Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006484

Physical Location & Seq

Genomic Coordinates Forward (+)

72435937 .. 72441654

Gene Structure 5718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGACATGGGTTAGAGCAACGGGTGGAAGAGCTCCTACTGCCATTTTAACTTATCAAGATCAAGCCATGAAAGCTGCAATTGCAAAAGTTTTTCCAAATGCTAGACACAGGTTCTGTTTGTGGCATATATTGAAGAAACTCCTAGAAAAACTTGGTAGTTTTCTGAAAGAAAATGAAAATTTTATGCCGGTATTTAATGATTGTATCTACCATTCATGGACAGAGGAGGACTTTGAGAACAAATGGCAAAGTATGATTGAGATCTTTAATTTGGGAGATGATGACTGGCTTCAATCTTTGTTTAGAGACCGTAAGCAGTGGGTTCCTACTTACATGAGAGATACATTTTTTGCCGGAATGTCCACAACTCAAAGGTCAGAAAGTATTAATTCTTTTTTTGATAACTATGTAAACAAGAAAACTTCATTGAAGGAGTTTGTTGAACAATACAAAGAAGCTGCTCAAGATAGATTGGAAGTGGAAGTTCAGGCCGATTTCAATAATTTGCATAAGTTGCCTAGTTTAAAGTCTCCATCACCTTTCGGGTATCAAATGTCAAAGATCTACACACTTGAGATTTTTAAGAGGTTTGAAGAAGAAGTTTTGGGAATTTCAGCATGCAATCCTATAAAACAAAATGAGGATCCCATGACCATGACTTTTAGAGTTCAAGATTTTGGAATGAAAGAAGAGTTCATTGTAGCTGTGGATGGAAGCACGGGAGATGTATCTTGTTTATGTCGTCTACTTGAATACAAAGGTTTTCTTTGTAGGCATGCAATGGCTATATTGCAAAATTTTGGTATTTTTTGTATACCGAGATATACTTCGAGAGATGGAGAAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

284

Amino Acids

33.27

Weight (kDa)

5.84

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	2 - 47	8.8e-11	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15090 AT4G15090 AT4G15090 AT4G15090 AT4G15090
fragaria_vesca	FvH4_6g39512 FvH4_6g39512 FvH4_6g39512
malus_domestica	MD09G1139600.v1.1
prunus_persica	Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1
pyrus_communis	pycom09g06040
rosa_chinensis	RchiOBHm_Chr2g0153561
rosa_multiflora	Rmu_sc0002290.1_g000008 Rmu_sc0005507.1_g000038 Rmu_sc0017289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094920 Rroxscaffold_2G00134860
rosa_rugosa	Rorug02G0440100
rosa_samantha	Rh2AG503300 Rh2BG514000 Rh2CG489100 Rh2DG525700
rosa_wichuraiana	Rw2G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	748, 817
AclWI	GGATC	2 cut(s)	641, 654
AcsI	RAATTY	3 cut(s)	181, 612, 799
AgsI	TTSAA	8 cut(s)	136, 296, 433, 446, 502, 596, 674, 755
AluBI	AGCT	4 cut(s)	35, 77, 461, 707
AluI	AGCT	4 cut(s)	35, 77, 461, 707
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	2 cut(s)	303, 537
AlwI	GGATC	2 cut(s)	641, 654
AlwNI	CAGNNNCTG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	77, 461
ApoI	RAATTY	3 cut(s)	181, 612, 799
AseI	ATTAAT	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	64, 448
BccI	CCATC	3 cut(s)	544, 707, 833
BcoDI	GTCTC	2 cut(s)	303, 537
BfaI	CTAG	3 cut(s)	105, 146, 522
BglII	AGATCT	2 cut(s)	264, 564
BisI	GCNGC	2 cut(s)	78, 462
BlsI	GCNGC	2 cut(s)	79, 463
BmiI	GGNNCC	2 cut(s)	327, 648
BpuEI	CTTGAG	2 cut(s)	450, 596
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	303
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	789
Bse8I	GATNNNNATC	1 cut(s)	263
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	789
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	64, 448
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	191, 357
BsmAI	GTCTC	2 cut(s)	303, 537
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	61, 264, 564, 646
BspANI	GGCC	1 cut(s)	494
BspLI	GGNNCC	2 cut(s)	327, 648
BspPI	GGATC	2 cut(s)	641, 654
BspQI	GCTCTTC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	190
BssMI	GATC	4 cut(s)	61, 264, 564, 646
BssNAI	GTATAC	1 cut(s)	818
Bst1107I	GTATAC	1 cut(s)	818
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	25, 687
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	622, 780
BstF5I	GGATG	1 cut(s)	718
BstKTI	GATC	4 cut(s)	64, 267, 567, 649
BstMAI	GTCTC	2 cut(s)	303, 537
BstMBI	GATC	4 cut(s)	61, 264, 564, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 74, 83, 517
BstNSI	RCATGY	2 cut(s)	624, 782
BstV1I	GCAGC	2 cut(s)	64, 448
BstX2I	RGATCY	3 cut(s)	264, 564, 646
BstYI	RGATCY	3 cut(s)	264, 564, 646
BstZ17I	GTATAC	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	622, 780
CaiI	CAGNNNCTG	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	190
CviAII	CATG	8 cut(s)	9, 70, 219, 337, 621, 652, 658, 779
CviJI	RGCY	8 cut(s)	35, 68, 77, 292, 461, 494, 707, 788
CviKI_1	RGCY	8 cut(s)	35, 68, 77, 292, 461, 494, 707, 788
DpnI	GATC	4 cut(s)	63, 266, 566, 648
DpnII	GATC	4 cut(s)	61, 264, 564, 646
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	25, 687
EarI	CTCTTC	2 cut(s)	25, 687
Ecl136II	GAGCTC	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	8 cut(s)	12, 73, 222, 340, 624, 655, 661, 782
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FatI	CATG	8 cut(s)	8, 69, 218, 336, 620, 651, 657, 778
FblI	GTMKAC	2 cut(s)	748, 817
Fnu4HI	GCNGC	2 cut(s)	78, 462
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	78, 462
FspBI	CTAG	3 cut(s)	105, 146, 522
GluI	GCNGC	2 cut(s)	78, 462
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	2 cut(s)	191, 357
Hin1II	CATG	8 cut(s)	12, 73, 222, 340, 624, 655, 661, 782
HpaII	CCGG	2 cut(s)	191, 357
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	4 cut(s)	366, 415, 749, 818
Hpy188I	TCNGA	2 cut(s)	168, 382
Hpy188III	TCNNGA	4 cut(s)	59, 467, 674, 834
Hpy8I	GTNNAC	4 cut(s)	366, 415, 749, 818
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	6 cut(s)	80, 86, 511, 624, 782, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 74, 83, 517
Hsp92II	CATG	8 cut(s)	12, 73, 222, 340, 624, 655, 661, 782
Kzo9I	GATC	4 cut(s)	61, 264, 564, 646
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	97, 204, 274, 370, 476
Lsp1109I	GCAGC	2 cut(s)	64, 448
MaeI	CTAG	3 cut(s)	105, 146, 522
MalI	GATC	4 cut(s)	63, 266, 566, 648
MboI	GATC	4 cut(s)	61, 264, 564, 646
MboII	GAAGA	5 cut(s)	42, 148, 608, 611, 704
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	3 cut(s)	264, 564, 646
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	7 cut(s)	81, 181, 271, 391, 505, 612, 799
MnlI	CCTC	4 cut(s)	220, 223, 582, 637
MseI	TTAA	6 cut(s)	50, 198, 270, 390, 527, 585
MslI	CAYNNNNRTG	1 cut(s)	656
MspI	CCGG	2 cut(s)	191, 357
MunI	CAATTG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	41, 74, 83, 517
NdeII	GATC	4 cut(s)	61, 264, 564, 646
NlaIII	CATG	8 cut(s)	12, 73, 222, 340, 624, 655, 661, 782
NlaIV	GGNNCC	2 cut(s)	327, 648
NspI	RCATGY	2 cut(s)	624, 782
PaeI	GCATGC	2 cut(s)	624, 782
PciSI	GCTCTTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	79, 463
PshBI	ATTAAT	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	327, 648
PstNI	CAGNNNCTG	1 cut(s)	117
PsuI	RGATCY	3 cut(s)	264, 564, 646
RseI	CAYNNNNRTG	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	6 cut(s)	50, 198, 270, 390, 527, 585
SatI	GCNGC	2 cut(s)	78, 462
Sau3AI	GATC	4 cut(s)	61, 264, 564, 646
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	37, 79, 116, 380, 463, 544, 593, 709, 766
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	465, 575
SmoI	CTYRAG	2 cut(s)	465, 575
SphI	GCATGC	2 cut(s)	624, 782
Sse9I	AATT	7 cut(s)	81, 181, 271, 391, 505, 612, 799
SspMI	CTAG	3 cut(s)	105, 146, 522
SstI	GAGCTC	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	833
TasI	AATT	7 cut(s)	81, 181, 271, 391, 505, 612, 799
Tru1I	TTAA	6 cut(s)	50, 198, 270, 390, 527, 585
Tru9I	TTAA	6 cut(s)	50, 198, 270, 390, 527, 585
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	2 cut(s)	77, 461
TspDTI	ATGAA	6 cut(s)	86, 192, 207, 417, 688, 701
TspRI	CASTG	1 cut(s)	326
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	3 cut(s)	181, 612, 799
XceI	RCATGY	2 cut(s)	624, 782
XmiI	GTMKAC	2 cut(s)	748, 817
XspI	CTAG	3 cut(s)	105, 146, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.