Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005507.1

Orthogroup ID

OG0006484

Physical Location & Seq

Genomic Coordinates Reverse (-)

160263 .. 160875

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005507.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggatctagatgaagaacaacacttgaaaaatgtgttttgggttgatgcaaaaggccgggaggactacaagatttttggagatgtggtttcttttgatacgacatatattacaaacaaatataagatgccttttgctccttttattggagtgaataatcatttccagtctacattacttggttgtgcactccttgcagatgaaactacatcgacgttcgtttggttaatggagacatgggttagagcaatgggtggaagaactcctactgccattttaactgatcaagatcaagccatgaaagttgcaattgcaaaagtttttccaaatgctagacacaggttctgtttatggcatatattgaagaagctcccagaaaaacttgaggaggactttgagaacaaatggcaaagtatgattgagatctttaatttgggagatgatgactggcttcaatctttgtttagagaccgtaagcagtggtttcctacttatatgagagatacattttttgccggaatgtccacaactcaaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

179

Amino Acids

21.13

Weight (kDa)

5.57

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15090 AT4G15090 AT4G15090 AT4G15090 AT4G15090
fragaria_vesca	FvH4_6g39512 FvH4_6g39512 FvH4_6g39512
malus_domestica	MD09G1139600.v1.1
prunus_persica	Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1 Prupe.3G186100_v2.0.a1
pyrus_communis	pycom09g06040
rosa_chinensis	RchiOBHm_Chr2g0153561
rosa_multiflora	Rmu_sc0002290.1_g000008 Rmu_sc0005507.1_g000038 Rmu_sc0017289.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094920 Rroxscaffold_2G00134860
rosa_rugosa	Rorug02G0440100
rosa_samantha	Rh2AG503300 Rh2BG514000 Rh2CG489100 Rh2DG525700
rosa_wichuraiana	Rw2G041320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	28, 364, 455
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	2 cut(s)	227, 462
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
Bbv12I	GWGCWC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	227, 462
BfaI	CTAG	2 cut(s)	8, 333
BglII	AGATCT	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	37, 117
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	59
BsaBI	GATNNNNATC	2 cut(s)	288, 422
BsaI	GGTCTC	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	166, 452
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	2 cut(s)	288, 422
BseJI	GATNNNNATC	2 cut(s)	288, 422
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	166, 452
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	58, 516
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	227, 462
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	4, 283, 289, 423
BspANI	GGCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	166, 452
BssMI	GATC	4 cut(s)	4, 283, 289, 423
Bst4CI	ACNGT	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstKTI	GATC	4 cut(s)	7, 286, 292, 426
BstMAI	GTCTC	2 cut(s)	227, 462
BstMBI	GATC	4 cut(s)	4, 283, 289, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	4, 423
BstYI	RGATCY	2 cut(s)	4, 423
BsuRI	GGCC	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	485
CaiI	CAGNNNCTG	1 cut(s)	345
CviAII	CATG	2 cut(s)	237, 298
CviJI	RGCY	4 cut(s)	57, 296, 370, 451
CviKI_1	RGCY	4 cut(s)	57, 296, 370, 451
DpnI	GATC	4 cut(s)	6, 285, 291, 425
DpnII	GATC	4 cut(s)	4, 283, 289, 423
Eco31I	GGTCTC	1 cut(s)	462
FaeI	CATG	2 cut(s)	240, 301
FatI	CATG	2 cut(s)	236, 297
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	170
FspBI	CTAG	2 cut(s)	8, 333
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	58, 516
Hin1II	CATG	2 cut(s)	240, 301
HpaII	CCGG	2 cut(s)	58, 516
Hpy166II	GTNNAC	3 cut(s)	171, 188, 525
Hpy188III	TCNNGA	2 cut(s)	8, 287
Hpy8I	GTNNAC	3 cut(s)	171, 188, 525
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	50, 188, 197, 308, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	240, 301
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	4, 283, 289, 423
LmnI	GCTCC	2 cut(s)	142, 375
LpnPI	CCDG	6 cut(s)	71, 179, 325, 387, 433, 529
LweI	GCATC	2 cut(s)	37, 117
MaeI	CTAG	2 cut(s)	8, 333
MaeII	ACGT	1 cut(s)	215
MalI	GATC	4 cut(s)	6, 285, 291, 425
MboI	GATC	4 cut(s)	4, 283, 289, 423
MboII	GAAGA	3 cut(s)	26, 270, 376
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	2 cut(s)	4, 423
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	309, 430
MnlI	CCTC	3 cut(s)	55, 379, 382
MseI	TTAA	3 cut(s)	227, 278, 429
MspI	CCGG	2 cut(s)	58, 516
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	4 cut(s)	4, 283, 289, 423
NlaIII	CATG	2 cut(s)	240, 301
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	2 cut(s)	4, 423
SaqAI	TTAA	3 cut(s)	227, 278, 429
Sau3AI	GATC	4 cut(s)	4, 283, 289, 423
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	4 cut(s)	218, 344, 372, 539
SfaNI	GCATC	2 cut(s)	37, 117
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	309, 430
SspMI	CTAG	2 cut(s)	8, 333
StyD4I	CCNGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	309, 430
Tru1I	TTAA	3 cut(s)	227, 278, 429
Tru9I	TTAA	3 cut(s)	227, 278, 429
TscAI	CASTG	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	27, 216, 314
TspRI	CASTG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	186
XbaI	TCTAGA	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	8, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.