MD09G1177000.v1.1

BEST Arabidopsis thaliana protein match is COP1-interacting protein-related (TAIR AT1G72410.1)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
15163548 .. 15175642
12095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1177000.v1.1.491

Sequence Viewer

Length: 4290 bp
ATGAAATCTGATACTCATATTGATTATGCAGTATTCCAATTGTCACCAAAGCACTCACGATGTGAATTGTTTGTTTATAGTGATGGGAACACTGAGAAACTTGCTTCTGGTTCAGTTAAGCCATTTGTTACTCATTTAAAAGTTGTAGAAGAGCAGGTTGCACTTGCAATTCAGTCGATCAAACTTGAGGTTGACAAACGTAAATATACTGAGACATGGTTCACAAAAGGAACGCTTGAAAGGTTTGTGCGGTTTGTTAGCACACCTGAGGTGCTGGAACTGGTCAATATATTTGATGCTGAGATGTCCCAGTTGGAGGCGGCATGGAGAATATATTCTCAGGGGATGGGAGGTCATCATGCTGGCGCATTAGGTGGGGATGGAACAGGTACCACAGCAGCAGCAGATGCAACAAAGAAGGAGCTTTTGAGGGCTATTGATGTACGACTTGTTGCAGTTAGGCAGGATTTAACCACAGCTTGTGCTCGTGCATCTGCGGCTGGTTTCAACCCTGATACAGTCTCTGAACTACAACACTTTGCCGATCAGTTTGGTGCCCATCGCTTAAACGAAGCTTGCAGCAAATTCATCTCGCTATGCCAAAGAAGATCCGACGTGATCTCCCAATGGAAGCCAAGTGCGGACGACAGAGCTGTTAGATCCTCATGTGAGTCTGACATGTCCATTGATGGCCTCACTGAAAACTCGTCTGGGCCCCACAACCAACCCCAAAATAGGCAGGAGCAACTAGAAGACCCTTTAAAGCCCTCCACGTGTCAACAACCCGAGTTCCTCAACGCCAACTTCCCTACACAACAACGGAACAGCGTAACTGAGAAAGACAAAGAGGAAGGCAAGGCCAAGGTGGAGAAGAAGGTTGAATCCCAGACCGAGTCGACGACTCCTTTGGGTGTGAGTCAACCCGGGAGGCGGCTCAGCGTCCAGGACCGTATCAGCCTCTTTGAGAATAAACAGAAGGAGAGTTCTGGAGGTGGCAGTGGTGGAAAGTCGGTTGTTGCCAAACCTGGGGAGCTCAGAAGGCTCTCCTCTGACGTGTTGTCTGCCAAACCTGGGGAGCTCAAAAGGCTCTCCTCTGATGTGTCGTCTGCACCTGCTGTTGCAGAGAAGGCCGTGCTACGAAGATGGAGTGGTGCCAGTGACATGAGCATTGATTTGAGCGGGGAGAAGAAAGAAACGGAGAGCCCCTTGTGCACACCATCGTCTTCCTCTGCTTCTCATTTATTTTCTCAGACAAAGGTGGCGGCGAATACAATATCTGCTGTGACTGTGGATAAGGACCAGAAGGGGTCAACTGACTCGACAGATATTTGTAAGGTTGAGGGAAGGAGTGCTTCTGGTAGAGTTGGTGATGTTGAGCTGAAAGATGAAGCTGAGGGGCAGACTCGAGTTGGGGTTTTTGTAGGAAAGGAGGAGGTGGGTTCAAAGGCAAAGAAGGAGCAGGTGGGTTCTCATACTCAATCCAGGACTTCTAGTGGAAGAACAGAGCAGGTTGGGTTAAGTGATCAAGGGATTTATTCGGATAGCGAAGAAAGCAGTGGTTTTAAGGATCAATCAGGTTCTGAGACACAGTCCAAGGGTTTTTCAGGTCGGACAGAGGTTGTTGGAGGGAAGAACCTGGTTGGGGGTGCAATATCTGGTGGTGGGTTTGGAAGTAGGGTAGAGGATTCTAGACCGAGAGATCAGCCAATGACTCAGTTACTTCCTAGGGGTTACCAGGGTCATTCCCGATCTTTCTCAGGGCAGTTTGAGGGTGTTGTTGGACGAAAACTTGAAGAAGCTTCTTCAGCACAGCTCAAAGGGTTTGAGGGTGATCAACTCCCTCCCCAGCCTCTTTTTAGATCTTTTTCTGGAGAAATTGGGGAGGTGGGTAAAGTTGACTGCACATCATCTGATAAGAAACACATTAGAACGGAAGATTCTGGAGCTCAGAAAATGAGATTCCAGAAACCGGGTTCTGCCAGTCGCGAACAAATTAAGAAGCCACAGGGAAGGAGAGATGAAAGCAATAGTGGTCAAGAAAGCAAGTTGGATTTTACAGGTGACAAAGTTTTAAGGAATGAAGAGAGCTTTTCTACAATACCGACAACACCAGTCGAGCAAGTTCAGAGAGTTAGACAGACCAAGGGAAATCAAGAGCTCAATGATGAGCTCAAAATGAAGGCGAATGAGCTTGAAAAGCTTTTTGCAGAGCACAAGCTTCGGATTCCTGGGGATCTGTCTAGTTCTGCTCGAAGAAGCAAGCCCGTGGATGCAAAGAAGAAGGAACAGGCAGTAAGTTCACAAAACAGAAAACCAGCAGCGGAGGAGATTGCTCCTGCACAATTTCCTGCGGCTAACACAGTGTTGGAACCAATGGGTAGCTCTAGTGAGATGGAAAATTTCAATACTACTCCACCAATGAAGATAGCCGGTATCCAAGATTACGGTGATAATCTGAGGCAAAAATTTTCAGAGCCTGGTTTCTCTCTTGATTCTAAAGGAAAATTCTATGAGAGGTACATGCAAAAAAGAGATGCTAAACTGAGAGAAGAATGGGTTTCTAAAAGAGAAGAGAAGGAAGCCAAGTTGAAGGCCATGGAAGATAGCCTTGAGAAAAGTAAGGCAGAATTAAAAGCCAAGTTTTCAGGGTCAGCAGACAGACAGGATTCAGCATCTAGTGCTCGTAGGCGTGCAGACAAGCTGAGATCATTCAATTTTGGATCTAGTATGAAGAGGGAGCAGCCAATAGATTCCATTCATTGGGAGAAGGATGAGGATCTCTCTGAATTTCCAGGCCAAAAATTGTACGGAGAAGATAGGTTCTCTAACGAGGCATCTTTAGGAGACGGTGCTTCTAGAAGCATTCAAAATAAAAAGCTTTTTCCCAATAGAAATTTGCCTTCGTCCATCCCCTGGACACCAACTGCACCAGCTCCACGGTCATCAGGCAAAGTTTCCAACCTTAGTTCAGGTCGGCGAAGACCAGAGTTAGAAAATCCTCTAGCACAGTCAGTTCCCAACTTTCCTGATCTCAGGAAAGAAAACACAAAGCCCTCTTCTGGAGTTAGCAAACCAGCTGTTAGCAAAATACCTGCTCGTTCACAGGTCAAAAGCTTTTCCCGCAGCAAGAGCACGAGTGAAGAGATAATGGCCAAGGAAGAGAAGCCACAACGTTCTCAGTCCTTGAGGAAAAGCTCTGCAAATCCTGTAGAACTGAACAACTTATCTTCTCTACACTCTGATGGGGTTGTCTTGGTACCATTTGATGAAGAGCAAACCAAGCACGACTCCTATGATAAATTTGCTAAATATATGGAGTCGAAGTCATTTTTTAGGAAGAGTAATGGCATAGGCACTGGTTCTGGAGTTAGTTTTTCCAAGCTGAAAGGATCCATTTCTTCTGATTCTTTAACAAATGAAGAAGTTGAGGGAGAAGATTCAATTGACACAGCCAAGGAAGAAGAAGAAGAGGAAGAGCTTGAAAATGGTGTTGATATGGATATGGTAGTTGAAGATGGTGATGATATGGATGTGGATAATGGGAAACGAAGACCGAGCCAGGATTCTGAAAGGTCTGATAACGTCGATTCCGTAAGATCTCTTTCTCAAGTGGACCTTGCTTCAATGGCTGAATTGCCTGCGGCTGCACCCTCAACATTTCATACTTTGGGGTCTCTACCAGACTCACCTGGGGAAAGCCCCATTTCATGGAACTTGCACGTGCATCATTCCTTTTCCTACCCTCACGAGGCCTCAGATGTTGATGCCTCAGTAGACTTCCCAATTGGGAGCCCTGCTTCTTGGAATTCTCATGGTCTTACCCAAATAGATGTTGATGCAGCTCGGATGAGAAAGAAATGGGGAAGTGCTCAGAAACCTATCCTTGCTACCAATTCATCTCAAAATCAGTCACGTAAGGATGTGACAAAAGGATTTAAACGGTTATTAAAGTTTGGAAGAAAAAGTCGGGGGACAGATAATATGAGTGACTGGATCTCTGCTACGACTTCTGAAGGGGATGATGATACAGAAGATGGGCGAGATCCTGCAAACCGATTATCAGAAGATTTTAGGAAGTCAAGAATGGGATTCACGCAGGGTCCTGATGACAGCTTCAATGAAAGCGAGTTCAATGAACAGGTACAAGCGTTACGGACCTCTATCCCGGCACCTCCAGTGAACTTTAAGCTGAGGGACAATCATTTATCGGGAAGCTCGTTGAAAGCTCCGCGGTCATTCTTCTCACTCTCATCATTCCGAAGCAAGGGAAGCGACTCAAAGCTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1430

Amino Acids

156.73

Weight (kDa)

6.33

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1120, 1450
Acc36I ACCTGC 5 cut(s) 145, 1120, 1450, 1498, 3100
Acc65I GGTACC 2 cut(s) 389, 3256
AccB1I GGYRCC 5 cut(s) 389, 554, 1151, 3256, 4168
AccB7I CCANNNNNTGG 3 cut(s) 2760, 2913, 3708
AccBSI CCGCTC 1 cut(s) 1179
AccI GTMKAC 2 cut(s) 896, 3774
AccII CGCG 2 cut(s) 1986, 4231
AclI AACGTT 1 cut(s) 3172
AcoI YGGCCR 1 cut(s) 3150
AcsI RAATTY 8 cut(s) 584, 2398, 2465, 2504, 2786, 2893, 3299, 3805
AcuI CTGAAG 2 cut(s) 1788, 4032
AcvI CACGTG 2 cut(s) 774, 3721
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 6 cut(s) 391, 444, 2519, 2807, 3258, 4143
AflIII ACRYGT 3 cut(s) 678, 773, 1053
AhdI GACNNNNNGTC 1 cut(s) 1057
AjiI CACGTC 2 cut(s) 616, 1054
Alw26I GTCTC 5 cut(s) 206, 526, 1577, 2838, 3678
Alw44I GTGCAC 1 cut(s) 1210
AlwNI CAGNNNCTG 3 cut(s) 524, 1580, 2477
Ama87I CYCGRG 3 cut(s) 785, 923, 1404
AoxI GGCC 8 cut(s) 691, 713, 858, 1128, 2592, 2794, 3150, 3750
ApaI GGGCCC 1 cut(s) 717
ApaLI GTGCAC 1 cut(s) 1210
ApeKI GCWGC 8 cut(s) 398, 401, 579, 2318, 2740, 3123, 3644, 3839
ApoI RAATTY 8 cut(s) 584, 2398, 2465, 2504, 2786, 2893, 3299, 3805
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
Asp700I GAANNNNTTC 1 cut(s) 334
Asp718I GGTACC 2 cut(s) 389, 3256
AspA2I CCTAGG 1 cut(s) 1724
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 7 cut(s) 713, 714, 946, 1297, 3613, 4100, 4155
AsuC2I CCSGG 4 cut(s) 924, 925, 1971, 4166
AsuHPI GGTGA 7 cut(s) 36, 1379, 1841, 2072, 2459, 3530, 3678
AvaI CYCGRG 3 cut(s) 785, 923, 1404
AvaII GGWCC 5 cut(s) 946, 1297, 3613, 4100, 4155
AvrII CCTAGG 1 cut(s) 1724
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 3 cut(s) 559, 717, 1214
BaeI ACNNNNGTAYC 2 cut(s) 4133, 4166
BalI TGGCCA 1 cut(s) 3152
BamHI GGATCC 1 cut(s) 3389
BanI GGYRCC 5 cut(s) 389, 554, 1151, 3256, 4168
BanII GRGCYC 8 cut(s) 717, 1035, 1080, 1205, 1948, 2160, 2172, 3794
BauI CACGAG 3 cut(s) 486, 3133, 3746
BbrPI CACGTG 2 cut(s) 774, 3721
BbsI GAAGAC 4 cut(s) 759, 1215, 2986, 3556
BbvCI CCTCAGC 3 cut(s) 1392, 4190, 4283
BbvI GCAGC 8 cut(s) 410, 413, 591, 2330, 2752, 3135, 3631, 3851
BceAI ACGGC 1 cut(s) 1115
BcgI CGANNNNNNTGC 4 cut(s) 156, 190, 2201, 2235
BciVI GTATCC 1 cut(s) 2444
BclI TGATCA 2 cut(s) 1522, 1831
BcnI CCSGG 4 cut(s) 924, 925, 1971, 4166
BcoDI GTCTC 5 cut(s) 206, 526, 1577, 2838, 3678
BfmI CTRYAG 1 cut(s) 3207
BfuAI ACCTGC 5 cut(s) 145, 1120, 1450, 1498, 3100
BfuI GTATCC 1 cut(s) 2444
BglII AGATCT 2 cut(s) 1859, 3596
BlnI CCTAGG 1 cut(s) 1724
BlpI GCTNAGC 1 cut(s) 935
Bme18I GGWCC 5 cut(s) 946, 1297, 3613, 4100, 4155
BmeRI GACNNNNNGTC 1 cut(s) 1057
BmeT110I CYCGRG 3 cut(s) 785, 923, 1404
BmgBI CACGTC 2 cut(s) 616, 1054
BmgT120I GGNCC 7 cut(s) 713, 714, 946, 1297, 3613, 4100, 4155
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 4 cut(s) 759, 1215, 2986, 3556
BplI GAGNNNNNCTC 2 cut(s) 2765, 2797
BpmI CTGGAG 6 cut(s) 1008, 1890, 1962, 3081, 3384, 4158
Bpu10I CCTNAGC 3 cut(s) 1392, 4190, 4283
Bpu1102I GCTNAGC 1 cut(s) 935
BpuEI CTTGAG 4 cut(s) 206, 2630, 3205, 3591
BpuMI CCSGG 4 cut(s) 924, 925, 1971, 4166
BsaAI YACGTR 3 cut(s) 774, 3721, 3914
BsaBI GATNNNNATC 1 cut(s) 2775
BsaI GGTCTC 1 cut(s) 3678
BsaXI ACNNNNNCTCC 4 cut(s) 605, 635, 3308, 3338
Bse118I RCCGGY 1 cut(s) 2429
Bse1I ACTGG 8 cut(s) 285, 310, 1155, 1980, 2111, 3361, 3995, 4175
Bse21I CCTNAGG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 2775
BseGI GGATG 9 cut(s) 351, 385, 2275, 2776, 2907, 3535, 3852, 3925, 4024
BseJI GATNNNNATC 1 cut(s) 2775
BseNI ACTGG 8 cut(s) 285, 310, 1155, 1980, 2111, 3361, 3995, 4175
BseRI GAGGAG 4 cut(s) 1036, 1081, 1445, 2339
BseSI GKGCMC 3 cut(s) 559, 717, 1214
BseXI GCAGC 8 cut(s) 410, 413, 591, 2330, 2752, 3135, 3631, 3851
BseYI CCCAGC 1 cut(s) 1845
BsgI GTGCAG 6 cut(s) 1092, 1885, 2322, 2712, 2910, 3630
Bsh1236I CGCG 2 cut(s) 1986, 4231
BshFI GGCC 8 cut(s) 693, 715, 860, 1130, 2594, 2796, 3152, 3752
BshNI GGYRCC 5 cut(s) 389, 554, 1151, 3256, 4168
BsiHKCI CYCGRG 3 cut(s) 785, 923, 1404
BsiSI CCGG 4 cut(s) 924, 1970, 2430, 4166
BslFI GGGAC 3 cut(s) 292, 3985, 4208
BsmAI GTCTC 5 cut(s) 206, 526, 1577, 2838, 3678
BsmBI CGTCTC 1 cut(s) 2838
BsmFI GGGAC 3 cut(s) 292, 3985, 4208
BsmI GAATGC 1 cut(s) 2862
BsnI GGCC 8 cut(s) 693, 715, 860, 1130, 2594, 2796, 3152, 3752
Bso31I GGTCTC 1 cut(s) 3678
BsoBI CYCGRG 3 cut(s) 785, 923, 1404
Bsp120I GGGCCC 1 cut(s) 713
Bsp1720I GCTNAGC 1 cut(s) 935
Bsp19I CCATGG 1 cut(s) 2595
Bsp68I TCGCGA 1 cut(s) 1986
BspANI GGCC 8 cut(s) 693, 715, 860, 1130, 2594, 2796, 3152, 3752
BspFNI CGCG 2 cut(s) 1986, 4231
BspMI ACCTGC 5 cut(s) 145, 1120, 1450, 1498, 3100
BspQI GCTCTTC 3 cut(s) 144, 3264, 3468
BspT107I GGYRCC 5 cut(s) 389, 554, 1151, 3256, 4168
BspTNI GGTCTC 1 cut(s) 3678
BsrBI CCGCTC 1 cut(s) 1179
BsrFI RCCGGY 1 cut(s) 2429
BsrI ACTGG 8 cut(s) 285, 310, 1155, 1980, 2111, 3361, 3995, 4175
BssAI RCCGGY 1 cut(s) 2429
BssSI CACGAG 3 cut(s) 486, 3133, 3746
BssT1I CCWWGG 7 cut(s) 861, 1593, 1724, 2142, 2595, 3153, 3453
Bst2BI CACGAG 3 cut(s) 486, 3133, 3746
BstAPI GCANNNNNTGC 2 cut(s) 407, 2678
BstBAI YACGTR 3 cut(s) 774, 3721, 3914
BstC8I GCNNGC 5 cut(s) 364, 577, 2261, 2691, 3639
BstDSI CCRYGG 4 cut(s) 2265, 2595, 2936, 4229
BstEII GGTNACC 1 cut(s) 1730
BstF5I GGATG 9 cut(s) 351, 385, 2275, 2776, 2907, 3535, 3852, 3925, 4024
BstFNI CGCG 2 cut(s) 1986, 4231
BstHHI GCGC 1 cut(s) 368
BstMAI GTCTC 5 cut(s) 206, 526, 1577, 2838, 3678
BstNSI RCATGY 2 cut(s) 682, 2524
BstPI GGTNACC 1 cut(s) 1730
BstSFI CTRYAG 1 cut(s) 3207
BstSLI GKGCMC 3 cut(s) 559, 717, 1214
BstUI CGCG 2 cut(s) 1986, 4231
BstV1I GCAGC 8 cut(s) 410, 413, 591, 2330, 2752, 3135, 3631, 3851
BstV2I GAAGAC 4 cut(s) 759, 1215, 2986, 3556
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 2444
BsuRI GGCC 8 cut(s) 693, 715, 860, 1130, 2594, 2796, 3152, 3752
BtgI CCRYGG 4 cut(s) 2265, 2595, 2936, 4229
BtgZI GCGATG 1 cut(s) 545
BtrI CACGTC 2 cut(s) 616, 1054
BtsCI GGATG 9 cut(s) 351, 385, 2275, 2776, 2907, 3535, 3852, 3925, 4024
BtsI GCAGTG 2 cut(s) 1003, 1561
BtsIMutI CAGTG 8 cut(s) 90, 696, 1003, 1162, 1561, 2367, 3354, 4182
BtuMI TCGCGA 1 cut(s) 1986
BveI ACCTGC 5 cut(s) 145, 1120, 1450, 1498, 3100
Cac8I GCNNGC 5 cut(s) 364, 577, 2261, 2691, 3639
CaiI CAGNNNCTG 3 cut(s) 524, 1580, 2477
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 2429
Cfr13I GGNCC 7 cut(s) 713, 714, 946, 1297, 3613, 4100, 4155
Cfr42I CCGCGG 1 cut(s) 4232
Cfr9I CCCGGG 1 cut(s) 923
CseI GACGC 1 cut(s) 928
CsiI ACCWGGT 1 cut(s) 1635
Csp6I GTAC 6 cut(s) 390, 443, 2518, 2806, 3257, 4142
CviQI GTAC 6 cut(s) 390, 443, 2518, 2806, 3257, 4142
DraI TTTAAA 3 cut(s) 138, 762, 3937
DraIII CACNNNGTG 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 3150
Eam1105I GACNNNNNGTC 1 cut(s) 1057
Ecl136II GAGCTC 5 cut(s) 1033, 1078, 1946, 2158, 2170
Eco130I CCWWGG 7 cut(s) 861, 1593, 1724, 2142, 2595, 3153, 3453
Eco147I AGGCCT 1 cut(s) 3752
Eco24I GRGCYC 8 cut(s) 717, 1035, 1080, 1205, 1948, 2160, 2172, 3794
Eco31I GGTCTC 1 cut(s) 3678
Eco47I GGWCC 5 cut(s) 946, 1297, 3613, 4100, 4155
Eco53kI GAGCTC 5 cut(s) 1033, 1078, 1946, 2158, 2170
Eco57I CTGAAG 2 cut(s) 1788, 4032
Eco72I CACGTG 2 cut(s) 774, 3721
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 3 cut(s) 785, 923, 1404
Eco91I GGTNACC 1 cut(s) 1730
EcoICRI GAGCTC 5 cut(s) 1033, 1078, 1946, 2158, 2170
EcoO109I RGGNCCY 2 cut(s) 714, 4100
EcoO65I GGTNACC 1 cut(s) 1730
EcoRI GAATTC 1 cut(s) 3805
EcoT14I CCWWGG 7 cut(s) 861, 1593, 1724, 2142, 2595, 3153, 3453
EcoT38I GRGCYC 8 cut(s) 717, 1035, 1080, 1205, 1948, 2160, 2172, 3794
ErhI CCWWGG 7 cut(s) 861, 1593, 1724, 2142, 2595, 3153, 3453
Esp3I CGTCTC 1 cut(s) 2838
FalI AAGNNNNNCTT 8 cut(s) 219, 251, 1336, 1368, 2592, 2624, 3600, 3632
FaqI GGGAC 3 cut(s) 292, 3985, 4208
FauI CCCGC 2 cut(s) 1172, 3128
FbaI TGATCA 2 cut(s) 1522, 1831
FblI GTMKAC 2 cut(s) 896, 3774
FokI GGATG 9 cut(s) 358, 392, 2282, 2783, 2894, 3542, 3859, 3932, 4031
FriOI GRGCYC 8 cut(s) 717, 1035, 1080, 1205, 1948, 2160, 2172, 3794
GlaI GCGC 1 cut(s) 367
GsaI CCCAGC 1 cut(s) 1849
GsuI CTGGAG 6 cut(s) 1008, 1890, 1962, 3081, 3384, 4158
HaeIII GGCC 8 cut(s) 693, 715, 860, 1130, 2594, 2796, 3152, 3752
HapII CCGG 4 cut(s) 924, 1970, 2430, 4166
HgaI GACGC 1 cut(s) 928
HhaI GCGC 1 cut(s) 368
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 6 cut(s) 193, 779, 897, 920, 1311, 1897
HindII GTYRAC 6 cut(s) 193, 779, 897, 920, 1311, 1897
HindIII AAGCTT 6 cut(s) 573, 1797, 2198, 2216, 2876, 3112
HpaII CCGG 4 cut(s) 924, 1970, 2430, 4166
HphI GGTGA 7 cut(s) 36, 1379, 1841, 2072, 2459, 3530, 3678
Hpy99I CGWCG 3 cut(s) 617, 901, 3587
HpyCH4IV ACGT 8 cut(s) 199, 615, 773, 1053, 3172, 3582, 3720, 3913
HpySE526I ACGT 8 cut(s) 199, 615, 773, 1053, 3172, 3582, 3720, 3913
HspAI GCGC 1 cut(s) 366
KpnI GGTACC 2 cut(s) 393, 3260
Ksp22I TGATCA 2 cut(s) 1522, 1831
KspI CCGCGG 1 cut(s) 4232
LguI GCTCTTC 3 cut(s) 144, 3264, 3468
Lsp1109I GCAGC 8 cut(s) 410, 413, 591, 2330, 2752, 3135, 3631, 3851
MabI ACCWGGT 1 cut(s) 1635
MaeII ACGT 8 cut(s) 199, 615, 773, 1053, 3172, 3582, 3720, 3913
MbiI CCGCTC 1 cut(s) 1179
MfeI CAATTG 3 cut(s) 38, 3441, 3783
MlsI TGGCCA 1 cut(s) 3152
MluNI TGGCCA 1 cut(s) 3152
MmeI TCCRAC 8 cut(s) 294, 636, 1589, 1603, 1759, 2028, 2346, 2982
Mox20I TGGCCA 1 cut(s) 3152
MroXI GAANNNNTTC 1 cut(s) 334
MscI TGGCCA 1 cut(s) 3152
MslI CAYNNNNRTG 1 cut(s) 3240
Msp20I TGGCCA 1 cut(s) 3152
MspA1I CMGCKG 3 cut(s) 2321, 3077, 4231
MspI CCGG 4 cut(s) 924, 1970, 2430, 4166
MunI CAATTG 3 cut(s) 38, 3441, 3783
Mva1269I GAATGC 1 cut(s) 2862
MvnI CGCG 2 cut(s) 1986, 4231
NciI CCSGG 4 cut(s) 924, 925, 1971, 4166
NcoI CCATGG 1 cut(s) 2595
NmuCI GTSAC 7 cut(s) 42, 1157, 1282, 2060, 3909, 3922, 3986
NruI TCGCGA 1 cut(s) 1986
NspI RCATGY 2 cut(s) 682, 2524
PaeR7I CTCGAG 1 cut(s) 1404
PaqCI CACCTGC 2 cut(s) 1120, 1450
PceI AGGCCT 1 cut(s) 3752
PciI ACATGT 1 cut(s) 678
PciSI GCTCTTC 3 cut(s) 144, 3264, 3468
PcsI WCGNNNNNNNCGW 2 cut(s) 3588, 4214
PctI GAATGC 1 cut(s) 2862
PdmI GAANNNNTTC 1 cut(s) 334
PflFI GACNNNGTC 2 cut(s) 892, 1588
PflMI CCANNNNNTGG 3 cut(s) 2760, 2913, 3708
PfoI TCCNGGA 2 cut(s) 942, 1481
PmaCI CACGTG 2 cut(s) 774, 3721
PmlI CACGTG 2 cut(s) 774, 3721
Ppu21I YACGTR 3 cut(s) 774, 3721, 3914
PpuMI RGGWCCY 1 cut(s) 4100
PscI ACATGT 1 cut(s) 678
Psp124BI GAGCTC 5 cut(s) 1035, 1080, 1948, 2160, 2172
Psp1406I AACGTT 1 cut(s) 3172
Psp5II RGGWCCY 1 cut(s) 4100
PspCI CACGTG 2 cut(s) 774, 3721
PspEI GGTNACC 1 cut(s) 1730
PspFI CCCAGC 1 cut(s) 1845
PspOMI GGGCCC 1 cut(s) 713
PspPI GGNCC 7 cut(s) 713, 714, 946, 1297, 3613, 4100, 4155
PspPPI RGGWCCY 1 cut(s) 4100
PspXI VCTCGAGB 1 cut(s) 1404
PstNI CAGNNNCTG 3 cut(s) 524, 1580, 2477
PsyI GACNNNGTC 2 cut(s) 892, 1588
PvuII CAGCTG 1 cut(s) 3077
RruI TCGCGA 1 cut(s) 1986
RsaI GTAC 6 cut(s) 391, 444, 2519, 2807, 3258, 4143
RsaNI GTAC 6 cut(s) 390, 443, 2518, 2806, 3257, 4142
RseI CAYNNNNRTG 1 cut(s) 3240
SacI GAGCTC 5 cut(s) 1035, 1080, 1948, 2160, 2172
SacII CCGCGG 1 cut(s) 4232
SalI GTCGAC 1 cut(s) 895
SapI GCTCTTC 3 cut(s) 144, 3264, 3468
Sau96I GGNCC 7 cut(s) 713, 714, 946, 1297, 3613, 4100, 4155
SexAI ACCWGGT 1 cut(s) 1635
SfcI CTRYAG 1 cut(s) 3207
Sfr274I CTCGAG 1 cut(s) 1404
Sfr303I CCGCGG 1 cut(s) 4232
SgrBI CCGCGG 1 cut(s) 4232
SinI GGWCC 5 cut(s) 946, 1297, 3613, 4100, 4155
SlaI CTCGAG 1 cut(s) 1404
SmaI CCCGGG 1 cut(s) 925
SmiMI CAYNNNNRTG 1 cut(s) 3240
SmlI CTYRAG 5 cut(s) 185, 1404, 2609, 3184, 3606
SmoI CTYRAG 5 cut(s) 185, 1404, 2609, 3184, 3606
SseBI AGGCCT 1 cut(s) 3752
SstI GAGCTC 5 cut(s) 1035, 1080, 1948, 2160, 2172
StuI AGGCCT 1 cut(s) 3752
StyI CCWWGG 7 cut(s) 861, 1593, 1724, 2142, 2595, 3153, 3453
TaiI ACGT 8 cut(s) 202, 618, 776, 1056, 3175, 3585, 3723, 3916
TaqI TCGA 8 cut(s) 176, 896, 1319, 1405, 2115, 2251, 3320, 3585
TaqII GACCGA 3 cut(s) 905, 1708, 3568
TauI GCSGC 6 cut(s) 323, 500, 934, 1265, 2354, 3644
TscAI CASTG 8 cut(s) 97, 703, 1003, 1162, 1561, 2367, 3361, 4182
TseFI GTSAC 7 cut(s) 42, 1157, 1282, 2060, 3909, 3922, 3986
TseI GCWGC 8 cut(s) 398, 401, 579, 2318, 2740, 3123, 3644, 3839
Tsp45I GTSAC 7 cut(s) 42, 1157, 1282, 2060, 3909, 3922, 3986
TspGWI ACGGA 6 cut(s) 835, 1211, 1946, 2823, 3580, 4168
TspMI CCCGGG 1 cut(s) 923
TspRI CASTG 8 cut(s) 97, 703, 1003, 1162, 1561, 2367, 3361, 4182
Tth111I GACNNNGTC 2 cut(s) 892, 1588
Van91I CCANNNNNTGG 3 cut(s) 2760, 2913, 3708
VneI GTGCAC 1 cut(s) 1210
VpaK11BI GGWCC 5 cut(s) 946, 1297, 3613, 4100, 4155
XapI RAATTY 8 cut(s) 584, 2398, 2465, 2504, 2786, 2893, 3299, 3805
XbaI TCTAGA 2 cut(s) 1688, 2855
XceI RCATGY 2 cut(s) 682, 2524
XhoI CTCGAG 1 cut(s) 1404
XmaI CCCGGG 1 cut(s) 923
XmaJI CCTAGG 1 cut(s) 1724
XmiI GTMKAC 2 cut(s) 896, 3774
XmnI GAANNNNTTC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.