BEST Arabidopsis thaliana protein match is COP1-interacting protein-related (TAIR AT1G72410.1)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14172 AT3G14172 AT3G14172 |
| fragaria_vesca | FvH4_6g35280 FvH4_6g35280 FvH4_6g35280 |
| malus_domestica | MD09G1177000.v1.1 MD17G1149300.v1.1 |
| prunus_persica | Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 |
| pyrus_communis | pycom09g09520 pycom17g14310 |
| rosa_chinensis | RchiOBHm_Chr2g0146661 |
| rosa_laevigata | RLG00000020212 |
| rosa_multiflora | Rmu_co8402929.1_g000001 Rmu_sc0001986.1_g000037 Rmu_sc0015720.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00099980 |
| rosa_rugosa | Rorug02G0395900 |
| rosa_samantha | Rh2AG452200 Rh2BG465100 Rh2CG439200 Rh2DG474100 |
| rosa_wichuraiana | Rw2G036940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 168 |
| AarI | CACCTGC | 1 cut(s) | 1684 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 995, 2600 |
| Acc36I | ACCTGC | 6 cut(s) | 134, 487, 1243, 1684, 1732, 2236 |
| Acc65I | GGTACC | 4 cut(s) | 106, 137, 239, 2662 |
| AccB1I | GGYRCC | 7 cut(s) | 106, 137, 239, 896, 1375, 2662, 3343 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1916, 2997, 3813 |
| AccBSI | CCGCTC | 3 cut(s) | 186, 1404, 2495 |
| AccI | GTMKAC | 2 cut(s) | 2923, 3879 |
| AccII | CGCG | 2 cut(s) | 2928, 3256 |
| AccIII | TCCGGA | 1 cut(s) | 3455 |
| AclI | AACGTT | 1 cut(s) | 1217 |
| AcoI | YGGCCR | 4 cut(s) | 155, 1383, 1591, 3561 |
| AcsI | RAATTY | 9 cut(s) | 2216, 2701, 2741, 2876, 3299, 3322, 3392, 3518, 3910 |
| AcuI | CTGAAG | 3 cut(s) | 1776, 2046, 4137 |
| AcvI | CACGTG | 1 cut(s) | 1089 |
| AcyI | GRCGYC | 1 cut(s) | 1376 |
| AflIII | ACRYGT | 2 cut(s) | 1020, 1088 |
| AgeI | ACCGGT | 1 cut(s) | 44 |
| AjnI | CCWGG | 9 cut(s) | 976, 1254, 1336, 1893, 1992, 2673, 2996, 3784, 3793 |
| Alw21I | GWGCWC | 8 cut(s) | 302, 829, 1347, 1469, 1909, 2460, 2920, 3976 |
| Alw26I | GTCTC | 5 cut(s) | 47, 868, 1835, 3491, 3848 |
| Alw44I | GTGCAC | 1 cut(s) | 1465 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2110, 3734 |
| Ama87I | CYCGRG | 2 cut(s) | 1628, 2014 |
| Aor13HI | TCCGGA | 1 cut(s) | 3455 |
| ApaI | GGGCCC | 1 cut(s) | 3383 |
| ApaLI | GTGCAC | 1 cut(s) | 1465 |
| ApeKI | GCWGC | 9 cut(s) | 740, 839, 1624, 2068, 2977, 3176, 3207, 3746, 3944 |
| ApoI | RAATTY | 9 cut(s) | 2216, 2701, 2741, 2876, 3299, 3322, 3392, 3518, 3910 |
| AsiGI | ACCGGT | 1 cut(s) | 44 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 560, 676, 3199, 3482, 4245 |
| Asp718I | GGTACC | 4 cut(s) | 106, 137, 239, 2662 |
| AspA2I | CCTAGG | 1 cut(s) | 1982 |
| AspLEI | GCGC | 3 cut(s) | 1378, 1552, 2930 |
| AspS9I | GGNCC | 7 cut(s) | 1258, 1540, 2677, 3000, 3379, 3380, 4205 |
| AsuC2I | CCSGG | 2 cut(s) | 208, 3676 |
| AsuHPI | GGTGA | 9 cut(s) | 378, 1658, 1684, 1708, 2321, 2696, 3783, 4263, 4291 |
| AsuII | TTCGAA | 1 cut(s) | 1862 |
| AsuNHI | GCTAGC | 2 cut(s) | 442, 3164 |
| AvaI | CYCGRG | 2 cut(s) | 1628, 2014 |
| AvaII | GGWCC | 5 cut(s) | 1258, 1540, 2677, 3000, 4205 |
| AvrII | CCTAGG | 1 cut(s) | 1982 |
| BaeGI | GKGCMC | 3 cut(s) | 901, 1469, 3383 |
| BalI | TGGCCA | 3 cut(s) | 157, 1593, 3563 |
| BamHI | GGATCC | 2 cut(s) | 38, 262 |
| BanI | GGYRCC | 7 cut(s) | 106, 137, 239, 896, 1375, 2662, 3343 |
| BanII | GRGCYC | 5 cut(s) | 302, 1347, 1460, 3383, 3899 |
| BauI | CACGAG | 1 cut(s) | 828 |
| BbrPI | CACGTG | 1 cut(s) | 1089 |
| BbsI | GAAGAC | 5 cut(s) | 1050, 1074, 1161, 1694, 1713 |
| Bbv12I | GWGCWC | 8 cut(s) | 302, 829, 1347, 1469, 1909, 2460, 2920, 3976 |
| BbvI | GCAGC | 9 cut(s) | 752, 826, 1636, 2080, 2989, 3163, 3219, 3733, 3956 |
| BceAI | ACGGC | 3 cut(s) | 803, 1180, 1370 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 990, 1024, 1415, 1449 |
| BciT130I | CCWGG | 9 cut(s) | 978, 1256, 1338, 1895, 1994, 2675, 2998, 3786, 3795 |
| BciVI | GTATCC | 1 cut(s) | 2920 |
| BclI | TGATCA | 4 cut(s) | 249, 960, 1756, 2089 |
| BcnI | CCSGG | 2 cut(s) | 208, 3676 |
| BcoDI | GTCTC | 5 cut(s) | 47, 868, 1835, 3491, 3848 |
| BfmI | CTRYAG | 3 cut(s) | 1851, 3294, 3876 |
| BfoI | RGCGCY | 2 cut(s) | 1379, 1553 |
| BfuAI | ACCTGC | 6 cut(s) | 134, 487, 1243, 1684, 1732, 2236 |
| BfuI | GTATCC | 1 cut(s) | 2920 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3539 |
| BglII | AGATCT | 3 cut(s) | 282, 3641, 3701 |
| BlnI | CCTAGG | 1 cut(s) | 1982 |
| BlpI | GCTNAGC | 1 cut(s) | 1247 |
| Bme18I | GGWCC | 5 cut(s) | 1258, 1540, 2677, 3000, 4205 |
| BmeT110I | CYCGRG | 2 cut(s) | 1628, 2014 |
| BmgT120I | GGNCC | 7 cut(s) | 1258, 1540, 2677, 3000, 3379, 3380, 4205 |
| BmrI | ACTGGG | 1 cut(s) | 1062 |
| BmtI | GCTAGC | 2 cut(s) | 446, 3168 |
| BmuI | ACTGGG | 1 cut(s) | 1062 |
| BpiI | GAAGAC | 5 cut(s) | 1050, 1074, 1161, 1694, 1713 |
| BpmI | CTGGAG | 2 cut(s) | 286, 3165 |
| Bpu10I | CCTNAGC | 1 cut(s) | 187 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1247 |
| Bpu14I | TTCGAA | 1 cut(s) | 1862 |
| BpuEI | CTTGAG | 5 cut(s) | 548, 2156, 2408, 3292, 3696 |
| BpuMI | CCSGG | 2 cut(s) | 208, 3676 |
| Bsa29I | ATCGAT | 1 cut(s) | 1425 |
| BsaAI | YACGTR | 1 cut(s) | 1089 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3070 |
| BsaHI | GRCGYC | 1 cut(s) | 1376 |
| BsaI | GGTCTC | 2 cut(s) | 3491, 3848 |
| BsaWI | WCCGGW | 5 cut(s) | 44, 607, 1542, 3455, 4276 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1649, 1679, 2807, 2837 |
| Bse118I | RCCGGY | 1 cut(s) | 44 |
| Bse1I | ACTGG | 9 cut(s) | 150, 379, 627, 1057, 1303, 2238, 2913, 3454, 4100 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3070 |
| BseAI | TCCGGA | 1 cut(s) | 3455 |
| BseBI | CCWGG | 9 cut(s) | 978, 1256, 1338, 1895, 1994, 2675, 2998, 3786, 3795 |
| BseCI | ATCGAT | 1 cut(s) | 1425 |
| BseGI | GGATG | 7 cut(s) | 1082, 1472, 1978, 2079, 3250, 3616, 3832 |
| BseJI | GATNNNNATC | 1 cut(s) | 3070 |
| BseNI | ACTGG | 9 cut(s) | 150, 379, 627, 1057, 1303, 2238, 2913, 3454, 4100 |
| BseRI | GAGGAG | 7 cut(s) | 350, 506, 1667, 1670, 2153, 2582, 4313 |
| BseSI | GKGCMC | 3 cut(s) | 901, 1469, 3383 |
| BseX3I | CGGCCG | 1 cut(s) | 1383 |
| BseXI | GCAGC | 9 cut(s) | 752, 826, 1636, 2080, 2989, 3163, 3219, 3733, 3956 |
| BseYI | CCCAGC | 3 cut(s) | 5, 1634, 2103 |
| BsgI | GTGCAG | 3 cut(s) | 648, 2565, 2994 |
| Bsh1236I | CGCG | 2 cut(s) | 2928, 3256 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1386 |
| BshNI | GGYRCC | 7 cut(s) | 106, 137, 239, 896, 1375, 2662, 3343 |
| BshTI | ACCGGT | 1 cut(s) | 44 |
| BshVI | ATCGAT | 1 cut(s) | 1425 |
| BsiEI | CGRYCG | 1 cut(s) | 1386 |
| BsiHKAI | GWGCWC | 8 cut(s) | 302, 829, 1347, 1469, 1909, 2460, 2920, 3976 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1628, 2014 |
| BsiSI | CCGG | 8 cut(s) | 45, 207, 608, 1348, 1543, 3456, 3675, 4277 |
| BslFI | GGGAC | 2 cut(s) | 634, 4090 |
| BsmAI | GTCTC | 5 cut(s) | 47, 868, 1835, 3491, 3848 |
| BsmFI | GGGAC | 2 cut(s) | 634, 4090 |
| BsmI | GAATGC | 1 cut(s) | 394 |
| Bso31I | GGTCTC | 2 cut(s) | 3491, 3848 |
| BsoBI | CYCGRG | 2 cut(s) | 1628, 2014 |
| Bsp119I | TTCGAA | 1 cut(s) | 1862 |
| Bsp120I | GGGCCC | 1 cut(s) | 3379 |
| Bsp13I | TCCGGA | 1 cut(s) | 3455 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1247 |
| Bsp19I | CCATGG | 3 cut(s) | 968, 2680, 2832 |
| BspDI | ATCGAT | 1 cut(s) | 1425 |
| BspEI | TCCGGA | 1 cut(s) | 3455 |
| BspFNI | CGCG | 2 cut(s) | 2928, 3256 |
| BspHI | TCATGA | 1 cut(s) | 216 |
| BspMI | ACCTGC | 6 cut(s) | 134, 487, 1243, 1684, 1732, 2236 |
| BspOI | GCTAGC | 2 cut(s) | 446, 3168 |
| BspT104I | TTCGAA | 1 cut(s) | 1862 |
| BspT107I | GGYRCC | 7 cut(s) | 106, 137, 239, 896, 1375, 2662, 3343 |
| BspTNI | GGTCTC | 2 cut(s) | 3491, 3848 |
| BsrBI | CCGCTC | 3 cut(s) | 186, 1404, 2495 |
| BsrFI | RCCGGY | 1 cut(s) | 44 |
| BsrI | ACTGG | 9 cut(s) | 150, 379, 627, 1057, 1303, 2238, 2913, 3454, 4100 |
| BssAI | RCCGGY | 1 cut(s) | 44 |
| BssNI | GRCGYC | 1 cut(s) | 1376 |
| BssSI | CACGAG | 1 cut(s) | 828 |
| BssT1I | CCWWGG | 7 cut(s) | 73, 968, 1982, 2388, 2680, 2832, 3564 |
| Bst2BI | CACGAG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 9 cut(s) | 978, 1256, 1338, 1895, 1994, 2675, 2998, 3786, 3795 |
| Bst4CI | ACNGT | 5 cut(s) | 862, 1292, 1848, 1927, 4047 |
| Bst6I | CTCTTC | 7 cut(s) | 1644, 2065, 2523, 2802, 3145, 3272, 3573 |
| BstACI | GRCGYC | 1 cut(s) | 1376 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 839, 1877, 3548 |
| BstBAI | YACGTR | 1 cut(s) | 1089 |
| BstBI | TTCGAA | 1 cut(s) | 1862 |
| BstC8I | GCNNGC | 9 cut(s) | 444, 1114, 1380, 1469, 2507, 2559, 3166, 3181, 3744 |
| BstDSI | CCRYGG | 3 cut(s) | 968, 2680, 2832 |
| BstF5I | GGATG | 7 cut(s) | 1082, 1472, 1978, 2079, 3250, 3616, 3832 |
| BstFNI | CGCG | 2 cut(s) | 2928, 3256 |
| BstH2I | RGCGCY | 2 cut(s) | 1379, 1553 |
| BstHHI | GCGC | 3 cut(s) | 1378, 1552, 2930 |
| BstMAI | GTCTC | 5 cut(s) | 47, 868, 1835, 3491, 3848 |
| BstMCI | CGRYCG | 1 cut(s) | 1386 |
| BstNI | CCWGG | 9 cut(s) | 978, 1256, 1338, 1895, 1994, 2675, 2998, 3786, 3795 |
| BstNSI | RCATGY | 3 cut(s) | 551, 1024, 2761 |
| BstSFI | CTRYAG | 3 cut(s) | 1851, 3294, 3876 |
| BstSLI | GKGCMC | 3 cut(s) | 901, 1469, 3383 |
| BstUI | CGCG | 2 cut(s) | 2928, 3256 |
| BstV1I | GCAGC | 9 cut(s) | 752, 826, 1636, 2080, 2989, 3163, 3219, 3733, 3956 |
| BstV2I | GAAGAC | 5 cut(s) | 1050, 1074, 1161, 1694, 1713 |
| BstX2I | RGATCY | 9 cut(s) | 38, 192, 262, 282, 808, 3641, 3701, 4098, 4147 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1183, 2605 |
| BstYI | RGATCY | 9 cut(s) | 38, 192, 262, 282, 808, 3641, 3701, 4098, 4147 |
| BstZI | CGGCCG | 1 cut(s) | 1383 |
| Bsu15I | ATCGAT | 1 cut(s) | 1425 |
| BsuI | GTATCC | 1 cut(s) | 2920 |
| BsuTUI | ATCGAT | 1 cut(s) | 1425 |
| BtgI | CCRYGG | 3 cut(s) | 968, 2680, 2832 |
| BtgZI | GCGATG | 1 cut(s) | 735 |
| BtsCI | GGATG | 7 cut(s) | 1082, 1472, 1978, 2079, 3250, 3616, 3832 |
| BtsI | GCAGTG | 1 cut(s) | 804 |
| BtsIMutI | CAGTG | 5 cut(s) | 432, 804, 1449, 2328, 2920 |
| BveI | ACCTGC | 6 cut(s) | 134, 487, 1243, 1684, 1732, 2236 |
| Cac8I | GCNNGC | 9 cut(s) | 444, 1114, 1380, 1469, 2507, 2559, 3166, 3181, 3744 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2110, 3734 |
| CciI | TCATGA | 1 cut(s) | 216 |
| CfoI | GCGC | 3 cut(s) | 1378, 1552, 2930 |
| Cfr10I | RCCGGY | 1 cut(s) | 44 |
| Cfr13I | GGNCC | 7 cut(s) | 1258, 1540, 2677, 3000, 3379, 3380, 4205 |
| ClaI | ATCGAT | 1 cut(s) | 1425 |
| CseI | GACGC | 4 cut(s) | 435, 1240, 1699, 2934 |
| CsiI | ACCWGGT | 1 cut(s) | 1893 |
| CspAI | ACCGGT | 1 cut(s) | 44 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3712, 3747 |
| DinI | GGCGCC | 1 cut(s) | 1377 |
| DraI | TTTAAA | 3 cut(s) | 480, 4042, 4288 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 995, 2600 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 995, 2600 |
| EaeI | YGGCCR | 4 cut(s) | 155, 1383, 1591, 3561 |
| EagI | CGGCCG | 1 cut(s) | 1383 |
| Eam1104I | CTCTTC | 7 cut(s) | 1644, 2065, 2523, 2802, 3145, 3272, 3573 |
| EarI | CTCTTC | 7 cut(s) | 1644, 2065, 2523, 2802, 3145, 3272, 3573 |
| Ecl136II | GAGCTC | 2 cut(s) | 300, 1345 |
| EclXI | CGGCCG | 1 cut(s) | 1383 |
| Eco130I | CCWWGG | 7 cut(s) | 73, 968, 1982, 2388, 2680, 2832, 3564 |
| Eco147I | AGGCCT | 1 cut(s) | 309 |
| Eco24I | GRGCYC | 5 cut(s) | 302, 1347, 1460, 3383, 3899 |
| Eco31I | GGTCTC | 2 cut(s) | 3491, 3848 |
| Eco47I | GGWCC | 5 cut(s) | 1258, 1540, 2677, 3000, 4205 |
| Eco52I | CGGCCG | 1 cut(s) | 1383 |
| Eco53kI | GAGCTC | 2 cut(s) | 300, 1345 |
| Eco57I | CTGAAG | 3 cut(s) | 1776, 2046, 4137 |
| Eco72I | CACGTG | 1 cut(s) | 1089 |
| Eco88I | CYCGRG | 2 cut(s) | 1628, 2014 |
| EcoICRI | GAGCTC | 2 cut(s) | 300, 1345 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3379, 3380, 4205 |
| EcoRI | GAATTC | 3 cut(s) | 3299, 3322, 3910 |
| EcoRII | CCWGG | 9 cut(s) | 976, 1254, 1336, 1893, 1992, 2673, 2996, 3784, 3793 |
| EcoT14I | CCWWGG | 7 cut(s) | 73, 968, 1982, 2388, 2680, 2832, 3564 |
| EcoT22I | ATGCAT | 1 cut(s) | 3831 |
| EcoT38I | GRGCYC | 5 cut(s) | 302, 1347, 1460, 3383, 3899 |
| EgeI | GGCGCC | 1 cut(s) | 1377 |
| EheI | GGCGCC | 1 cut(s) | 1377 |
| ErhI | CCWWGG | 7 cut(s) | 73, 968, 1982, 2388, 2680, 2832, 3564 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 74, 106, 561, 593, 2322, 2354, 2829, 2861 |
| FaqI | GGGAC | 2 cut(s) | 634, 4090 |
| FauI | CCCGC | 1 cut(s) | 3212 |
| FbaI | TGATCA | 4 cut(s) | 249, 960, 1756, 2089 |
| FblI | GTMKAC | 2 cut(s) | 2923, 3879 |
| FokI | GGATG | 7 cut(s) | 1069, 1459, 1965, 2066, 3257, 3623, 3819 |
| FriOI | GRGCYC | 5 cut(s) | 302, 1347, 1460, 3383, 3899 |
| GlaI | GCGC | 3 cut(s) | 1377, 1551, 2929 |
| GsaI | CCCAGC | 3 cut(s) | 9, 1638, 2107 |
| GsuI | CTGGAG | 2 cut(s) | 286, 3165 |
| HaeII | RGCGCY | 2 cut(s) | 1379, 1553 |
| HapII | CCGG | 8 cut(s) | 45, 207, 608, 1348, 1543, 3456, 3675, 4277 |
| HgaI | GACGC | 4 cut(s) | 435, 1240, 1699, 2934 |
| HhaI | GCGC | 3 cut(s) | 1378, 1552, 2930 |
| Hin1I | GRCGYC | 1 cut(s) | 1376 |
| Hin6I | GCGC | 3 cut(s) | 1376, 1550, 2928 |
| HinP1I | GCGC | 3 cut(s) | 1376, 1550, 2928 |
| HincII | GTYRAC | 4 cut(s) | 698, 1094, 2352, 2924 |
| HindII | GTYRAC | 4 cut(s) | 698, 1094, 2352, 2924 |
| HindIII | AAGCTT | 1 cut(s) | 2444 |
| HpaII | CCGG | 8 cut(s) | 45, 207, 608, 1348, 1543, 3456, 3675, 4277 |
| HphI | GGTGA | 9 cut(s) | 378, 1658, 1684, 1708, 2321, 2696, 3783, 4263, 4291 |
| Hpy99I | CGWCG | 3 cut(s) | 989, 2925, 2928 |
| HpyCH4III | ACNGT | 5 cut(s) | 862, 1292, 1848, 1927, 4047 |
| HpyCH4IV | ACGT | 5 cut(s) | 541, 1088, 1135, 1143, 1217 |
| HpySE526I | ACGT | 5 cut(s) | 541, 1088, 1135, 1143, 1217 |
| Hsp92I | GRCGYC | 1 cut(s) | 1376 |
| HspAI | GCGC | 3 cut(s) | 1376, 1550, 2928 |
| KasI | GGCGCC | 1 cut(s) | 1375 |
| Kpn2I | TCCGGA | 1 cut(s) | 3455 |
| KpnI | GGTACC | 4 cut(s) | 110, 141, 243, 2666 |
| Ksp22I | TGATCA | 4 cut(s) | 249, 960, 1756, 2089 |
| Lsp1109I | GCAGC | 9 cut(s) | 752, 826, 1636, 2080, 2989, 3163, 3219, 3733, 3956 |
| MabI | ACCWGGT | 1 cut(s) | 1893 |
| MaeII | ACGT | 5 cut(s) | 541, 1088, 1135, 1143, 1217 |
| MbiI | CCGCTC | 3 cut(s) | 186, 1404, 2495 |
| MfeI | CAATTG | 2 cut(s) | 653, 1026 |
| MflI | RGATCY | 9 cut(s) | 38, 192, 262, 282, 808, 3641, 3701, 4098, 4147 |
| MlsI | TGGCCA | 3 cut(s) | 157, 1593, 3563 |
| MluNI | TGGCCA | 3 cut(s) | 157, 1593, 3563 |
| Mly113I | GGCGCC | 1 cut(s) | 1376 |
| MmeI | TCCRAC | 4 cut(s) | 59, 2277, 2695, 3066 |
| Mox20I | TGGCCA | 3 cut(s) | 157, 1593, 3563 |
| Mph1103I | ATGCAT | 1 cut(s) | 3831 |
| MroI | TCCGGA | 1 cut(s) | 3455 |
| MroXI | GAANNNNTTC | 5 cut(s) | 560, 676, 3199, 3482, 4245 |
| MscI | TGGCCA | 3 cut(s) | 157, 1593, 3563 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1087 |
| Msp20I | TGGCCA | 3 cut(s) | 157, 1593, 3563 |
| MspI | CCGG | 8 cut(s) | 45, 207, 608, 1348, 1543, 3456, 3675, 4277 |
| MunI | CAATTG | 2 cut(s) | 653, 1026 |
| Mva1269I | GAATGC | 1 cut(s) | 394 |
| MvaI | CCWGG | 9 cut(s) | 978, 1256, 1338, 1895, 1994, 2675, 2998, 3786, 3795 |
| MvnI | CGCG | 2 cut(s) | 2928, 3256 |
| NarI | GGCGCC | 1 cut(s) | 1376 |
| NciI | CCSGG | 2 cut(s) | 208, 3676 |
| NcoI | CCATGG | 3 cut(s) | 968, 2680, 2832 |
| NheI | GCTAGC | 2 cut(s) | 442, 3164 |
| NmeAIII | GCCGAG | 2 cut(s) | 96, 1642 |
| NmuCI | GTSAC | 6 cut(s) | 384, 1412, 1556, 2259, 4014, 4373 |
| NsiI | ATGCAT | 1 cut(s) | 3831 |
| NspI | RCATGY | 3 cut(s) | 551, 1024, 2761 |
| NspV | TTCGAA | 1 cut(s) | 1862 |
| PagI | TCATGA | 1 cut(s) | 216 |
| PaqCI | CACCTGC | 1 cut(s) | 1684 |
| PceI | AGGCCT | 1 cut(s) | 309 |
| PciI | ACATGT | 1 cut(s) | 1020 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 993, 1568 |
| PctI | GAATGC | 1 cut(s) | 394 |
| PdmI | GAANNNNTTC | 5 cut(s) | 560, 676, 3199, 3482, 4245 |
| PflFI | GACNNNGTC | 1 cut(s) | 1846 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1916, 2997, 3813 |
| PfoI | TCCNGGA | 1 cut(s) | 1254 |
| PinAI | ACCGGT | 1 cut(s) | 44 |
| PluTI | GGCGCC | 1 cut(s) | 1379 |
| PmaCI | CACGTG | 1 cut(s) | 1089 |
| PmlI | CACGTG | 1 cut(s) | 1089 |
| Ppu21I | YACGTR | 1 cut(s) | 1089 |
| PpuMI | RGGWCCY | 1 cut(s) | 4205 |
| PscI | ACATGT | 1 cut(s) | 1020 |
| PsiI | TTATAA | 1 cut(s) | 168 |
| Psp124BI | GAGCTC | 2 cut(s) | 302, 1347 |
| Psp1406I | AACGTT | 1 cut(s) | 1217 |
| Psp5II | RGGWCCY | 1 cut(s) | 4205 |
| Psp6I | CCWGG | 9 cut(s) | 976, 1254, 1336, 1893, 1992, 2673, 2996, 3784, 3793 |
| PspCI | CACGTG | 1 cut(s) | 1089 |
| PspFI | CCCAGC | 3 cut(s) | 5, 1634, 2103 |
| PspGI | CCWGG | 9 cut(s) | 976, 1254, 1336, 1893, 1992, 2673, 2996, 3784, 3793 |
| PspOMI | GGGCCC | 1 cut(s) | 3379 |
| PspPI | GGNCC | 7 cut(s) | 1258, 1540, 2677, 3000, 3379, 3380, 4205 |
| PspPPI | RGGWCCY | 1 cut(s) | 4205 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2352, 2384 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2110, 3734 |
| PsuI | RGATCY | 9 cut(s) | 38, 192, 262, 282, 808, 3641, 3701, 4098, 4147 |
| PsyI | GACNNNGTC | 1 cut(s) | 1846 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1087 |
| SacI | GAGCTC | 2 cut(s) | 302, 1347 |
| SalI | GTCGAC | 1 cut(s) | 2922 |
| Sau96I | GGNCC | 7 cut(s) | 1258, 1540, 2677, 3000, 3379, 3380, 4205 |
| SexAI | ACCWGGT | 1 cut(s) | 1893 |
| SfcI | CTRYAG | 3 cut(s) | 1851, 3294, 3876 |
| SfoI | GGCGCC | 1 cut(s) | 1377 |
| SfuI | TTCGAA | 1 cut(s) | 1862 |
| SgrAI | CRCCGGYG | 1 cut(s) | 44 |
| SgrDI | CGTCGACG | 1 cut(s) | 2922 |
| SinI | GGWCC | 5 cut(s) | 1258, 1540, 2677, 3000, 4205 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1087 |
| SmlI | CTYRAG | 5 cut(s) | 527, 2135, 2423, 3271, 3711 |
| SmoI | CTYRAG | 5 cut(s) | 527, 2135, 2423, 3271, 3711 |
| SseBI | AGGCCT | 1 cut(s) | 309 |
| SspDI | GGCGCC | 1 cut(s) | 1375 |
| SstI | GAGCTC | 2 cut(s) | 302, 1347 |
| StuI | AGGCCT | 1 cut(s) | 309 |
| StyI | CCWWGG | 7 cut(s) | 73, 968, 1982, 2388, 2680, 2832, 3564 |
| TaaI | ACNGT | 5 cut(s) | 862, 1292, 1848, 1927, 4047 |
| TaiI | ACGT | 5 cut(s) | 544, 1091, 1138, 1146, 1220 |
| TaqI | TCGA | 6 cut(s) | 1425, 1571, 1862, 1952, 2923, 2956 |
| TatI | WGTACW | 2 cut(s) | 602, 920 |
| TauI | GCSGC | 8 cut(s) | 186, 746, 1317, 1354, 1385, 3061, 3164, 3259 |
| TscAI | CASTG | 5 cut(s) | 439, 804, 1456, 2328, 2920 |
| TseFI | GTSAC | 6 cut(s) | 384, 1412, 1556, 2259, 4014, 4373 |
| TseI | GCWGC | 9 cut(s) | 740, 839, 1624, 2068, 2977, 3176, 3207, 3746, 3944 |
| Tsp45I | GTSAC | 6 cut(s) | 384, 1412, 1556, 2259, 4014, 4373 |
| TspGWI | ACGGA | 3 cut(s) | 682, 1096, 3825 |
| TspRI | CASTG | 5 cut(s) | 439, 804, 1456, 2328, 2920 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1846 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1916, 2997, 3813 |
| VneI | GTGCAC | 1 cut(s) | 1465 |
| VpaK11BI | GGWCC | 5 cut(s) | 1258, 1540, 2677, 3000, 4205 |
| XapI | RAATTY | 9 cut(s) | 2216, 2701, 2741, 2876, 3299, 3322, 3392, 3518, 3910 |
| XbaI | TCTAGA | 3 cut(s) | 1063, 1771, 1946 |
| XceI | RCATGY | 3 cut(s) | 551, 1024, 2761 |
| XmaJI | CCTAGG | 1 cut(s) | 1982 |
| XmiI | GTMKAC | 2 cut(s) | 2923, 3879 |
| XmnI | GAANNNNTTC | 5 cut(s) | 560, 676, 3199, 3482, 4245 |
| Zsp2I | ATGCAT | 1 cut(s) | 3831 |