Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002290.1

Orthogroup ID

OG0006484

Physical Location & Seq

Genomic Coordinates Reverse (-)

41271 .. 42503

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002290.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgagcgctgctaatgattttcatgtagttggagtacaaacaagtaaaatatatgctgcagtggctaaacaacatgggggatatcaaaatattggatttacagaaaagattcttagaaatcattttgataaagtgcggcgtttggtgctagctgcaggggatgctaatgctatgcttgacctttttatgcacatgcaagaagagaatcccaatctcttttatgcaatggactttgatgaggaccaacatttgagaaatattttttgggttgatgcaaaaggtcgtgaagattataagatttttggagacgttgtttcttttgatactacatatatcactaacaagtacaagatgccatttgctccgtttattggtgtgaacaaccattttcagtctacactacttggatgtgtgttgcttggagacgagactgcttcaacttttgtttggttaatgcaaacatggctgagagcaatgggaggaaaaccaccgagtgctatattaactgatcaagacaaagccatgaaatcagccattgcagaggtatttccaaattctcgacatcacttttgtttatggcatatattaatgaaaatccctcaaaaacttggtcaagtaatcaaagaaaatgaagattttatggagatatttgataaatacatttacaattcatggactagtgaagagtttgagaaaggattgtgggatatgattgacagatctgaaagcatcaattctttcttcgataaatatgtgggtaagaagactactttgaaagagtttgttggacaatacaatgtggatttacaggatagacaagaacaagaagctcaagctgatttcagaacttggcacacactacctgctttcttgtctccttcaccttttgagagaaaaatgtccaaaatttacacacatgaaatttttaagaagtttcaagtagaggttttaggagctagaggatgctatcctatagaattgaaggaagacaatgtgactaaaacatttgaagttgaagattttcagaagaaatatgatttcaaggtggaatgggatgcaagaaagaaggagatttattgtagctgtcacctatttgaatataacgggtgtctttgtggacatgctcttgctgtgtttcactctttggaagttttcaaaattccatctcattatatattagagcggtggacaaaaaatgtgaagaccatatacaattatacaacagtaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

410

Amino Acids

47.97

Weight (kDa)

6.12

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15090 AT4G15090 AT4G15090 AT4G15090 AT4G15090
fragaria_vesca	FvH4_6g39512 FvH4_6g39512 FvH4_6g39512
malus_domestica	MD09G1139600.v1.1
prunus_persica	Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1
pyrus_communis	pycom09g06040
rosa_chinensis	RchiOBHm_Chr2g0153561
rosa_multiflora	Rmu_sc0002290.1_g000008 Rmu_sc0005507.1_g000038 Rmu_sc0017289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094920 Rroxscaffold_2G00134860
rosa_rugosa	Rorug02G0440100
rosa_samantha	Rh2AG503300 Rh2BG514000 Rh2CG489100 Rh2DG525700
rosa_wichuraiana	Rw2G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	871
AccBSI	CCGCTC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	2 cut(s)	136, 1183
AcsI	RAATTY	4 cut(s)	553, 906, 921, 1158
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	36, 347, 1227
AfeI	AGCGCT	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	9 cut(s)	438, 775, 938, 982, 1010, 1016, 1042, 1097, 1156
AhlI	ACTAGT	1 cut(s)	677
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	5 cut(s)	152, 830, 836, 956, 1083
AluI	AGCT	5 cut(s)	152, 830, 836, 956, 1083
Alw26I	GTCTC	4 cut(s)	300, 417, 422, 879
Aor51HI	AGCGCT	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	8, 56, 152
ApoI	RAATTY	4 cut(s)	553, 906, 921, 1158
ArsI	GACNNNNNNTTYG	4 cut(s)	552, 584, 595, 627
AseI	ATTAAT	1 cut(s)	587
Asp700I	GAANNNNTTC	2 cut(s)	108, 1020
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	873, 1079
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	241
BaeI	ACNNNNGTAYC	1 cut(s)	1209
BarI	GAAGNNNNNNTAC	2 cut(s)	1193, 1225
BbsI	GAAGAC	3 cut(s)	770, 993, 1208
BbvI	GCAGC	2 cut(s)	43, 139
BccI	CCATC	1 cut(s)	1171
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	4 cut(s)	300, 417, 422, 879
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	3 cut(s)	149, 678, 957
BfmI	CTRYAG	3 cut(s)	57, 153, 972
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	871
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	4 cut(s)	9, 57, 137, 153
BlsI	GCNGC	4 cut(s)	10, 58, 138, 154
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmsI	GCATC	6 cut(s)	151, 262, 342, 738, 953, 1045
BmtI	GCTAGC	1 cut(s)	152
BpiI	GAAGAC	3 cut(s)	770, 993, 1208
BpuEI	CTTGAG	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse3DI	GCAATG	3 cut(s)	231, 480, 534
BseGI	GGATG	4 cut(s)	166, 413, 968, 1060
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	3 cut(s)	231, 480, 534
BseMII	CTCAG	1 cut(s)	458
BseXI	GCAGC	2 cut(s)	43, 139
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	4 cut(s)	300, 417, 422, 879
BsmBI	CGTCTC	2 cut(s)	300, 417
Bsp143I	GATC	2 cut(s)	508, 719
BspACI	CCGC	2 cut(s)	136, 1183
BspCNI	CTCAG	1 cut(s)	459
BspMAI	CTGCAG	2 cut(s)	61, 157
BspMI	ACCTGC	1 cut(s)	871
BspOI	GCTAGC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	1183
BsrDI	GCAATG	3 cut(s)	231, 480, 534
BssMI	GATC	2 cut(s)	508, 719
Bst4CI	ACNGT	1 cut(s)	1225
Bst6I	CTCTTC	2 cut(s)	195, 678
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	113, 467
BstF5I	GGATG	4 cut(s)	166, 413, 968, 1060
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	511, 722
BstMAI	GTCTC	4 cut(s)	300, 417, 422, 879
BstMBI	GATC	2 cut(s)	508, 719
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 145, 161, 463
BstNSI	RCATGY	2 cut(s)	196, 1124
BstSFI	CTRYAG	3 cut(s)	57, 153, 972
BstV1I	GCAGC	2 cut(s)	43, 139
BstV2I	GAAGAC	3 cut(s)	770, 993, 1208
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	166, 413, 968, 1060
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	871
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	35, 346, 1226
CviAII	CATG	8 cut(s)	23, 74, 193, 462, 523, 672, 917, 1121
CviJI	RGCY	9 cut(s)	65, 152, 466, 521, 533, 830, 836, 956, 1083
CviKI_1	RGCY	9 cut(s)	65, 152, 466, 521, 533, 830, 836, 956, 1083
CviQI	GTAC	3 cut(s)	35, 346, 1226
DdeI	CTNAG	2 cut(s)	113, 467
DpnI	GATC	2 cut(s)	510, 721
DpnII	GATC	2 cut(s)	508, 719
DraIII	CACNNNGTG	1 cut(s)	494
Eam1104I	CTCTTC	2 cut(s)	195, 678
EarI	CTCTTC	2 cut(s)	195, 678
Eco32I	GATATC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	241
Eco47III	AGCGCT	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	83
Esp3I	CGTCTC	2 cut(s)	300, 417
FaeI	CATG	8 cut(s)	26, 77, 196, 465, 526, 675, 920, 1124
FatI	CATG	8 cut(s)	22, 73, 192, 461, 522, 671, 916, 1120
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	9, 57, 137, 153
FokI	GGATG	4 cut(s)	173, 420, 975, 1067
Fsp4HI	GCNGC	4 cut(s)	9, 57, 137, 153
FspBI	CTAG	3 cut(s)	149, 678, 957
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	4 cut(s)	9, 57, 137, 153
HaeII	RGCGCY	1 cut(s)	9
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	8 cut(s)	26, 77, 196, 465, 526, 675, 920, 1124
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	109, 205
HphI	GGTGA	2 cut(s)	873, 1079
Hpy166II	GTNNAC	4 cut(s)	379, 396, 1118, 1188
Hpy188I	TCNGA	3 cut(s)	724, 845, 1026
Hpy188III	TCNNGA	3 cut(s)	284, 512, 558
Hpy8I	GTNNAC	4 cut(s)	379, 396, 1118, 1188
HpyAV	CCTTC	3 cut(s)	888, 976, 1060
HpyCH4III	ACNGT	1 cut(s)	1225
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	9 cut(s)	59, 155, 190, 196, 224, 275, 457, 539, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 145, 161, 463
HpyF3I	CTNAG	2 cut(s)	113, 467
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	8 cut(s)	26, 77, 196, 465, 526, 675, 920, 1124
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	508, 719
LmnI	GCTCC	2 cut(s)	367, 953
LpnPI	CCDG	3 cut(s)	141, 794, 876
Lsp1109I	GCAGC	2 cut(s)	43, 139
LweI	GCATC	6 cut(s)	151, 262, 342, 738, 953, 1045
MaeI	CTAG	3 cut(s)	149, 678, 957
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	994, 1085
MalI	GATC	2 cut(s)	510, 721
MbiI	CCGCTC	1 cut(s)	1183
MboI	GATC	2 cut(s)	508, 719
MflI	RGATCY	1 cut(s)	719
MluCI	AATT	8 cut(s)	553, 667, 733, 906, 921, 977, 1158, 1213
MmeI	TCCRAC	2 cut(s)	10, 766
MnlI	CCTC	6 cut(s)	232, 473, 535, 609, 937, 953
MroXI	GAANNNNTTC	2 cut(s)	108, 1020
MseI	TTAA	4 cut(s)	452, 503, 587, 927
MwoI	GCNNNNNNNGC	4 cut(s)	62, 145, 161, 463
NdeII	GATC	2 cut(s)	508, 719
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	8 cut(s)	26, 77, 196, 465, 526, 675, 920, 1124
NmuCI	GTSAC	2 cut(s)	994, 1085
NspI	RCATGY	2 cut(s)	196, 1124
PdmI	GAANNNNTTC	2 cut(s)	108, 1020
PfeI	GAWTC	2 cut(s)	109, 205
PkrI	GCNGC	4 cut(s)	10, 58, 138, 154
PshBI	ATTAAT	1 cut(s)	587
PsiI	TTATAA	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	2 cut(s)	61, 157
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	3 cut(s)	36, 347, 1227
RsaNI	GTAC	3 cut(s)	35, 346, 1226
SaqAI	TTAA	4 cut(s)	452, 503, 587, 927
SatI	GCNGC	4 cut(s)	9, 57, 137, 153
Sau3AI	GATC	2 cut(s)	508, 719
Sau96I	GGNCC	1 cut(s)	241
SfaNI	GCATC	6 cut(s)	151, 262, 342, 738, 953, 1045
SfcI	CTRYAG	3 cut(s)	57, 153, 972
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	8 cut(s)	553, 667, 733, 906, 921, 977, 1158, 1213
SsiI	CCGC	2 cut(s)	136, 1183
SspI	AATATT	2 cut(s)	91, 259
SspMI	CTAG	3 cut(s)	149, 678, 957
TaaI	ACNGT	1 cut(s)	1225
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	559, 744
TasI	AATT	8 cut(s)	553, 667, 733, 906, 921, 977, 1158, 1213
TatI	WGTACW	2 cut(s)	34, 345
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	109, 205
Tru1I	TTAA	4 cut(s)	452, 503, 587, 927
Tru9I	TTAA	4 cut(s)	452, 503, 587, 927
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	2 cut(s)	994, 1085
TseI	GCWGC	3 cut(s)	8, 56, 152
Tsp45I	GTSAC	2 cut(s)	994, 1085
TspDTI	ATGAA	6 cut(s)	11, 539, 605, 645, 660, 933
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	587
XapI	RAATTY	4 cut(s)	553, 906, 921, 1158
XceI	RCATGY	2 cut(s)	196, 1124
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	108, 1020
XspI	CTAG	3 cut(s)	149, 678, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.