BEST Arabidopsis thaliana protein match is COP1-interacting protein-related (TAIR AT1G72410.1)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14172 AT3G14172 AT3G14172 |
| fragaria_vesca | FvH4_6g35280 FvH4_6g35280 FvH4_6g35280 |
| malus_domestica | MD09G1177000.v1.1 MD17G1149300.v1.1 |
| prunus_persica | Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 |
| pyrus_communis | pycom09g09520 pycom17g14310 |
| rosa_chinensis | RchiOBHm_Chr2g0146661 |
| rosa_laevigata | RLG00000020212 |
| rosa_multiflora | Rmu_co8402929.1_g000001 Rmu_sc0001986.1_g000037 Rmu_sc0015720.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00099980 |
| rosa_rugosa | Rorug02G0395900 |
| rosa_samantha | Rh2AG452200 Rh2BG465100 Rh2CG439200 Rh2DG474100 |
| rosa_wichuraiana | Rw2G036940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1342 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 653, 2261 |
| Acc36I | ACCTGC | 6 cut(s) | 145, 901, 1003, 1342, 1390, 1897 |
| Acc65I | GGTACC | 1 cut(s) | 2323 |
| AccB1I | GGYRCC | 5 cut(s) | 554, 1033, 2323, 3004, 3364 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1574, 3426 |
| AccBSI | CCGCTC | 1 cut(s) | 1062 |
| AccI | GTMKAC | 2 cut(s) | 2584, 3492 |
| AccII | CGCG | 2 cut(s) | 2589, 2917 |
| AccIII | TCCGGA | 1 cut(s) | 3116 |
| AclI | AACGTT | 1 cut(s) | 875 |
| AclWI | GGATC | 5 cut(s) | 474, 1491, 2148, 3719, 3755 |
| AcoI | YGGCCR | 3 cut(s) | 1041, 1249, 3222 |
| AcsI | RAATTY | 8 cut(s) | 1877, 2362, 2402, 2537, 2960, 3053, 3179, 3523 |
| AcuI | CTGAAG | 2 cut(s) | 1704, 3750 |
| AcvI | CACGTG | 1 cut(s) | 747 |
| AcyI | GRCGYC | 1 cut(s) | 1034 |
| AfaI | GTAC | 8 cut(s) | 262, 273, 444, 580, 2325, 2417, 2751, 3109 |
| AflIII | ACRYGT | 2 cut(s) | 678, 746 |
| AjnI | CCWGG | 9 cut(s) | 634, 912, 1551, 1650, 2334, 2657, 3161, 3397, 3406 |
| Alw21I | GWGCWC | 7 cut(s) | 487, 1005, 1127, 1567, 2121, 2581, 3589 |
| Alw26I | GTCTC | 4 cut(s) | 526, 1493, 3152, 3461 |
| Alw44I | GTGCAC | 1 cut(s) | 1123 |
| AlwI | GGATC | 5 cut(s) | 474, 1491, 2148, 3719, 3755 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1768 |
| Ama87I | CYCGRG | 1 cut(s) | 1672 |
| Aor13HI | TCCGGA | 1 cut(s) | 3116 |
| AoxI | GGCC | 7 cut(s) | 1041, 1249, 2478, 2490, 3040, 3192, 3222 |
| ApaI | GGGCCC | 1 cut(s) | 3044 |
| ApaLI | GTGCAC | 1 cut(s) | 1123 |
| ApeKI | GCWGC | 8 cut(s) | 398, 497, 1726, 2638, 2837, 2868, 3359, 3557 |
| ApoI | RAATTY | 8 cut(s) | 1877, 2362, 2402, 2537, 2960, 3053, 3179, 3523 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 218, 334, 2860, 3143, 3858 |
| Asp718I | GGTACC | 1 cut(s) | 2323 |
| AspA2I | CCTAGG | 1 cut(s) | 1640 |
| AspLEI | GCGC | 4 cut(s) | 163, 1036, 1210, 2591 |
| AspS9I | GGNCC | 6 cut(s) | 916, 1198, 2661, 3040, 3041, 3818 |
| AsuC2I | CCSGG | 2 cut(s) | 1491, 3289 |
| AsuNHI | GCTAGC | 2 cut(s) | 100, 2825 |
| AvaI | CYCGRG | 1 cut(s) | 1672 |
| AvaII | GGWCC | 4 cut(s) | 916, 1198, 2661, 3818 |
| AvrII | CCTAGG | 1 cut(s) | 1640 |
| BaeGI | GKGCMC | 3 cut(s) | 559, 1127, 3044 |
| BalI | TGGCCA | 2 cut(s) | 1251, 3224 |
| BanI | GGYRCC | 5 cut(s) | 554, 1033, 2323, 3004, 3364 |
| BanII | GRGCYC | 4 cut(s) | 1005, 1118, 3044, 3512 |
| BauI | CACGAG | 1 cut(s) | 486 |
| BbrPI | CACGTG | 1 cut(s) | 747 |
| BbsI | GAAGAC | 5 cut(s) | 708, 732, 819, 1352, 1371 |
| Bbv12I | GWGCWC | 7 cut(s) | 487, 1005, 1127, 1567, 2121, 2581, 3589 |
| BbvI | GCAGC | 8 cut(s) | 410, 484, 1738, 2650, 2824, 2880, 3346, 3569 |
| BceAI | ACGGC | 3 cut(s) | 461, 838, 1028 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 648, 682, 1073, 1107, 3338, 3372 |
| BciT130I | CCWGG | 9 cut(s) | 636, 914, 1553, 1652, 2336, 2659, 3163, 3399, 3408 |
| BciVI | GTATCC | 1 cut(s) | 2581 |
| BclI | TGATCA | 3 cut(s) | 618, 1414, 1747 |
| BcnI | CCSGG | 2 cut(s) | 1491, 3289 |
| BcoDI | GTCTC | 4 cut(s) | 526, 1493, 3152, 3461 |
| BfmI | CTRYAG | 3 cut(s) | 1509, 2955, 3489 |
| BfoI | RGCGCY | 2 cut(s) | 1037, 1211 |
| BfuAI | ACCTGC | 6 cut(s) | 145, 901, 1003, 1342, 1390, 1897 |
| BfuI | GTATCC | 1 cut(s) | 2581 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3200 |
| BglII | AGATCT | 1 cut(s) | 3314 |
| BlnI | CCTAGG | 1 cut(s) | 1640 |
| BlpI | GCTNAGC | 2 cut(s) | 905, 2436 |
| Bme18I | GGWCC | 4 cut(s) | 916, 1198, 2661, 3818 |
| BmeT110I | CYCGRG | 1 cut(s) | 1672 |
| BmgT120I | GGNCC | 6 cut(s) | 916, 1198, 2661, 3040, 3041, 3818 |
| BmrI | ACTGGG | 1 cut(s) | 720 |
| BmtI | GCTAGC | 2 cut(s) | 104, 2829 |
| BmuI | ACTGGG | 1 cut(s) | 720 |
| BpiI | GAAGAC | 5 cut(s) | 708, 732, 819, 1352, 1371 |
| BpmI | CTGGAG | 2 cut(s) | 1806, 2826 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 905, 2436 |
| BpuEI | CTTGAG | 5 cut(s) | 206, 1814, 2069, 2953, 3309 |
| BpuMI | CCSGG | 2 cut(s) | 1491, 3289 |
| Bsa29I | ATCGAT | 2 cut(s) | 687, 1083 |
| BsaAI | YACGTR | 1 cut(s) | 747 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2731 |
| BsaHI | GRCGYC | 1 cut(s) | 1034 |
| BsaI | GGTCTC | 2 cut(s) | 3152, 3461 |
| BsaWI | WCCGGW | 4 cut(s) | 265, 1200, 3116, 3889 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1307, 1337, 2468, 2498 |
| Bse1I | ACTGG | 8 cut(s) | 37, 285, 715, 961, 1899, 2574, 3115, 3713 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2731 |
| BseAI | TCCGGA | 1 cut(s) | 3116 |
| BseBI | CCWGG | 9 cut(s) | 636, 914, 1553, 1652, 2336, 2659, 3163, 3399, 3408 |
| BseCI | ATCGAT | 2 cut(s) | 687, 1083 |
| BseGI | GGATG | 6 cut(s) | 385, 740, 1130, 1636, 1737, 3445 |
| BseJI | GATNNNNATC | 1 cut(s) | 2731 |
| BseNI | ACTGG | 8 cut(s) | 37, 285, 715, 961, 1899, 2574, 3115, 3713 |
| BseRI | GAGGAG | 7 cut(s) | 164, 1325, 1328, 1811, 1814, 2243, 3926 |
| BseSI | GKGCMC | 3 cut(s) | 559, 1127, 3044 |
| BseX3I | CGGCCG | 1 cut(s) | 1041 |
| BseXI | GCAGC | 8 cut(s) | 410, 484, 1738, 2650, 2824, 2880, 3346, 3569 |
| BseYI | CCCAGC | 2 cut(s) | 1292, 1761 |
| BsgI | GTGCAG | 3 cut(s) | 306, 2226, 2655 |
| Bsh1236I | CGCG | 2 cut(s) | 2589, 2917 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1044 |
| BshFI | GGCC | 7 cut(s) | 1043, 1251, 2480, 2492, 3042, 3194, 3224 |
| BshNI | GGYRCC | 5 cut(s) | 554, 1033, 2323, 3004, 3364 |
| BshVI | ATCGAT | 2 cut(s) | 687, 1083 |
| BsiEI | CGRYCG | 1 cut(s) | 1044 |
| BsiHKAI | GWGCWC | 7 cut(s) | 487, 1005, 1127, 1567, 2121, 2581, 3589 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1672 |
| BsiSI | CCGG | 7 cut(s) | 266, 1006, 1201, 1491, 3117, 3288, 3890 |
| BslFI | GGGAC | 3 cut(s) | 292, 3703, 3804 |
| BsmAI | GTCTC | 4 cut(s) | 526, 1493, 3152, 3461 |
| BsmFI | GGGAC | 3 cut(s) | 292, 3703, 3804 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 7 cut(s) | 1043, 1251, 2480, 2492, 3042, 3194, 3224 |
| Bso31I | GGTCTC | 2 cut(s) | 3152, 3461 |
| BsoBI | CYCGRG | 1 cut(s) | 1672 |
| Bsp120I | GGGCCC | 1 cut(s) | 3040 |
| Bsp13I | TCCGGA | 1 cut(s) | 3116 |
| Bsp1407I | TGTACA | 1 cut(s) | 2749 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 905, 2436 |
| Bsp19I | CCATGG | 2 cut(s) | 626, 2493 |
| BspANI | GGCC | 7 cut(s) | 1043, 1251, 2480, 2492, 3042, 3194, 3224 |
| BspDI | ATCGAT | 2 cut(s) | 687, 1083 |
| BspEI | TCCGGA | 1 cut(s) | 3116 |
| BspFNI | CGCG | 2 cut(s) | 2589, 2917 |
| BspMI | ACCTGC | 6 cut(s) | 145, 901, 1003, 1342, 1390, 1897 |
| BspOI | GCTAGC | 2 cut(s) | 104, 2829 |
| BspPI | GGATC | 5 cut(s) | 474, 1491, 2148, 3719, 3755 |
| BspT107I | GGYRCC | 5 cut(s) | 554, 1033, 2323, 3004, 3364 |
| BspTNI | GGTCTC | 2 cut(s) | 3152, 3461 |
| BsrBI | CCGCTC | 1 cut(s) | 1062 |
| BsrGI | TGTACA | 1 cut(s) | 2749 |
| BsrI | ACTGG | 8 cut(s) | 37, 285, 715, 961, 1899, 2574, 3115, 3713 |
| BssNI | GRCGYC | 1 cut(s) | 1034 |
| BssSI | CACGAG | 1 cut(s) | 486 |
| BssT1I | CCWWGG | 5 cut(s) | 626, 1640, 2049, 2493, 3225 |
| Bst2BI | CACGAG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 9 cut(s) | 636, 914, 1553, 1652, 2336, 2659, 3163, 3399, 3408 |
| Bst4CI | ACNGT | 5 cut(s) | 520, 1506, 1585, 2893, 3660 |
| Bst6I | CTCTTC | 8 cut(s) | 1302, 1723, 2184, 2463, 2806, 2901, 2933, 3234 |
| BstACI | GRCGYC | 1 cut(s) | 1034 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 497, 3209 |
| BstAUI | TGTACA | 1 cut(s) | 2749 |
| BstBAI | YACGTR | 1 cut(s) | 747 |
| BstDSI | CCRYGG | 2 cut(s) | 626, 2493 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3085 |
| BstF5I | GGATG | 6 cut(s) | 385, 740, 1130, 1636, 1737, 3445 |
| BstFNI | CGCG | 2 cut(s) | 2589, 2917 |
| BstH2I | RGCGCY | 2 cut(s) | 1037, 1211 |
| BstHHI | GCGC | 4 cut(s) | 163, 1036, 1210, 2591 |
| BstMAI | GTCTC | 4 cut(s) | 526, 1493, 3152, 3461 |
| BstMCI | CGRYCG | 1 cut(s) | 1044 |
| BstNI | CCWGG | 9 cut(s) | 636, 914, 1553, 1652, 2336, 2659, 3163, 3399, 3408 |
| BstNSI | RCATGY | 3 cut(s) | 209, 682, 2422 |
| BstSFI | CTRYAG | 3 cut(s) | 1509, 2955, 3489 |
| BstSLI | GKGCMC | 3 cut(s) | 559, 1127, 3044 |
| BstUI | CGCG | 2 cut(s) | 2589, 2917 |
| BstV1I | GCAGC | 8 cut(s) | 410, 484, 1738, 2650, 2824, 2880, 3346, 3569 |
| BstV2I | GAAGAC | 5 cut(s) | 708, 732, 819, 1352, 1371 |
| BstX2I | RGATCY | 4 cut(s) | 466, 3314, 3711, 3760 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 841, 2266, 2342 |
| BstYI | RGATCY | 4 cut(s) | 466, 3314, 3711, 3760 |
| BstZI | CGGCCG | 1 cut(s) | 1041 |
| Bsu15I | ATCGAT | 2 cut(s) | 687, 1083 |
| BsuI | GTATCC | 1 cut(s) | 2581 |
| BsuRI | GGCC | 7 cut(s) | 1043, 1251, 2480, 2492, 3042, 3194, 3224 |
| BsuTUI | ATCGAT | 2 cut(s) | 687, 1083 |
| BtgI | CCRYGG | 2 cut(s) | 626, 2493 |
| BtsCI | GGATG | 6 cut(s) | 385, 740, 1130, 1636, 1737, 3445 |
| BtsI | GCAGTG | 2 cut(s) | 462, 2229 |
| BtsIMutI | CAGTG | 6 cut(s) | 90, 462, 1107, 1989, 2229, 2581 |
| BveI | ACCTGC | 6 cut(s) | 145, 901, 1003, 1342, 1390, 1897 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1768 |
| CfoI | GCGC | 4 cut(s) | 163, 1036, 1210, 2591 |
| Cfr13I | GGNCC | 6 cut(s) | 916, 1198, 2661, 3040, 3041, 3818 |
| ClaI | ATCGAT | 2 cut(s) | 687, 1083 |
| CseI | GACGC | 4 cut(s) | 93, 898, 1357, 2595 |
| CsiI | ACCWGGT | 1 cut(s) | 1551 |
| Csp6I | GTAC | 8 cut(s) | 261, 272, 443, 579, 2324, 2416, 2750, 3108 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3325, 3360 |
| CviQI | GTAC | 8 cut(s) | 261, 272, 443, 579, 2324, 2416, 2750, 3108 |
| DinI | GGCGCC | 1 cut(s) | 1035 |
| DraI | TTTAAA | 3 cut(s) | 138, 3655, 3901 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 653, 2261 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 653, 2261 |
| EaeI | YGGCCR | 3 cut(s) | 1041, 1249, 3222 |
| EagI | CGGCCG | 1 cut(s) | 1041 |
| Eam1104I | CTCTTC | 8 cut(s) | 1302, 1723, 2184, 2463, 2806, 2901, 2933, 3234 |
| EarI | CTCTTC | 8 cut(s) | 1302, 1723, 2184, 2463, 2806, 2901, 2933, 3234 |
| EciI | GGCGGA | 1 cut(s) | 2641 |
| Ecl136II | GAGCTC | 1 cut(s) | 1003 |
| EclXI | CGGCCG | 1 cut(s) | 1041 |
| Eco130I | CCWWGG | 5 cut(s) | 626, 1640, 2049, 2493, 3225 |
| Eco24I | GRGCYC | 4 cut(s) | 1005, 1118, 3044, 3512 |
| Eco31I | GGTCTC | 2 cut(s) | 3152, 3461 |
| Eco47I | GGWCC | 4 cut(s) | 916, 1198, 2661, 3818 |
| Eco52I | CGGCCG | 1 cut(s) | 1041 |
| Eco53kI | GAGCTC | 1 cut(s) | 1003 |
| Eco57I | CTGAAG | 2 cut(s) | 1704, 3750 |
| Eco72I | CACGTG | 1 cut(s) | 747 |
| Eco88I | CYCGRG | 1 cut(s) | 1672 |
| EcoICRI | GAGCTC | 1 cut(s) | 1003 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3085 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3040, 3041, 3818 |
| EcoRI | GAATTC | 2 cut(s) | 2960, 3523 |
| EcoRII | CCWGG | 9 cut(s) | 634, 912, 1551, 1650, 2334, 2657, 3161, 3397, 3406 |
| EcoT14I | CCWWGG | 5 cut(s) | 626, 1640, 2049, 2493, 3225 |
| EcoT22I | ATGCAT | 1 cut(s) | 3444 |
| EcoT38I | GRGCYC | 4 cut(s) | 1005, 1118, 3044, 3512 |
| EgeI | GGCGCC | 1 cut(s) | 1035 |
| EheI | GGCGCC | 1 cut(s) | 1035 |
| ErhI | CCWWGG | 5 cut(s) | 626, 1640, 2049, 2493, 3225 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 219, 251, 1983, 2015, 2490, 2522 |
| FaqI | GGGAC | 3 cut(s) | 292, 3703, 3804 |
| FauI | CCCGC | 1 cut(s) | 2873 |
| FbaI | TGATCA | 3 cut(s) | 618, 1414, 1747 |
| FblI | GTMKAC | 2 cut(s) | 2584, 3492 |
| FokI | GGATG | 6 cut(s) | 392, 727, 1117, 1623, 1724, 3432 |
| FriOI | GRGCYC | 4 cut(s) | 1005, 1118, 3044, 3512 |
| GlaI | GCGC | 4 cut(s) | 162, 1035, 1209, 2590 |
| GsaI | CCCAGC | 2 cut(s) | 1296, 1765 |
| GsuI | CTGGAG | 2 cut(s) | 1806, 2826 |
| HaeII | RGCGCY | 2 cut(s) | 1037, 1211 |
| HaeIII | GGCC | 7 cut(s) | 1043, 1251, 2480, 2492, 3042, 3194, 3224 |
| HapII | CCGG | 7 cut(s) | 266, 1006, 1201, 1491, 3117, 3288, 3890 |
| HgaI | GACGC | 4 cut(s) | 93, 898, 1357, 2595 |
| HhaI | GCGC | 4 cut(s) | 163, 1036, 1210, 2591 |
| Hin1I | GRCGYC | 1 cut(s) | 1034 |
| Hin6I | GCGC | 4 cut(s) | 161, 1034, 1208, 2589 |
| HinP1I | GCGC | 4 cut(s) | 161, 1034, 1208, 2589 |
| HincII | GTYRAC | 5 cut(s) | 356, 752, 2013, 2254, 2585 |
| HindII | GTYRAC | 5 cut(s) | 356, 752, 2013, 2254, 2585 |
| HindIII | AAGCTT | 1 cut(s) | 2105 |
| HpaII | CCGG | 7 cut(s) | 266, 1006, 1201, 1491, 3117, 3288, 3890 |
| Hpy99I | CGWCG | 3 cut(s) | 647, 2586, 2589 |
| HpyCH4III | ACNGT | 5 cut(s) | 520, 1506, 1585, 2893, 3660 |
| HpyCH4IV | ACGT | 4 cut(s) | 746, 793, 801, 875 |
| HpySE526I | ACGT | 4 cut(s) | 746, 793, 801, 875 |
| Hsp92I | GRCGYC | 1 cut(s) | 1034 |
| HspAI | GCGC | 4 cut(s) | 161, 1034, 1208, 2589 |
| KasI | GGCGCC | 1 cut(s) | 1033 |
| KflI | GGGWCCC | 1 cut(s) | 3818 |
| Kpn2I | TCCGGA | 1 cut(s) | 3116 |
| KpnI | GGTACC | 1 cut(s) | 2327 |
| Ksp22I | TGATCA | 3 cut(s) | 618, 1414, 1747 |
| Lsp1109I | GCAGC | 8 cut(s) | 410, 484, 1738, 2650, 2824, 2880, 3346, 3569 |
| MabI | ACCWGGT | 1 cut(s) | 1551 |
| MaeII | ACGT | 4 cut(s) | 746, 793, 801, 875 |
| MbiI | CCGCTC | 1 cut(s) | 1062 |
| MfeI | CAATTG | 1 cut(s) | 311 |
| MflI | RGATCY | 4 cut(s) | 466, 3314, 3711, 3760 |
| MlsI | TGGCCA | 2 cut(s) | 1251, 3224 |
| MluNI | TGGCCA | 2 cut(s) | 1251, 3224 |
| Mly113I | GGCGCC | 1 cut(s) | 1034 |
| MmeI | TCCRAC | 4 cut(s) | 699, 1938, 2356, 2727 |
| Mox20I | TGGCCA | 2 cut(s) | 1251, 3224 |
| Mph1103I | ATGCAT | 1 cut(s) | 3444 |
| MroI | TCCGGA | 1 cut(s) | 3116 |
| MroXI | GAANNNNTTC | 5 cut(s) | 218, 334, 2860, 3143, 3858 |
| MscI | TGGCCA | 2 cut(s) | 1251, 3224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 745 |
| Msp20I | TGGCCA | 2 cut(s) | 1251, 3224 |
| MspA1I | CMGCKG | 1 cut(s) | 966 |
| MspI | CCGG | 7 cut(s) | 266, 1006, 1201, 1491, 3117, 3288, 3890 |
| MunI | CAATTG | 1 cut(s) | 311 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 9 cut(s) | 636, 914, 1553, 1652, 2336, 2659, 3163, 3399, 3408 |
| MvnI | CGCG | 2 cut(s) | 2589, 2917 |
| NarI | GGCGCC | 1 cut(s) | 1034 |
| NciI | CCSGG | 2 cut(s) | 1491, 3289 |
| NcoI | CCATGG | 2 cut(s) | 626, 2493 |
| NheI | GCTAGC | 2 cut(s) | 100, 2825 |
| NmeAIII | GCCGAG | 2 cut(s) | 1300, 3373 |
| NmuCI | GTSAC | 4 cut(s) | 42, 1070, 1920, 3627 |
| NsiI | ATGCAT | 1 cut(s) | 3444 |
| NspI | RCATGY | 3 cut(s) | 209, 682, 2422 |
| PaqCI | CACCTGC | 1 cut(s) | 1342 |
| PciI | ACATGT | 1 cut(s) | 678 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 651, 1226 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PdmI | GAANNNNTTC | 5 cut(s) | 218, 334, 2860, 3143, 3858 |
| PflFI | GACNNNGTC | 1 cut(s) | 1504 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1574, 3426 |
| PfoI | TCCNGGA | 1 cut(s) | 912 |
| PluTI | GGCGCC | 1 cut(s) | 1037 |
| PmaCI | CACGTG | 1 cut(s) | 747 |
| PmlI | CACGTG | 1 cut(s) | 747 |
| Ppu21I | YACGTR | 1 cut(s) | 747 |
| PpuMI | RGGWCCY | 1 cut(s) | 3818 |
| PscI | ACATGT | 1 cut(s) | 678 |
| Psp124BI | GAGCTC | 1 cut(s) | 1005 |
| Psp1406I | AACGTT | 1 cut(s) | 875 |
| Psp5II | RGGWCCY | 1 cut(s) | 3818 |
| Psp6I | CCWGG | 9 cut(s) | 634, 912, 1551, 1650, 2334, 2657, 3161, 3397, 3406 |
| PspCI | CACGTG | 1 cut(s) | 747 |
| PspFI | CCCAGC | 2 cut(s) | 1292, 1761 |
| PspGI | CCWGG | 9 cut(s) | 634, 912, 1551, 1650, 2334, 2657, 3161, 3397, 3406 |
| PspOMI | GGGCCC | 1 cut(s) | 3040 |
| PspPI | GGNCC | 6 cut(s) | 916, 1198, 2661, 3040, 3041, 3818 |
| PspPPI | RGGWCCY | 1 cut(s) | 3818 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 2013, 2045, 2742, 2774 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1768 |
| PsuI | RGATCY | 4 cut(s) | 466, 3314, 3711, 3760 |
| PsyI | GACNNNGTC | 1 cut(s) | 1504 |
| RsaI | GTAC | 8 cut(s) | 262, 273, 444, 580, 2325, 2417, 2751, 3109 |
| RsaNI | GTAC | 8 cut(s) | 261, 272, 443, 579, 2324, 2416, 2750, 3108 |
| RseI | CAYNNNNRTG | 1 cut(s) | 745 |
| SacI | GAGCTC | 1 cut(s) | 1005 |
| SalI | GTCGAC | 1 cut(s) | 2583 |
| Sau96I | GGNCC | 6 cut(s) | 916, 1198, 2661, 3040, 3041, 3818 |
| SexAI | ACCWGGT | 1 cut(s) | 1551 |
| SfcI | CTRYAG | 3 cut(s) | 1509, 2955, 3489 |
| SfoI | GGCGCC | 1 cut(s) | 1035 |
| SgrDI | CGTCGACG | 1 cut(s) | 2583 |
| SinI | GGWCC | 4 cut(s) | 916, 1198, 2661, 3818 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 745 |
| SmlI | CTYRAG | 5 cut(s) | 185, 1793, 2084, 2932, 3324 |
| SmoI | CTYRAG | 5 cut(s) | 185, 1793, 2084, 2932, 3324 |
| SspDI | GGCGCC | 1 cut(s) | 1033 |
| SstI | GAGCTC | 1 cut(s) | 1005 |
| StyI | CCWWGG | 5 cut(s) | 626, 1640, 2049, 2493, 3225 |
| TaaI | ACNGT | 5 cut(s) | 520, 1506, 1585, 2893, 3660 |
| TaiI | ACGT | 4 cut(s) | 749, 796, 804, 878 |
| TaqI | TCGA | 7 cut(s) | 687, 1083, 1229, 1610, 2584, 2617, 3562 |
| TaqII | GACCGA | 1 cut(s) | 881 |
| TatI | WGTACW | 3 cut(s) | 260, 578, 2749 |
| TauI | GCSGC | 8 cut(s) | 404, 975, 1012, 1043, 1532, 2722, 2825, 2920 |
| TscAI | CASTG | 6 cut(s) | 97, 462, 1114, 1989, 2229, 2581 |
| TseFI | GTSAC | 4 cut(s) | 42, 1070, 1920, 3627 |
| TseI | GCWGC | 8 cut(s) | 398, 497, 1726, 2638, 2837, 2868, 3359, 3557 |
| Tsp45I | GTSAC | 4 cut(s) | 42, 1070, 1920, 3627 |
| TspGWI | ACGGA | 3 cut(s) | 340, 754, 3438 |
| TspRI | CASTG | 6 cut(s) | 97, 462, 1114, 1989, 2229, 2581 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1504 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1574, 3426 |
| VneI | GTGCAC | 1 cut(s) | 1123 |
| VpaK11BI | GGWCC | 4 cut(s) | 916, 1198, 2661, 3818 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3085 |
| XapI | RAATTY | 8 cut(s) | 1877, 2362, 2402, 2537, 2960, 3053, 3179, 3523 |
| XbaI | TCTAGA | 3 cut(s) | 721, 1429, 1604 |
| XceI | RCATGY | 3 cut(s) | 209, 682, 2422 |
| XmaJI | CCTAGG | 1 cut(s) | 1640 |
| XmiI | GTMKAC | 2 cut(s) | 2584, 3492 |
| XmnI | GAANNNNTTC | 5 cut(s) | 218, 334, 2860, 3143, 3858 |
| Zsp2I | ATGCAT | 1 cut(s) | 3444 |