, 1383, 1921, 2382
Bse3DI	GCAATG	3 cut(s)	6, 1485, 3342
Bse8I	GATNNNNATC	4 cut(s)	1008, 1516, 1788, 3228
BseBI	CCWGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	8 cut(s)	394, 421, 477, 720, 1477, 1767, 2033, 2095
BseGI	GGATG	3 cut(s)	405, 2245, 3104
BseJI	GATNNNNATC	4 cut(s)	1008, 1516, 1788, 3228
BseLI	CCNNNNNNNGG	6 cut(s)	383, 483, 1234, 1513, 1681, 3182
BseMI	GCAATG	3 cut(s)	6, 1485, 3342
BseMII	CTCAG	7 cut(s)	570, 1251, 1260, 1544, 1971, 3026, 3267
BseNI	ACTGG	7 cut(s)	138, 198, 465, 702, 1383, 1921, 2382
BseRI	GAGGAG	2 cut(s)	728, 2510
BseSI	GKGCMC	3 cut(s)	858, 1866, 3025
BseYI	CCCAGC	3 cut(s)	836, 1839, 3270
BsgI	GTGCAG	1 cut(s)	2990
Bsh1236I	CGCG	1 cut(s)	963
Bsh1285I	CGRYCG	1 cut(s)	1350
BshFI	GGCC	3 cut(s)	5, 1766, 3459
BshNI	GGYRCC	4 cut(s)	373, 761, 1481, 2760
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	1350
BsiHKAI	GWGCWC	3 cut(s)	142, 1866, 3025
BsiHKCI	CYCGRG	1 cut(s)	2472
BsiSI	CCGG	2 cut(s)	264, 1039
BslFI	GGGAC	3 cut(s)	1658, 2308, 2785
BslI	CCNNNNNNNGG	6 cut(s)	383, 483, 1234, 1513, 1681, 3182
BsmAI	GTCTC	3 cut(s)	893, 927, 2408
BsmFI	GGGAC	3 cut(s)	1658, 2308, 2785
BsmI	GAATGC	3 cut(s)	283, 1029, 2171
BsnI	GGCC	3 cut(s)	5, 1766, 3459
Bso31I	GGTCTC	2 cut(s)	893, 2408
BsoBI	CYCGRG	1 cut(s)	2472
Bsp119I	TTCGAA	3 cut(s)	313, 2085, 2905
Bsp1286I	GDGCHC	4 cut(s)	142, 858, 1866, 3025
Bsp1407I	TGTACA	1 cut(s)	955
Bsp19I	CCATGG	2 cut(s)	1477, 2033
BspACI	CCGC	6 cut(s)	961, 1154, 1213, 2020, 2200, 3340
BspANI	GGCC	3 cut(s)	5, 1766, 3459
BspCNI	CTCAG	7 cut(s)	571, 1252, 1259, 1545, 1972, 3027, 3266
BspDI	ATCGAT	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	963
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	8 cut(s)	375, 763, 1037, 1483, 2024, 2324, 2762, 2801
BspMAI	CTGCAG	3 cut(s)	495, 663, 3374
BspPI	GGATC	9 cut(s)	569, 1017, 1622, 2402, 2886, 3161, 3360, 3383, 3406
BspQI	GCTCTTC	1 cut(s)	1574
BspT104I	TTCGAA	3 cut(s)	313, 2085, 2905
BspT107I	GGYRCC	4 cut(s)	373, 761, 1481, 2760
BspTI	CTTAAG	1 cut(s)	2632
BspTNI	GGTCTC	2 cut(s)	893, 2408
BsrBI	CCGCTC	1 cut(s)	1213
BsrDI	GCAATG	3 cut(s)	6, 1485, 3342
BsrFI	RCCGGY	2 cut(s)	263, 1038
BsrGI	TGTACA	1 cut(s)	955
BsrI	ACTGG	7 cut(s)	138, 198, 465, 702, 1383, 1921, 2382
BssAI	RCCGGY	2 cut(s)	263, 1038
BssECI	CCNNGG	8 cut(s)	394, 421, 477, 720, 1477, 1767, 2033, 2095
BssT1I	CCWWGG	5 cut(s)	394, 421, 477, 1477, 2033
Bst2UI	CCWGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
Bst4CI	ACNGT	7 cut(s)	914, 1403, 1959, 1989, 3069, 3495, 3518
Bst6I	CTCTTC	5 cut(s)	1574, 1581, 1827, 2096, 3011
BstAFI	CTTAAG	1 cut(s)	2632
BstAPI	GCANNNNNTGC	3 cut(s)	658, 761, 2313
BstAUI	TGTACA	1 cut(s)	955
BstBI	TTCGAA	3 cut(s)	313, 2085, 2905
BstC8I	GCNNGC	5 cut(s)	663, 1492, 2258, 2661, 3502
BstDEI	CTNAG	9 cut(s)	579, 1246, 1260, 1553, 1980, 2185, 3035, 3253, 3347
BstDSI	CCRYGG	2 cut(s)	1477, 2033
BstF5I	GGATG	3 cut(s)	405, 2245, 3104
BstFNI	CGCG	1 cut(s)	963
BstHHI	GCGC	2 cut(s)	965, 2269
BstMAI	GTCTC	3 cut(s)	893, 927, 2408
BstMCI	CGRYCG	1 cut(s)	1350
BstNI	CCWGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
BstNSI	RCATGY	4 cut(s)	1534, 1781, 2253, 2316
BstSCI	CCNGG	6 cut(s)	719, 891, 1767, 2095, 2488, 2562
BstSFI	CTRYAG	6 cut(s)	451, 491, 659, 2667, 3370, 3416
BstSLI	GKGCMC	3 cut(s)	858, 1866, 3025
BstUI	CGCG	1 cut(s)	963
BstV2I	GAAGAC	3 cut(s)	337, 1371, 2840
BstX2I	RGATCY	7 cut(s)	170, 500, 947, 1009, 3365, 3375, 3411
BstYI	RGATCY	7 cut(s)	170, 500, 947, 1009, 3365, 3375, 3411
Bsu15I	ATCGAT	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	2454
BsuRI	GGCC	3 cut(s)	5, 1766, 3459
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	1477, 2033
BtsCI	GGATG	3 cut(s)	405, 2245, 3104
BtsIMutI	CAGTG	6 cut(s)	411, 458, 612, 1408, 3261, 3514
Cac8I	GCNNGC	5 cut(s)	663, 1492, 2258, 2661, 3502
CaiI	CAGNNNCTG	7 cut(s)	221, 658, 1283, 2548, 2551, 3152, 3485
CciI	TCATGA	1 cut(s)	669
CfoI	GCGC	2 cut(s)	965, 2269
Cfr10I	RCCGGY	2 cut(s)	263, 1038
Cfr13I	GGNCC	5 cut(s)	218, 1381, 1765, 2322, 2799
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	2941
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
DdeI	CTNAG	9 cut(s)	579, 1246, 1260, 1553, 1980, 2185, 3035, 3253, 3347
DraI	TTTAAA	3 cut(s)	919, 1023, 1501
DriI	GACNNNNNGTC	1 cut(s)	2986
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	1574, 1581, 1827, 2096, 3011
Eam1105I	GACNNNNNGTC	1 cut(s)	2986
EarI	CTCTTC	5 cut(s)	1574, 1581, 1827, 2096, 3011
EciI	GGCGGA	1 cut(s)	2035
Eco130I	CCWWGG	5 cut(s)	394, 421, 477, 1477, 2033
Eco31I	GGTCTC	2 cut(s)	893, 2408
Eco47I	GGWCC	4 cut(s)	218, 1381, 2322, 2799
Eco57I	CTGAAG	2 cut(s)	2768, 2852
Eco88I	CYCGRG	1 cut(s)	2472
EcoO109I	RGGNCCY	3 cut(s)	218, 1765, 2799
EcoRII	CCWGG	6 cut(s)	719, 891, 1767, 2095, 2488, 2562
EcoT14I	CCWWGG	5 cut(s)	394, 421, 477, 1477, 2033
EcoT22I	ATGCAT	3 cut(s)	648, 1119, 1536
ErhI	CCWWGG	5 cut(s)	394, 421, 477, 1477, 2033
FalI	AAGNNNNNCTT	2 cut(s)	1673, 1705
FaqI	GGGAC	3 cut(s)	1658, 2308, 2785
FauI	CCCGC	1 cut(s)	1147
FauNDI	CATATG	1 cut(s)	1113
FbaI	TGATCA	4 cut(s)	585, 1789, 1876, 2193
FokI	GGATG	3 cut(s)	412, 2252, 3091
FspBI	CTAG	6 cut(s)	2048, 2627, 2648, 2696, 2855, 3299
GlaI	GCGC	2 cut(s)	964, 2268
GsaI	CCCAGC	3 cut(s)	840, 1843, 3274
GsuI	CTGGAG	4 cut(s)	482, 1127, 1938, 2585
HaeIII	GGCC	3 cut(s)	5, 1766, 3459
HapII	CCGG	2 cut(s)	264, 1039
HgaI	GACGC	1 cut(s)	2941
HhaI	GCGC	2 cut(s)	965, 2269
Hin6I	GCGC	2 cut(s)	963, 2267
HinP1I	GCGC	2 cut(s)	963, 2267
HincII	GTYRAC	2 cut(s)	2895, 3432
HindII	GTYRAC	2 cut(s)	2895, 3432
HindIII	AAGCTT	5 cut(s)	307, 845, 3092, 3188, 3287
HpaI	GTTAAC	1 cut(s)	3432
HpaII	CCGG	2 cut(s)	264, 1039
HphI	GGTGA	4 cut(s)	736, 1466, 1843, 2111
Hpy166II	GTNNAC	8 cut(s)	203, 958, 1864, 2640, 2895, 3023, 3072, 3432
Hpy8I	GTNNAC	8 cut(s)	203, 958, 1864, 2640, 2895, 3023, 3072, 3432
Hpy99I	CGWCG	1 cut(s)	1512
HpyCH4III	ACNGT	7 cut(s)	914, 1403, 1959, 1989, 3069, 3495, 3518
HpyCH4IV	ACGT	2 cut(s)	1623, 1942
HpyF3I	CTNAG	9 cut(s)	579, 1246, 1260, 1553, 1980, 2185, 3035, 3253, 3347
HpySE526I	ACGT	2 cut(s)	1623, 1942
HspAI	GCGC	2 cut(s)	963, 2267
KpnI	GGTACC	2 cut(s)	377, 1485
Ksp22I	TGATCA	4 cut(s)	585, 1789, 1876, 2193
KspAI	GTTAAC	1 cut(s)	3432
LguI	GCTCTTC	1 cut(s)	1574
LmnI	GCTCC	6 cut(s)	463, 1102, 1108, 1180, 2566, 3332
LweI	GCATC	4 cut(s)	1270, 2368, 2672, 3011
MaeI	CTAG	6 cut(s)	2048, 2627, 2648, 2696, 2855, 3299
MaeII	ACGT	2 cut(s)	1623, 1942
MaeIII	GTNAC	6 cut(s)	163, 292, 610, 1972, 2078, 2504
MbiI	CCGCTC	1 cut(s)	1213
MfeI	CAATTG	2 cut(s)	1184, 1388
MflI	RGATCY	7 cut(s)	170, 500, 947, 1009, 3365, 3375, 3411
MhlI	GDGCHC	4 cut(s)	142, 858, 1866, 3025
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	8 cut(s)	496, 725, 929, 1232, 1238, 1346, 2877, 2996
MmeI	TCCRAC	4 cut(s)	1107, 1531, 1543, 3336
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	3 cut(s)	648, 1119, 1536
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	4 cut(s)	1856, 2317, 2367, 2819
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	6 cut(s)	1979, 2202, 2548, 2810, 2929, 2974
MspCI	CTTAAG	1 cut(s)	2632
MspI	CCGG	2 cut(s)	264, 1039
MspR9I	CCNGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
MunI	CAATTG	2 cut(s)	1184, 1388
Mva1269I	GAATGC	3 cut(s)	283, 1029, 2171
MvaI	CCWGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
MvnI	CGCG	1 cut(s)	963
NcoI	CCATGG	2 cut(s)	1477, 2033
NdeI	CATATG	1 cut(s)	1113
NlaIV	GGNNCC	8 cut(s)	375, 763, 1037, 1483, 2024, 2324, 2762, 2801
NmuCI	GTSAC	3 cut(s)	610, 1972, 2078
NsiI	ATGCAT	3 cut(s)	648, 1119, 1536
NspI	RCATGY	4 cut(s)	1534, 1781, 2253, 2316
NspV	TTCGAA	3 cut(s)	313, 2085, 2905
PaeR7I	CTCGAG	1 cut(s)	2472
PagI	TCATGA	1 cut(s)	669
PciI	ACATGT	2 cut(s)	1777, 2249
PciSI	GCTCTTC	1 cut(s)	1574
PctI	GAATGC	3 cut(s)	283, 1029, 2171
PflFI	GACNNNGTC	1 cut(s)	1670
PfoI	TCCNGGA	1 cut(s)	891
PleI	GAGTC	8 cut(s)	495, 724, 929, 1232, 1238, 1345, 2877, 2995
PpsI	GAGTC	8 cut(s)	495, 724, 929, 1232, 1238, 1345, 2877, 2995
PpuMI	RGGWCCY	2 cut(s)	218, 2799
PscI	ACATGT	2 cut(s)	1777, 2249
PshBI	ATTAAT	2 cut(s)	777, 3009
Psp5II	RGGWCCY	2 cut(s)	218, 2799
Psp6I	CCWGG	6 cut(s)	719, 891, 1767, 2095, 2488, 2562
PspFI	CCCAGC	3 cut(s)	836, 1839, 3270
PspGI	CCWGG	6 cut(s)	719, 891, 1767, 2095, 2488, 2562
PspN4I	GGNNCC	8 cut(s)	375, 763, 1037, 1483, 2024, 2324, 2762, 2801
PspPI	GGNCC	5 cut(s)	218, 1381, 1765, 2322, 2799
PspPPI	RGGWCCY	2 cut(s)	218, 2799
PstI	CTGCAG	3 cut(s)	495, 663, 3374
PstNI	CAGNNNCTG	7 cut(s)	221, 658, 1283, 2548, 2551, 3152, 3485
PsuI	RGATCY	7 cut(s)	170, 500, 947, 1009, 3365, 3375, 3411
PsyI	GACNNNGTC	1 cut(s)	1670
PvuII	CAGCTG	5 cut(s)	1979, 2548, 2810, 2929, 2974
RseI	CAYNNNNRTG	4 cut(s)	1856, 2317, 2367, 2819
SapI	GCTCTTC	1 cut(s)	1574
Sau96I	GGNCC	5 cut(s)	218, 1381, 1765, 2322, 2799
SbfI	CCTGCAGG	1 cut(s)	3374
ScaI	AGTACT	2 cut(s)	696, 1801
SchI	GAGTC	8 cut(s)	496, 725, 929, 1232, 1238, 1346, 2877, 2996
ScrFI	CCNGG	6 cut(s)	721, 893, 1769, 2097, 2490, 2564
SdaI	CCTGCAGG	1 cut(s)	3374
SduI	GDGCHC	4 cut(s)	142, 858, 1866, 3025
SfaNI	GCATC	4 cut(s)	1270, 2368, 2672, 3011
SfcI	CTRYAG	6 cut(s)	451, 491, 659, 2667, 3370, 3416
Sfr274I	CTCGAG	1 cut(s)	2472
SfuI	TTCGAA	3 cut(s)	313, 2085, 2905
SinI	GGWCC	4 cut(s)	218, 1381, 2322, 2799
SlaI	CTCGAG	1 cut(s)	2472
SmiMI	CAYNNNNRTG	4 cut(s)	1856, 2317, 2367, 2819
SmlI	CTYRAG	6 cut(s)	565, 2472, 2632, 2728, 3059, 3284
SmoI	CTYRAG	6 cut(s)	565, 2472, 2632, 2728, 3059, 3284
Sse8387I	CCTGCAGG	1 cut(s)	3374
SsiI	CCGC	6 cut(s)	961, 1154, 1213, 2020, 2200, 3340
SspMI	CTAG	6 cut(s)	2048, 2627, 2648, 2696, 2855, 3299
StyD4I	CCNGG	6 cut(s)	719, 891, 1767, 2095, 2488, 2562
StyI	CCWWGG	5 cut(s)	394, 421, 477, 1477, 2033
TaaI	ACNGT	7 cut(s)	914, 1403, 1959, 1989, 3069, 3495, 3518
TaiI	ACGT	2 cut(s)	1626, 1945
TaqII	GACCGA	1 cut(s)	1336
TatI	WGTACW	7 cut(s)	200, 694, 864, 955, 1799, 2330, 2766
TscAI	CASTG	6 cut(s)	418, 465, 619, 1408, 3261, 3521
TseFI	GTSAC	3 cut(s)	610, 1972, 2078
Tsp45I	GTSAC	3 cut(s)	610, 1972, 2078
TspGWI	ACGGA	1 cut(s)	988
TspRI	CASTG	6 cut(s)	418, 465, 619, 1408, 3261, 3521
Tth111I	GACNNNGTC	1 cut(s)	1670
Vha464I	CTTAAG	1 cut(s)	2632
VneI	GTGCAC	2 cut(s)	1862, 3021
VpaK11BI	GGWCC	4 cut(s)	218, 1381, 2322, 2799
VspI	ATTAAT	2 cut(s)	777, 3009
XapI	RAATTY	5 cut(s)	74, 920, 1168, 1844, 2792
XbaI	TCTAGA	2 cut(s)	2695, 2854
XceI	RCATGY	4 cut(s)	1534, 1781, 2253, 2316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	2472
XspI	CTAG	6 cut(s)	2048, 2627, 2648, 2696, 2855, 3299
ZrmI	AGTACT	2 cut(s)	696, 1801
Zsp2I	ATGCAT	3 cut(s)	648, 1119, 1536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.