Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8402929.1

Orthogroup ID

OG0007407

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1287

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8402929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

agaaggctcagcgtccaggaccgcatcaagctctttgagaataagcaggacagtcctactggttccagcggtggcggcaaacccgttgttgccaaacctgcggagctccggcggctgtcgtctgatgtgtcatcggcgcctgcggccgtgcttcggagatggagcggtgctagtgacatgagcatcgatttgagtgctgacaagaaagacactgagagccccttgtgcacgccatcttctatttcctctgtttctctatcaaggggaaatagtattgtatctggtgtggcagagggtaaggaccggaaggcgctgaatgactcggtggattcgagtctttctggtagagttggccatcttggggtgaaagatcaagccgaggggcagatcggggctggggtattaggtgaagaggaggaggtggggtcaaaggtgaggaacaatttgaagacgcaggtgagttcccagacccaatccaagtcttctattggcaaaacagagcaggttgcgttaagtgatcaaggggtttctctagagaagttgaatatatcttctgctagcaaagagagaagtggtgggtctaaggatcaacccggttccgagacacggtctataggattttcaaatcgggcagcggttgctggtgggaagaaccaggttgggagtgctccatctgatggtggaactgtgaatggggttgaggattctagatcgagagatcagtcaatgactcagttacatcctaggggattccagggtcatacccgatctttctcggggcagtctgaaggtggttttggacgaaaacctgatgaagcctcttcagggcagctcaaaggcatccagcctgatcaattacctccccagcctctgtggagatcgttttctggagagcttgaggaggaggtgggaagaaaggacttgacatcatcagataagcaacaactaaaagtggatagttctggaactcagaaaatgaaattccagaaacctgcttctgccagtcgtgaacagaataagaggtcactgggtaggagagatgaaagcggaaacatcaagttggattttatgggtgataaaggttcagtgaatcaagagagccttgctacaatgtcaacagcagtagagcaagttcagagagtaagacagaccaagggaaatcaggaactcaatgatgaacttaaactcaaggcaaatgagcttgaaaagctttatgcagagcacaaacttagggttcctgtggatcagtctagtttcgctcgtagaagcaagcctgtggatatgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

45.91

Weight (kDa)

9.4

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14172 AT3G14172 AT3G14172
fragaria_vesca	FvH4_6g35280 FvH4_6g35280 FvH4_6g35280
malus_domestica	MD09G1177000.v1.1 MD17G1149300.v1.1
prunus_persica	Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1
pyrus_communis	pycom09g09520 pycom17g14310
rosa_chinensis	RchiOBHm_Chr2g0146661
rosa_laevigata	RLG00000020212
rosa_multiflora	Rmu_co8402929.1_g000001 Rmu_sc0001986.1_g000037 Rmu_sc0015720.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099980
rosa_rugosa	Rorug02G0395900
rosa_samantha	Rh2AG452200 Rh2BG465100 Rh2CG439200 Rh2DG474100
rosa_wichuraiana	Rw2G036940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	4 cut(s)	106, 445, 493, 1000
AccB1I	GGYRCC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	165
AciI	CCGC	9 cut(s)	22, 69, 75, 101, 112, 143, 165, 635, 1047
AclWI	GGATC	2 cut(s)	594, 1251
AcoI	YGGCCR	2 cut(s)	144, 352
AcsI	RAATTY	1 cut(s)	980
AcuI	CTGAAG	2 cut(s)	807, 807
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	5 cut(s)	153, 361, 606, 677, 825
AgsI	TTSAA	4 cut(s)	448, 544, 624, 1205
AjnI	CCWGG	3 cut(s)	15, 654, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AluBI	AGCT	6 cut(s)	31, 106, 832, 895, 1201, 1210
AluI	AGCT	6 cut(s)	31, 106, 832, 895, 1201, 1210
Alw21I	GWGCWC	4 cut(s)	108, 230, 670, 1224
Alw26I	GTCTC	1 cut(s)	596
Alw44I	GTGCAC	1 cut(s)	226
AlwI	GGATC	2 cut(s)	594, 1251
AlwNI	CAGNNNCTG	1 cut(s)	871
Ama87I	CYCGRG	1 cut(s)	775
AoxI	GGCC	2 cut(s)	144, 352
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	632, 829
ApoI	RAATTY	1 cut(s)	980
AspA2I	CCTAGG	1 cut(s)	743
AspLEI	GCGC	2 cut(s)	139, 313
AspS9I	GGNCC	2 cut(s)	19, 301
AsuC2I	CCSGG	1 cut(s)	594
AsuHPI	GGTGA	5 cut(s)	376, 419, 445, 469, 1085
AsuNHI	GCTAGC	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	2 cut(s)	19, 301
AvrII	CCTAGG	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	108, 221
BbsI	GAAGAC	2 cut(s)	455, 474
Bbv12I	GWGCWC	4 cut(s)	108, 230, 670, 1224
BbvI	GCAGC	2 cut(s)	644, 841
BccI	CCATC	5 cut(s)	153, 241, 363, 671, 679
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	3 cut(s)	17, 656, 755
BclI	TGATCA	2 cut(s)	517, 850
BcnI	CCSGG	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	6 cut(s)	171, 533, 558, 708, 744, 1251
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	2 cut(s)	140, 314
BfuAI	ACCTGC	4 cut(s)	106, 445, 493, 1000
BisI	GCNGC	5 cut(s)	76, 113, 144, 633, 830
BlnI	CCTAGG	1 cut(s)	743
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	5 cut(s)	77, 114, 145, 634, 831
Bme1390I	CCNGG	4 cut(s)	17, 594, 656, 755
Bme18I	GGWCC	2 cut(s)	19, 301
BmeT110I	CYCGRG	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	19, 301
BmiI	GGNNCC	4 cut(s)	64, 138, 598, 1236
BmrFI	CCNGG	4 cut(s)	17, 594, 656, 755
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	3 cut(s)	33, 192, 849
BmtI	GCTAGC	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	1037
BpiI	GAAGAC	2 cut(s)	455, 474
BpmI	CTGGAG	1 cut(s)	909
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	917, 1172
BpuMI	CCSGG	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	4 cut(s)	378, 743, 754, 1152
BsaWI	WCCGGW	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 361, 606, 677, 825
Bse1I	ACTGG	3 cut(s)	64, 1002, 1032
BseBI	CCWGG	3 cut(s)	17, 656, 755
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	378, 743, 754, 1152
BseGI	GGATG	2 cut(s)	739, 840
BseLI	CCNNNNNNNGG	5 cut(s)	153, 361, 606, 677, 825
BseMII	CTCAG	4 cut(s)	22, 204, 746, 983
BseNI	ACTGG	3 cut(s)	64, 1002, 1032
BseRI	GAGGAG	4 cut(s)	428, 431, 914, 917
BseSI	GKGCMC	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	644, 841
BseYI	CCCAGC	2 cut(s)	395, 864
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	146, 354
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	4 cut(s)	108, 230, 670, 1224
BsiHKCI	CYCGRG	1 cut(s)	775
BsiSI	CCGG	3 cut(s)	109, 304, 594
BslI	CCNNNNNNNGG	5 cut(s)	153, 361, 606, 677, 825
BsmAI	GTCTC	1 cut(s)	596
BsnI	GGCC	2 cut(s)	146, 354
BsoBI	CYCGRG	1 cut(s)	775
Bsp1286I	GDGCHC	5 cut(s)	108, 221, 230, 670, 1224
Bsp1720I	GCTNAGC	1 cut(s)	8
BspACI	CCGC	9 cut(s)	22, 69, 75, 101, 112, 143, 165, 635, 1047
BspANI	GGCC	2 cut(s)	146, 354
BspCNI	CTCAG	4 cut(s)	21, 205, 745, 982
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	64, 138, 598, 1236
BspMI	ACCTGC	4 cut(s)	106, 445, 493, 1000
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	594, 1251
BspT107I	GGYRCC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	64, 1002, 1032
BssECI	CCNNGG	4 cut(s)	378, 743, 754, 1152
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	2 cut(s)	743, 1152
Bst2UI	CCWGG	3 cut(s)	17, 656, 755
Bst4CI	ACNGT	3 cut(s)	53, 609, 688
Bst6I	CTCTTC	2 cut(s)	405, 826
BstACI	GRCGYC	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	4 cut(s)	141, 230, 559, 1271
BstDEI	CTNAG	6 cut(s)	8, 213, 582, 732, 969, 1229
BstF5I	GGATG	2 cut(s)	739, 840
BstH2I	RGCGCY	2 cut(s)	140, 314
BstHHI	GCGC	2 cut(s)	139, 313
BstMAI	GTCTC	1 cut(s)	596
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 98, 112, 143, 225, 638, 1207
BstNI	CCWGG	3 cut(s)	17, 656, 755
BstSCI	CCNGG	4 cut(s)	15, 592, 654, 753
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	644, 841
BstV2I	GAAGAC	2 cut(s)	455, 474
BstZI	CGGCCG	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	146, 354
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	739, 840
BtsIMutI	CAGTG	3 cut(s)	210, 1025, 1092
BveI	ACCTGC	4 cut(s)	106, 445, 493, 1000
Cac8I	GCNNGC	4 cut(s)	141, 230, 559, 1271
CaiI	CAGNNNCTG	1 cut(s)	871
CfoI	GCGC	2 cut(s)	139, 313
Cfr13I	GGNCC	2 cut(s)	19, 301
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	460
CsiI	ACCWGGT	1 cut(s)	654
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	6 cut(s)	8, 213, 582, 732, 969, 1229
DinI	GGCGCC	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	144, 352
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	405, 826
EarI	CTCTTC	2 cut(s)	405, 826
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	743, 1152
Eco24I	GRGCYC	2 cut(s)	108, 221
Eco47I	GGWCC	2 cut(s)	19, 301
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	807, 807
Eco88I	CYCGRG	1 cut(s)	775
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	15, 654, 753
EcoT14I	CCWWGG	2 cut(s)	743, 1152
EcoT38I	GRGCYC	2 cut(s)	108, 221
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	743, 1152
FaeI	CATG	1 cut(s)	181
FaiI	YATR	7 cut(s)	179, 548, 614, 762, 1070, 1215, 1283
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FatI	CATG	1 cut(s)	177
FbaI	TGATCA	2 cut(s)	517, 850
Fnu4HI	GCNGC	5 cut(s)	76, 113, 144, 633, 830
FokI	GGATG	2 cut(s)	726, 827
FriOI	GRGCYC	2 cut(s)	108, 221
Fsp4HI	GCNGC	5 cut(s)	76, 113, 144, 633, 830
FspBI	CTAG	6 cut(s)	171, 533, 558, 708, 744, 1251
GlaI	GCGC	2 cut(s)	138, 312
GluI	GCNGC	5 cut(s)	76, 113, 144, 633, 830
GsaI	CCCAGC	2 cut(s)	399, 868
GsuI	CTGGAG	1 cut(s)	909
HaeII	RGCGCY	2 cut(s)	140, 314
HaeIII	GGCC	2 cut(s)	146, 354
HapII	CCGG	3 cut(s)	109, 304, 594
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	139, 313
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	2 cut(s)	137, 311
HinP1I	GCGC	2 cut(s)	137, 311
HincII	GTYRAC	1 cut(s)	1116
HindII	GTYRAC	1 cut(s)	1116
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	7 cut(s)	320, 329, 334, 704, 730, 750, 1090
HpaII	CCGG	3 cut(s)	109, 304, 594
HphI	GGTGA	5 cut(s)	376, 419, 445, 469, 1085
Hpy166II	GTNNAC	3 cut(s)	228, 1010, 1116
Hpy188I	TCNGA	8 cut(s)	124, 156, 601, 676, 787, 934, 972, 1137
Hpy188III	TCNNGA	9 cut(s)	533, 708, 714, 888, 963, 985, 1007, 1094, 1163
Hpy8I	GTNNAC	3 cut(s)	228, 1010, 1116
HpyAV	CCTTC	2 cut(s)	301, 782
HpyCH4III	ACNGT	3 cut(s)	53, 609, 688
HpyCH4V	TGCA	2 cut(s)	228, 1217
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 98, 112, 143, 225, 638, 1207
HpyF3I	CTNAG	6 cut(s)	8, 213, 582, 732, 969, 1229
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	2 cut(s)	137, 311
KasI	GGCGCC	1 cut(s)	136
Ksp22I	TGATCA	2 cut(s)	517, 850
LmnI	GCTCC	4 cut(s)	103, 111, 162, 673
Lsp1109I	GCAGC	2 cut(s)	644, 841
LweI	GCATC	3 cut(s)	33, 192, 849
MabI	ACCWGGT	1 cut(s)	654
MaeI	CTAG	6 cut(s)	171, 533, 558, 708, 744, 1251
MaeIII	GTNAC	3 cut(s)	173, 735, 1023
MbiI	CCGCTC	1 cut(s)	165
MboII	GAAGA	8 cut(s)	228, 422, 460, 474, 543, 661, 813, 924
MhlI	GDGCHC	5 cut(s)	108, 221, 230, 670, 1224
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	3 cut(s)	442, 854, 980
MluNI	TGGCCA	1 cut(s)	354
Mly113I	GGCGCC	1 cut(s)	137
MlyI	GAGTC	3 cut(s)	314, 343, 724
MmeI	TCCRAC	1 cut(s)	1041
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	512, 1182
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	69, 635
MspI	CCGG	3 cut(s)	109, 304, 594
MspR9I	CCNGG	4 cut(s)	17, 594, 656, 755
MvaI	CCWGG	3 cut(s)	17, 656, 755
MwoI	GCNNNNNNNGC	7 cut(s)	75, 98, 112, 143, 225, 638, 1207
NarI	GGCGCC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	594
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	4 cut(s)	64, 138, 598, 1236
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	173, 1023
PaqCI	CACCTGC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	329, 704, 750, 1090
PflFI	GACNNNGTC	1 cut(s)	607
PflMI	CCANNNNNTGG	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	5 cut(s)	77, 114, 145, 634, 831
PleI	GAGTC	3 cut(s)	314, 342, 724
PluTI	GGCGCC	1 cut(s)	140
PpsI	GAGTC	3 cut(s)	314, 342, 724
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	3 cut(s)	15, 654, 753
PspFI	CCCAGC	2 cut(s)	395, 864
PspGI	CCWGG	3 cut(s)	15, 654, 753
PspN4I	GGNNCC	4 cut(s)	64, 138, 598, 1236
PspPI	GGNCC	2 cut(s)	19, 301
PsrI	GAACNNNNNNTAC	2 cut(s)	1116, 1148
PstNI	CAGNNNCTG	1 cut(s)	871
PsyI	GACNNNGTC	1 cut(s)	607
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	512, 1182
SatI	GCNGC	5 cut(s)	76, 113, 144, 633, 830
Sau96I	GGNCC	2 cut(s)	19, 301
SchI	GAGTC	3 cut(s)	314, 343, 724
ScrFI	CCNGG	4 cut(s)	17, 594, 656, 755
SduI	GDGCHC	5 cut(s)	108, 221, 230, 670, 1224
SexAI	ACCWGGT	1 cut(s)	654
SfaNI	GCATC	3 cut(s)	33, 192, 849
SfcI	CTRYAG	1 cut(s)	612
SfoI	GGCGCC	1 cut(s)	138
SinI	GGWCC	2 cut(s)	19, 301
SmlI	CTYRAG	2 cut(s)	896, 1187
SmoI	CTYRAG	2 cut(s)	896, 1187
Sse9I	AATT	3 cut(s)	442, 854, 980
SsiI	CCGC	9 cut(s)	22, 69, 75, 101, 112, 143, 165, 635, 1047
SspDI	GGCGCC	1 cut(s)	136
SspMI	CTAG	6 cut(s)	171, 533, 558, 708, 744, 1251
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	15, 592, 654, 753
StyI	CCWWGG	2 cut(s)	743, 1152
TaaI	ACNGT	3 cut(s)	53, 609, 688
TaqI	TCGA	3 cut(s)	186, 332, 713
TasI	AATT	3 cut(s)	442, 854, 980
TauI	GCSGC	3 cut(s)	78, 115, 146
TfiI	GAWTC	4 cut(s)	329, 704, 750, 1090
Tru1I	TTAA	2 cut(s)	512, 1182
Tru9I	TTAA	2 cut(s)	512, 1182
TscAI	CASTG	3 cut(s)	217, 1032, 1092
TseFI	GTSAC	2 cut(s)	173, 1023
TseI	GCWGC	2 cut(s)	632, 829
Tsp45I	GTSAC	2 cut(s)	173, 1023
TspDTI	ATGAA	4 cut(s)	828, 992, 1056, 1191
TspRI	CASTG	3 cut(s)	217, 1032, 1092
Tth111I	GACNNNGTC	1 cut(s)	607
Van91I	CCANNNNNTGG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	19, 301
XapI	RAATTY	1 cut(s)	980
XbaI	TCTAGA	2 cut(s)	532, 707
XmaJI	CCTAGG	1 cut(s)	743
XspI	CTAG	6 cut(s)	171, 533, 558, 708, 744, 1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.