Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006484

Physical Location & Seq

Genomic Coordinates Reverse (-)

75124237 .. 75127499

Gene Structure 3263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG525700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2511 bp

ATGATGGATAAAAATCAAAGATTGGTTGGAATGTTGGTGGACGGTCAAGACAATATGAATGATGGTAGGGTAAATGAGAATATGAATATGGTTCCTCTTGTGGAAGAAGCGCAAAATAGTGGTGGCGGGATCATCGGTTCTCCTAAAAGGGATGTTCAAGTGTTTGAGGGGGATGCAGATTTTGAACCGTGTAATGGCATTGAATTTGATTCACATGAGGCGGCATACTCATTTTATCAAGAATATGCCAAGTCCATGGGATTCACCACATCAATAAAAAACAGTCGGCGTTCTAAGAAATCAAAAGAATTTATTGATGCCAAATTTGCGTGTTCGCGATATGGAGTTACACCAGAATCTGATAGCGGGAGTAGTCGTCGACCGACTGTGAAAAAGACAGACTGCAAGGCCAGCATGCATGTCAAGAGAAGGGCAGATGGAAAGTGGATTATTCATGAATTCATTAAGGAGCATAATCATGAGCTTTTACCTGCTCTAGCATATCATTTTCGGATTCATAGGAATGTGAAGTTAGCTGAAAAGAATAATATGGACATCTTGCAAGCAGTCAGTGAACGAACTAGAAAGATGTATGTTGAGATGTCTCGACAATCTGGTGGATATCAATATACCGGCTTTCTTCGGACTGACACAAAGTATCAGTTTGATAAATGCCTGCATTTAGGTCTGGATGAGGGAGATGCTCAAGTAATGCTTGAATACTTTAAGCGTATCCAGAAGGACAACCCCAACTTCTTCTATGCTATAGATTTGAATGAGGAGCAGCGTGTGAGAAATTTGTTCTGGGTTGATGCAAAAAGTAGGAGTGATTATAAGAGTTTTAACGATGTTGTCTCTTTTGACACCTCTTACATCAAAATCAATGAAAAGTTGCCATTTGCTCCTTTTGTTGGGGTGAACCACCACTTTCAGCCAATGTTGCTTGGTTGTGCGTTAATTGCAGATGACAGTAAAGCAACATTTTTATGGTTGTTGACGACATGGGTTAGAGCAATGGGTGGGCTACATCCTAAAGTGATTATCTCTGATCAAGACGATAACTTGAAGGCAGCCATTGAAGAAGTCTTTCAAGATGCACGTCACTGCTTTTCACTTTGGAACATATTGGAAAAGATTCCTGAAGTTCTTGCTCCTGTAATCAAACAGCATGAGAATTTCTTGCCAAAGTTTCACAAGTGCATTTTTAAGTCATGGACAGAAGAACACTTTGACATGAGATGGTGGAAAATGGTTACCAGATTTGAACTTCAAGATGACGTATTGATTCGTTCGCTGTATGATGATCGTAAAAGATGGGTGCCTAGTTATTTGGGAGATACTTTTTTAGCTGGAATGTGTACAACTCAGCGTTCTGAGAGTATGAACTCTTTCTTTGACAAATACATACACAAGAAAATTACACTGAAAGAGTTTGTGAAACAATATGGGACAATTCTACAAAATAGGTATGATGAGGAAGCAATTGCGGATTTTGATACATGGCACAAACAGCCTGCATTAAAGTCTCCTTCTCCTTGGGAAAAACAAATGTCAACAGTTTACACGCATGCAGTATTCAGAAAGTTTCAAGTTGAGGTCTTAGGTGTAGTTGGCTGCCAGCCAAAGAAAGAACATGAAGATGGATCAACTGCCACATTCAGAGTTCAAGACTGTGAAAAGGAAGAATATTTTATGGTAACCTGGACTGAAACAAAGTCAGAGGTTTCTTGTTCCTGTCGTATGTTCGAGTACAAAGGTTTCCTTTGCAGACATTCACTGATTGTTCTCCAAATTTGTGGCCTTTCAAGCATCCCGCTGCATTATATTTTGAAGAGGTGGACAAAAGATGCAAAAAGCAGCCAATCGATCCTTGAAGGATCAGAGCTAGTACGTACTAGGGTGCAACGCTACAATGATTTATGTAAACGAGCCATTGAATTGAGTGAAGAAGGATCATTATCTGAAGAGACTTATAATATTGCTTTTCGCACACTCGTAGAAGCTTTGAAGAACTGTGTGAATGTAAATAACTCTAATGCAACTGTTGTGGACTTGAGTAGCAGTGTTCACGGTATTCGTGAAGCAGAAGAAGAAAATCAAGGAAGCCTTACTGCAAAACCAAGTAGGAAGAGAAATACAAATAGGAAAAGAAAGGTGCAAGCAGAGCAAGATGTCATTCTTGGCGAAGCACAAGACAGCTTGCAGCAAATGGAAAATTTGAGCTCCGATGGTATGGCCCTTAGTGGATATTATGGTGCTCAGCATGGACTGGTGCAGTTAAACTTAATGGAGCCACCCCATGACAGTTACTATGTTAACCAGGAAAGTATGCAGGGGCTGGGCCAACTGAATTCAATAGCACCCAGCGATGATGGTTTTTTTGGGACTCAACAAATTCATGGGCTGGGACAATTGGACTTCCGACCATCATCTAGTTTCAGTTATAGCTTACAGGATGAACCGCATTTGAGATCTGCAGAGTTGCATGGCAGTTCTTCAAGACATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

836

Amino Acids

96.24

Weight (kDa)

6.36

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	77 - 164	4.1e-29	FAR1 DNA-binding domain
MULE	PF10551	284 - 377	4.7e-20	MULE transposase domain
SWIM	PF04434	574 - 599	4e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15090 AT4G15090 AT4G15090 AT4G15090 AT4G15090
fragaria_vesca	FvH4_6g39512 FvH4_6g39512 FvH4_6g39512
malus_domestica	MD09G1139600.v1.1
prunus_persica	Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1
pyrus_communis	pycom09g06040
rosa_chinensis	RchiOBHm_Chr2g0153561
rosa_multiflora	Rmu_sc0002290.1_g000008 Rmu_sc0005507.1_g000038 Rmu_sc0017289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094920 Rroxscaffold_2G00134860
rosa_rugosa	Rorug02G0440100
rosa_samantha	Rh2AG503300 Rh2BG514000 Rh2CG489100 Rh2DG525700
rosa_wichuraiana	Rw2G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	834, 1974
Acc36I	ACCTGC	1 cut(s)	499
AccB1I	GGYRCC	1 cut(s)	1318
AccI	GTMKAC	1 cut(s)	379
AccII	CGCG	1 cut(s)	337
AciI	CCGC	6 cut(s)	126, 221, 366, 1487, 1814, 2462
AclWI	GGATC	5 cut(s)	137, 1651, 1861, 1885, 1960
AcuI	CTGAAG	2 cut(s)	1161, 1983
AfaI	GTAC	4 cut(s)	1360, 1751, 1890, 1894
AfiI	CCNNNNNNNGG	2 cut(s)	194, 911
AjiI	CACGTC	1 cut(s)	1100
AjnI	CCWGG	2 cut(s)	1700, 2319
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	8 cut(s)	484, 536, 1349, 1885, 2003, 2199, 2223, 2448
AluI	AGCT	8 cut(s)	484, 536, 1349, 1885, 2003, 2199, 2223, 2448
Alw21I	GWGCWC	2 cut(s)	2225, 2260
Alw26I	GTCTC	4 cut(s)	609, 859, 1530, 1961
AlwI	GGATC	5 cut(s)	137, 1651, 1861, 1885, 1960
AlwNI	CAGNNNCTG	2 cut(s)	359, 2338
AoxI	GGCC	4 cut(s)	408, 1798, 2235, 2341
ApeKI	GCWGC	6 cut(s)	784, 1070, 1614, 1816, 1857, 2203
Asp700I	GAANNNNTTC	3 cut(s)	1086, 1134, 1388
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	2236, 2341
AsuHPI	GGTGA	2 cut(s)	256, 928
BanI	GGYRCC	1 cut(s)	1318
BanII	GRGCYC	1 cut(s)	2225
Bbv12I	GWGCWC	2 cut(s)	2225, 2260
BbvI	GCAGC	6 cut(s)	796, 1082, 1601, 1803, 1869, 2215
BccI	CCATC	8 cut(s)	56, 431, 1233, 1308, 1634, 2222, 2366, 2434
BciT130I	CCWGG	2 cut(s)	1702, 2321
BciVI	GTATCC	1 cut(s)	743
BclI	TGATCA	1 cut(s)	1048
BcoDI	GTCTC	4 cut(s)	609, 859, 1530, 1961
BfaI	CTAG	6 cut(s)	497, 582, 1323, 1886, 1896, 2433
BfmI	CTRYAG	2 cut(s)	765, 2475
BfuAI	ACCTGC	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	743
BglII	AGATCT	1 cut(s)	2471
BisI	GCNGC	7 cut(s)	222, 785, 1071, 1615, 1817, 1858, 2204
BlpI	GCTNAGC	1 cut(s)	2259
BlsI	GCNGC	7 cut(s)	223, 786, 1072, 1616, 1818, 1859, 2205
Bme1390I	CCNGG	2 cut(s)	1702, 2321
BmgBI	CACGTC	1 cut(s)	1100
BmgT120I	GGNCC	2 cut(s)	2236, 2341
BmiI	GGNNCC	3 cut(s)	93, 1320, 2292
BmrFI	CCNGG	2 cut(s)	1702, 2321
BmsI	GCATC	7 cut(s)	163, 307, 691, 802, 1084, 1818, 1837
Bpu1102I	GCTNAGC	1 cut(s)	2259
BpuEI	CTTGAG	2 cut(s)	690, 2074
Bsa29I	ATCGAT	1 cut(s)	1865
BsaAI	YACGTR	1 cut(s)	1892
BsaBI	GATNNNNATC	2 cut(s)	12, 1957
BsaJI	CCNNGG	2 cut(s)	255, 1535
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 911
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	2274
Bse3DI	GCAATG	1 cut(s)	1020
Bse8I	GATNNNNATC	2 cut(s)	12, 1957
BseBI	CCWGG	2 cut(s)	1702, 2321
BseCI	ATCGAT	1 cut(s)	1865
BseDI	CCNNGG	2 cut(s)	255, 1535
BseGI	GGATG	6 cut(s)	157, 178, 697, 1027, 1809, 2461
BseJI	GATNNNNATC	2 cut(s)	12, 1957
BseLI	CCNNNNNNNGG	2 cut(s)	194, 911
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	3 cut(s)	1365, 1379, 2273
BseNI	ACTGG	1 cut(s)	2274
BseRI	GAGGAG	1 cut(s)	794
BseXI	GCAGC	6 cut(s)	796, 1082, 1601, 1803, 1869, 2215
BseYI	CCCAGC	3 cut(s)	2338, 2363, 2404
BsgI	GTGCAG	1 cut(s)	2294
Bsh1236I	CGCG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	383
BshFI	GGCC	4 cut(s)	410, 1800, 2237, 2343
BshNI	GGYRCC	1 cut(s)	1318
BshVI	ATCGAT	1 cut(s)	1865
BsiEI	CGRYCG	1 cut(s)	383
BsiHKAI	GWGCWC	2 cut(s)	2225, 2260
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	3 cut(s)	1462, 2398, 2421
BslI	CCNNNNNNNGG	2 cut(s)	194, 911
BsmAI	GTCTC	4 cut(s)	609, 859, 1530, 1961
BsmFI	GGGAC	3 cut(s)	1462, 2398, 2421
BsnI	GGCC	4 cut(s)	410, 1800, 2237, 2343
Bsp1286I	GDGCHC	2 cut(s)	2225, 2260
Bsp1407I	TGTACA	1 cut(s)	1358
Bsp143I	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
Bsp1720I	GCTNAGC	1 cut(s)	2259
Bsp19I	CCATGG	1 cut(s)	255
Bsp68I	TCGCGA	1 cut(s)	337
BspACI	CCGC	6 cut(s)	126, 221, 366, 1487, 1814, 2462
BspANI	GGCC	4 cut(s)	410, 1800, 2237, 2343
BspCNI	CTCAG	3 cut(s)	1366, 1378, 2272
BspDI	ATCGAT	1 cut(s)	1865
BspFNI	CGCG	1 cut(s)	337
BspHI	TCATGA	3 cut(s)	454, 478, 2507
BspLI	GGNNCC	3 cut(s)	93, 1320, 2292
BspMAI	CTGCAG	1 cut(s)	2479
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	5 cut(s)	137, 1651, 1861, 1885, 1960
BspT107I	GGYRCC	1 cut(s)	1318
BsrDI	GCAATG	1 cut(s)	1020
BsrFI	RCCGGY	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	1358
BsrI	ACTGG	1 cut(s)	2274
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	255, 1535
BssMI	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
BssT1I	CCWWGG	2 cut(s)	255, 1535
Bst2UI	CCWGG	2 cut(s)	1702, 2321
Bst6I	CTCTTC	3 cut(s)	1826, 1959, 2123
BstAUI	TGTACA	1 cut(s)	1358
BstBAI	YACGTR	1 cut(s)	1892
BstC8I	GCNNGC	9 cut(s)	412, 416, 564, 677, 1515, 1569, 1619, 2160, 2201
BstDEI	CTNAG	6 cut(s)	294, 1365, 1374, 1600, 2240, 2259
BstDSI	CCRYGG	1 cut(s)	255
BstEII	GGTNACC	2 cut(s)	1252, 1696
BstF5I	GGATG	6 cut(s)	157, 178, 697, 1027, 1809, 2461
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	8 cut(s)	132, 1051, 1306, 1646, 1869, 1880, 1955, 2474
BstMAI	GTCTC	4 cut(s)	609, 859, 1530, 1961
BstMBI	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
BstMCI	CGRYCG	1 cut(s)	383
BstMWI	GCNNNNNNNGC	7 cut(s)	326, 411, 940, 959, 1510, 1806, 2164
BstNI	CCWGG	2 cut(s)	1702, 2321
BstNSI	RCATGY	3 cut(s)	418, 422, 1571
BstPI	GGTNACC	2 cut(s)	1252, 1696
BstSCI	CCNGG	2 cut(s)	1700, 2319
BstSFI	CTRYAG	2 cut(s)	765, 2475
BstSNI	TACGTA	1 cut(s)	1892
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	6 cut(s)	796, 1082, 1601, 1803, 1869, 2215
BstX2I	RGATCY	1 cut(s)	2471
BstXI	CCANNNNNNTGG	2 cut(s)	256, 1796
BstYI	RGATCY	1 cut(s)	2471
Bsu15I	ATCGAT	1 cut(s)	1865
BsuI	GTATCC	1 cut(s)	743
BsuRI	GGCC	4 cut(s)	410, 1800, 2237, 2343
BsuTUI	ATCGAT	1 cut(s)	1865
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	2382
BtrI	CACGTC	1 cut(s)	1100
BtsCI	GGATG	6 cut(s)	157, 178, 697, 1027, 1809, 2461
BtsI	GCAGTG	2 cut(s)	1102, 2068
BtsIMutI	CAGTG	5 cut(s)	577, 1102, 1421, 1775, 2068
BtuMI	TCGCGA	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	9 cut(s)	412, 416, 564, 677, 1515, 1569, 1619, 2160, 2201
CaiI	CAGNNNCTG	2 cut(s)	359, 2338
CciI	TCATGA	3 cut(s)	454, 478, 2507
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	2236, 2341
ClaI	ATCGAT	1 cut(s)	1865
Csp6I	GTAC	4 cut(s)	1359, 1750, 1889, 1893
CspCI	CAANNNNNGTGG	2 cut(s)	2028, 2063
CviQI	GTAC	4 cut(s)	1359, 1750, 1889, 1893
DdeI	CTNAG	6 cut(s)	294, 1365, 1374, 1600, 2240, 2259
DpnI	GATC	8 cut(s)	131, 1050, 1305, 1645, 1868, 1879, 1954, 2473
DpnII	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
Eam1104I	CTCTTC	3 cut(s)	1826, 1959, 2123
EarI	CTCTTC	3 cut(s)	1826, 1959, 2123
Ecl136II	GAGCTC	1 cut(s)	2223
Eco105I	TACGTA	1 cut(s)	1892
Eco130I	CCWWGG	2 cut(s)	255, 1535
Eco24I	GRGCYC	1 cut(s)	2225
Eco32I	GATATC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	2223
Eco57I	CTGAAG	2 cut(s)	1161, 1983
Eco91I	GGTNACC	2 cut(s)	1252, 1696
EcoICRI	GAGCTC	1 cut(s)	2223
EcoO65I	GGTNACC	2 cut(s)	1252, 1696
EcoRI	GAATTC	2 cut(s)	458, 2350
EcoRII	CCWGG	2 cut(s)	1700, 2319
EcoRV	GATATC	1 cut(s)	623
EcoT14I	CCWWGG	2 cut(s)	255, 1535
EcoT22I	ATGCAT	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	2225
ErhI	CCWWGG	2 cut(s)	255, 1535
FalI	AAGNNNNNCTT	6 cut(s)	699, 731, 1746, 1778, 2091, 2123
FaqI	GGGAC	3 cut(s)	1462, 2398, 2421
FauI	CCCGC	3 cut(s)	119, 359, 1821
FbaI	TGATCA	1 cut(s)	1048
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	7 cut(s)	222, 785, 1071, 1615, 1817, 1858, 2204
FokI	GGATG	6 cut(s)	164, 185, 704, 1014, 1796, 2468
FriOI	GRGCYC	1 cut(s)	2225
Fsp4HI	GCNGC	7 cut(s)	222, 785, 1071, 1615, 1817, 1858, 2204
FspBI	CTAG	6 cut(s)	497, 582, 1323, 1886, 1896, 2433
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	7 cut(s)	222, 785, 1071, 1615, 1817, 1858, 2204
GsaI	CCCAGC	3 cut(s)	2342, 2367, 2408
HaeIII	GGCC	4 cut(s)	410, 1800, 2237, 2343
HapII	CCGG	1 cut(s)	633
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	4 cut(s)	380, 996, 1554, 2317
HindII	GTYRAC	4 cut(s)	380, 996, 1554, 2317
HindIII	AAGCTT	1 cut(s)	2001
HinfI	GANTC	7 cut(s)	209, 261, 356, 514, 1135, 1285, 2386
HpaI	GTTAAC	1 cut(s)	2317
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	2 cut(s)	256, 928
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	6 cut(s)	423, 733, 1060, 1539, 1868, 1943
HpyCH4IV	ACGT	3 cut(s)	1099, 1278, 1891
HpyF10VI	GCNNNNNNNGC	7 cut(s)	326, 411, 940, 959, 1510, 1806, 2164
HpyF3I	CTNAG	6 cut(s)	294, 1365, 1374, 1600, 2240, 2259
HpySE526I	ACGT	3 cut(s)	1099, 1278, 1891
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	1048
KspAI	GTTAAC	1 cut(s)	2317
Kzo9I	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
LmnI	GCTCC	6 cut(s)	469, 781, 907, 1156, 2228, 2290
Lsp1109I	GCAGC	6 cut(s)	796, 1082, 1601, 1803, 1869, 2215
LweI	GCATC	7 cut(s)	163, 307, 691, 802, 1084, 1818, 1837
MaeI	CTAG	6 cut(s)	497, 582, 1323, 1886, 1896, 2433
MaeII	ACGT	3 cut(s)	1099, 1278, 1891
MaeIII	GTNAC	5 cut(s)	346, 1100, 1252, 1696, 2306
MalI	GATC	8 cut(s)	131, 1050, 1305, 1645, 1868, 1879, 1954, 2473
MboI	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
MfeI	CAATTG	2 cut(s)	1482, 2411
MflI	RGATCY	1 cut(s)	2471
MhlI	GDGCHC	2 cut(s)	2225, 2260
MlyI	GAGTC	1 cut(s)	2380
MmeI	TCCRAC	2 cut(s)	7, 2446
Mph1103I	ATGCAT	1 cut(s)	420
MroXI	GAANNNNTTC	3 cut(s)	1086, 1134, 1388
MseI	TTAA	9 cut(s)	465, 726, 843, 956, 1206, 1520, 2279, 2285, 2316
MslI	CAYNNNNRTG	4 cut(s)	477, 522, 985, 1638
MspA1I	CMGCKG	1 cut(s)	1816
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	1702, 2321
MunI	CAATTG	2 cut(s)	1482, 2411
MvaI	CCWGG	2 cut(s)	1702, 2321
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	7 cut(s)	326, 411, 940, 959, 1510, 1806, 2164
NcoI	CCATGG	1 cut(s)	255
NdeII	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
NlaIV	GGNNCC	3 cut(s)	93, 1320, 2292
NmuCI	GTSAC	1 cut(s)	1100
NruI	TCGCGA	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	3 cut(s)	418, 422, 1571
PaeI	GCATGC	2 cut(s)	418, 1571
PagI	TCATGA	3 cut(s)	454, 478, 2507
PdmI	GAANNNNTTC	3 cut(s)	1086, 1134, 1388
PfeI	GAWTC	6 cut(s)	209, 261, 356, 514, 1135, 1285
PkrI	GCNGC	7 cut(s)	223, 786, 1072, 1616, 1818, 1859, 2205
PleI	GAGTC	1 cut(s)	2380
PpsI	GAGTC	1 cut(s)	2380
Ppu21I	YACGTR	1 cut(s)	1892
PsiI	TTATAA	2 cut(s)	834, 1974
Psp124BI	GAGCTC	1 cut(s)	2225
Psp6I	CCWGG	2 cut(s)	1700, 2319
PspEI	GGTNACC	2 cut(s)	1252, 1696
PspFI	CCCAGC	3 cut(s)	2338, 2363, 2404
PspGI	CCWGG	2 cut(s)	1700, 2319
PspN4I	GGNNCC	3 cut(s)	93, 1320, 2292
PspPI	GGNCC	2 cut(s)	2236, 2341
PstI	CTGCAG	1 cut(s)	2479
PstNI	CAGNNNCTG	2 cut(s)	359, 2338
PsuI	RGATCY	1 cut(s)	2471
RruI	TCGCGA	1 cut(s)	337
RsaI	GTAC	4 cut(s)	1360, 1751, 1890, 1894
RsaNI	GTAC	4 cut(s)	1359, 1750, 1889, 1893
RseI	CAYNNNNRTG	4 cut(s)	477, 522, 985, 1638
SacI	GAGCTC	1 cut(s)	2225
SalI	GTCGAC	1 cut(s)	378
SaqAI	TTAA	9 cut(s)	465, 726, 843, 956, 1206, 1520, 2279, 2285, 2316
SatI	GCNGC	7 cut(s)	222, 785, 1071, 1615, 1817, 1858, 2204
Sau3AI	GATC	8 cut(s)	129, 1048, 1303, 1643, 1866, 1877, 1952, 2471
Sau96I	GGNCC	2 cut(s)	2236, 2341
SchI	GAGTC	1 cut(s)	2380
ScrFI	CCNGG	2 cut(s)	1702, 2321
SduI	GDGCHC	2 cut(s)	2225, 2260
SfaNI	GCATC	7 cut(s)	163, 307, 691, 802, 1084, 1818, 1837
SfcI	CTRYAG	2 cut(s)	765, 2475
SmiMI	CAYNNNNRTG	4 cut(s)	477, 522, 985, 1638
SmlI	CTYRAG	2 cut(s)	705, 2053
SmoI	CTYRAG	2 cut(s)	705, 2053
SnaBI	TACGTA	1 cut(s)	1892
SphI	GCATGC	2 cut(s)	418, 1571
SsiI	CCGC	6 cut(s)	126, 221, 366, 1487, 1814, 2462
SspI	AATATT	2 cut(s)	1688, 1978
SspMI	CTAG	6 cut(s)	497, 582, 1323, 1886, 1896, 2433
SstI	GAGCTC	1 cut(s)	2225
StyD4I	CCNGG	2 cut(s)	1700, 2319
StyI	CCWWGG	2 cut(s)	255, 1535
TaiI	ACGT	3 cut(s)	1102, 1281, 1894
TaqI	TCGA	4 cut(s)	379, 607, 1746, 1865
TaqII	GACCGA	1 cut(s)	397
TatI	WGTACW	2 cut(s)	1358, 1749
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	6 cut(s)	209, 261, 356, 514, 1135, 1285
Tru1I	TTAA	9 cut(s)	465, 726, 843, 956, 1206, 1520, 2279, 2285, 2316
Tru9I	TTAA	9 cut(s)	465, 726, 843, 956, 1206, 1520, 2279, 2285, 2316
TscAI	CASTG	5 cut(s)	577, 1109, 1428, 1782, 2068
TseFI	GTSAC	1 cut(s)	1100
TseI	GCWGC	6 cut(s)	784, 1070, 1614, 1816, 1857, 2203
Tsp45I	GTSAC	1 cut(s)	1100
TspRI	CASTG	5 cut(s)	577, 1109, 1428, 1782, 2068
XceI	RCATGY	3 cut(s)	418, 422, 1571
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	3 cut(s)	1086, 1134, 1388
XspI	CTAG	6 cut(s)	497, 582, 1323, 1886, 1896, 2433
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.