BEST Arabidopsis thaliana protein match is COP1-interacting protein-related (TAIR AT1G72410.1)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14172 AT3G14172 AT3G14172 |
| fragaria_vesca | FvH4_6g35280 FvH4_6g35280 FvH4_6g35280 |
| malus_domestica | MD09G1177000.v1.1 MD17G1149300.v1.1 |
| prunus_persica | Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 Prupe.3G036100_v2.0.a1 |
| pyrus_communis | pycom09g09520 pycom17g14310 |
| rosa_chinensis | RchiOBHm_Chr2g0146661 |
| rosa_laevigata | RLG00000020212 |
| rosa_multiflora | Rmu_co8402929.1_g000001 Rmu_sc0001986.1_g000037 Rmu_sc0015720.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00099980 |
| rosa_rugosa | Rorug02G0395900 |
| rosa_samantha | Rh2AG452200 Rh2BG465100 Rh2CG439200 Rh2DG474100 |
| rosa_wichuraiana | Rw2G036940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1094, 2570 |
| Acc36I | ACCTGC | 3 cut(s) | 586, 1342, 2206 |
| Acc65I | GGTACC | 2 cut(s) | 434, 2632 |
| AccB1I | GGYRCC | 5 cut(s) | 434, 995, 1474, 2632, 3313 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1886, 2967, 3783 |
| AccBSI | CCGCTC | 3 cut(s) | 249, 1503, 2465 |
| AccI | GTMKAC | 2 cut(s) | 2893, 3849 |
| AccII | CGCG | 4 cut(s) | 292, 2898, 3226, 4041 |
| AccIII | TCCGGA | 1 cut(s) | 3425 |
| AclI | AACGTT | 1 cut(s) | 1316 |
| AclWI | GGATC | 8 cut(s) | 157, 452, 465, 915, 1803, 2457, 4073, 4109 |
| AcoI | YGGCCR | 3 cut(s) | 1482, 1690, 3531 |
| AcsI | RAATTY | 9 cut(s) | 274, 2186, 2671, 2711, 2846, 3269, 3362, 3488, 3877 |
| AcuI | CTGAAG | 2 cut(s) | 2016, 4104 |
| AcvI | CACGTG | 1 cut(s) | 1188 |
| AcyI | GRCGYC | 1 cut(s) | 1475 |
| AfaI | GTAC | 9 cut(s) | 68, 436, 703, 714, 885, 1021, 2634, 2726, 3418 |
| AflIII | ACRYGT | 2 cut(s) | 1119, 1187 |
| AgeI | ACCGGT | 1 cut(s) | 1397 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3220 |
| AjnI | CCWGG | 9 cut(s) | 1075, 1353, 1435, 1863, 1962, 2643, 2966, 3754, 3763 |
| Alw26I | GTCTC | 5 cut(s) | 967, 1805, 3461, 3681, 3818 |
| Alw44I | GTGCAC | 1 cut(s) | 1564 |
| AlwI | GGATC | 8 cut(s) | 157, 452, 465, 915, 1803, 2457, 4073, 4109 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2080, 3704 |
| Ama87I | CYCGRG | 2 cut(s) | 311, 1984 |
| Aor13HI | TCCGGA | 1 cut(s) | 3425 |
| ApaI | GGGCCC | 1 cut(s) | 3353 |
| ApaLI | GTGCAC | 1 cut(s) | 1564 |
| ApoI | RAATTY | 9 cut(s) | 274, 2186, 2671, 2711, 2846, 3269, 3362, 3488, 3877 |
| AsiGI | ACCGGT | 1 cut(s) | 1397 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 659, 775, 3169, 3452 |
| Asp718I | GGTACC | 2 cut(s) | 434, 2632 |
| AspA2I | CCTAGG | 1 cut(s) | 1952 |
| AspLEI | GCGC | 4 cut(s) | 201, 1477, 1651, 2900 |
| AspS9I | GGNCC | 8 cut(s) | 412, 1357, 1639, 2970, 3349, 3350, 4172, 4263 |
| AsuC2I | CCSGG | 2 cut(s) | 189, 3646 |
| AsuHPI | GGTGA | 5 cut(s) | 184, 1714, 1757, 2666, 3753 |
| AsuII | TTCGAA | 2 cut(s) | 272, 424 |
| AsuNHI | GCTAGC | 3 cut(s) | 541, 3134, 4277 |
| AvaI | CYCGRG | 2 cut(s) | 311, 1984 |
| AvaII | GGWCC | 4 cut(s) | 1357, 1639, 2970, 4172 |
| AvrII | CCTAGG | 1 cut(s) | 1952 |
| BaeGI | GKGCMC | 3 cut(s) | 1000, 1568, 3353 |
| BalI | TGGCCA | 2 cut(s) | 1692, 3533 |
| BamHI | GGATCC | 1 cut(s) | 457 |
| BanI | GGYRCC | 5 cut(s) | 434, 995, 1474, 2632, 3313 |
| BanII | GRGCYC | 7 cut(s) | 284, 497, 1446, 1559, 3353, 3869, 4203 |
| BauI | CACGAG | 1 cut(s) | 927 |
| BbrPI | CACGTG | 1 cut(s) | 1188 |
| BbsI | GAAGAC | 3 cut(s) | 1149, 1173, 1260 |
| BceAI | ACGGC | 4 cut(s) | 399, 902, 1279, 1469 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1089, 1123, 1514, 1548, 4256, 4290 |
| BciT130I | CCWGG | 9 cut(s) | 1077, 1355, 1437, 1865, 1964, 2645, 2968, 3756, 3765 |
| BclI | TGATCA | 3 cut(s) | 444, 1059, 2059 |
| BcnI | CCSGG | 2 cut(s) | 189, 3646 |
| BcoDI | GTCTC | 5 cut(s) | 967, 1805, 3461, 3681, 3818 |
| BfmI | CTRYAG | 3 cut(s) | 1821, 3264, 3846 |
| BfoI | RGCGCY | 2 cut(s) | 1478, 1652 |
| BfuAI | ACCTGC | 3 cut(s) | 586, 1342, 2206 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3509 |
| BglII | AGATCT | 5 cut(s) | 477, 1708, 3611, 3671, 4239 |
| BlnI | CCTAGG | 1 cut(s) | 1952 |
| BlpI | GCTNAGC | 1 cut(s) | 1346 |
| Bme18I | GGWCC | 4 cut(s) | 1357, 1639, 2970, 4172 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3220 |
| BmeT110I | CYCGRG | 2 cut(s) | 311, 1984 |
| BmgT120I | GGNCC | 8 cut(s) | 412, 1357, 1639, 2970, 3349, 3350, 4172, 4263 |
| BmrI | ACTGGG | 1 cut(s) | 1161 |
| BmtI | GCTAGC | 3 cut(s) | 545, 3138, 4281 |
| BmuI | ACTGGG | 1 cut(s) | 1161 |
| BpiI | GAAGAC | 3 cut(s) | 1149, 1173, 1260 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 28, 1802, 1834 |
| BpmI | CTGGAG | 2 cut(s) | 481, 3135 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1346 |
| Bpu14I | TTCGAA | 2 cut(s) | 272, 424 |
| BpuEI | CTTGAG | 5 cut(s) | 647, 2126, 2378, 3262, 3666 |
| BpuMI | CCSGG | 2 cut(s) | 189, 3646 |
| Bsa29I | ATCGAT | 2 cut(s) | 1128, 1524 |
| BsaAI | YACGTR | 1 cut(s) | 1188 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3040 |
| BsaHI | GRCGYC | 1 cut(s) | 1475 |
| BsaI | GGTCTC | 3 cut(s) | 3461, 3681, 3818 |
| BsaWI | WCCGGW | 5 cut(s) | 146, 169, 1397, 1641, 3425 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2777, 2807 |
| Bse118I | RCCGGY | 1 cut(s) | 1397 |
| Bse1I | ACTGG | 5 cut(s) | 726, 1156, 2883, 3424, 4067 |
| Bse3DI | GCAATG | 1 cut(s) | 3210 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3040 |
| BseAI | TCCGGA | 1 cut(s) | 3425 |
| BseBI | CCWGG | 9 cut(s) | 1077, 1355, 1437, 1865, 1964, 2645, 2968, 3756, 3765 |
| BseCI | ATCGAT | 2 cut(s) | 1128, 1524 |
| BseGI | GGATG | 8 cut(s) | 826, 1181, 1571, 1948, 2049, 2879, 3586, 3802 |
| BseJI | GATNNNNATC | 1 cut(s) | 3040 |
| BseMI | GCAATG | 1 cut(s) | 3210 |
| BseNI | ACTGG | 5 cut(s) | 726, 1156, 2883, 3424, 4067 |
| BseRI | GAGGAG | 5 cut(s) | 605, 1766, 1769, 2123, 2552 |
| BseSI | GKGCMC | 3 cut(s) | 1000, 1568, 3353 |
| BseX3I | CGGCCG | 1 cut(s) | 1482 |
| BseYI | CCCAGC | 3 cut(s) | 1733, 2073, 4345 |
| BsgI | GTGCAG | 3 cut(s) | 747, 2535, 2964 |
| Bsh1236I | CGCG | 4 cut(s) | 292, 2898, 3226, 4041 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1485 |
| BshNI | GGYRCC | 5 cut(s) | 434, 995, 1474, 2632, 3313 |
| BshTI | ACCGGT | 1 cut(s) | 1397 |
| BshVI | ATCGAT | 2 cut(s) | 1128, 1524 |
| BsiEI | CGRYCG | 1 cut(s) | 1485 |
| BsiHKCI | CYCGRG | 2 cut(s) | 311, 1984 |
| BsiSI | CCGG | 8 cut(s) | 147, 170, 188, 1398, 1447, 1642, 3426, 3645 |
| BslFI | GGGAC | 3 cut(s) | 733, 4057, 4158 |
| BsmAI | GTCTC | 5 cut(s) | 967, 1805, 3461, 3681, 3818 |
| BsmFI | GGGAC | 3 cut(s) | 733, 4057, 4158 |
| Bso31I | GGTCTC | 3 cut(s) | 3461, 3681, 3818 |
| BsoBI | CYCGRG | 2 cut(s) | 311, 1984 |
| Bsp119I | TTCGAA | 2 cut(s) | 272, 424 |
| Bsp120I | GGGCCC | 1 cut(s) | 3349 |
| Bsp13I | TCCGGA | 1 cut(s) | 3425 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1346 |
| Bsp19I | CCATGG | 2 cut(s) | 1067, 2802 |
| BspDI | ATCGAT | 2 cut(s) | 1128, 1524 |
| BspEI | TCCGGA | 1 cut(s) | 3425 |
| BspFNI | CGCG | 4 cut(s) | 292, 2898, 3226, 4041 |
| BspMI | ACCTGC | 3 cut(s) | 586, 1342, 2206 |
| BspOI | GCTAGC | 3 cut(s) | 545, 3138, 4281 |
| BspPI | GGATC | 8 cut(s) | 157, 452, 465, 915, 1803, 2457, 4073, 4109 |
| BspT104I | TTCGAA | 2 cut(s) | 272, 424 |
| BspT107I | GGYRCC | 5 cut(s) | 434, 995, 1474, 2632, 3313 |
| BspTNI | GGTCTC | 3 cut(s) | 3461, 3681, 3818 |
| BsrBI | CCGCTC | 3 cut(s) | 249, 1503, 2465 |
| BsrDI | GCAATG | 1 cut(s) | 3210 |
| BsrFI | RCCGGY | 1 cut(s) | 1397 |
| BsrI | ACTGG | 5 cut(s) | 726, 1156, 2883, 3424, 4067 |
| BssAI | RCCGGY | 1 cut(s) | 1397 |
| BssNI | GRCGYC | 1 cut(s) | 1475 |
| BssSI | CACGAG | 1 cut(s) | 927 |
| BssT1I | CCWWGG | 5 cut(s) | 1067, 1952, 2358, 2802, 3534 |
| Bst2BI | CACGAG | 1 cut(s) | 927 |
| Bst2UI | CCWGG | 9 cut(s) | 1077, 1355, 1437, 1865, 1964, 2645, 2968, 3756, 3765 |
| Bst4CI | ACNGT | 6 cut(s) | 961, 1391, 1897, 4014, 4322, 4353 |
| Bst6I | CTCTTC | 7 cut(s) | 1743, 2035, 2493, 2772, 3115, 3242, 3543 |
| BstACI | GRCGYC | 1 cut(s) | 1475 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 216, 938, 1847, 2885, 3518 |
| BstBAI | YACGTR | 1 cut(s) | 1188 |
| BstBI | TTCGAA | 2 cut(s) | 272, 424 |
| BstDSI | CCRYGG | 3 cut(s) | 290, 1067, 2802 |
| BstF5I | GGATG | 8 cut(s) | 826, 1181, 1571, 1948, 2049, 2879, 3586, 3802 |
| BstFNI | CGCG | 4 cut(s) | 292, 2898, 3226, 4041 |
| BstH2I | RGCGCY | 2 cut(s) | 1478, 1652 |
| BstHHI | GCGC | 4 cut(s) | 201, 1477, 1651, 2900 |
| BstMAI | GTCTC | 5 cut(s) | 967, 1805, 3461, 3681, 3818 |
| BstMCI | CGRYCG | 1 cut(s) | 1485 |
| BstNI | CCWGG | 9 cut(s) | 1077, 1355, 1437, 1865, 1964, 2645, 2968, 3756, 3765 |
| BstNSI | RCATGY | 3 cut(s) | 650, 1123, 2731 |
| BstSFI | CTRYAG | 3 cut(s) | 1821, 3264, 3846 |
| BstSLI | GKGCMC | 3 cut(s) | 1000, 1568, 3353 |
| BstUI | CGCG | 4 cut(s) | 292, 2898, 3226, 4041 |
| BstV2I | GAAGAC | 3 cut(s) | 1149, 1173, 1260 |
| BstX2I | RGATCY | 9 cut(s) | 457, 477, 907, 1708, 3611, 3671, 4065, 4114, 4239 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2575 |
| BstYI | RGATCY | 9 cut(s) | 457, 477, 907, 1708, 3611, 3671, 4065, 4114, 4239 |
| BstZI | CGGCCG | 1 cut(s) | 1482 |
| Bsu15I | ATCGAT | 2 cut(s) | 1128, 1524 |
| BsuTUI | ATCGAT | 2 cut(s) | 1128, 1524 |
| BtgI | CCRYGG | 3 cut(s) | 290, 1067, 2802 |
| BtgZI | GCGATG | 1 cut(s) | 411 |
| BtsCI | GGATG | 8 cut(s) | 826, 1181, 1571, 1948, 2049, 2879, 3586, 3802 |
| BtsI | GCAGTG | 1 cut(s) | 903 |
| BtsIMutI | CAGTG | 4 cut(s) | 531, 903, 1548, 2890 |
| BveI | ACCTGC | 3 cut(s) | 586, 1342, 2206 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2080, 3704 |
| CfoI | GCGC | 4 cut(s) | 201, 1477, 1651, 2900 |
| Cfr10I | RCCGGY | 1 cut(s) | 1397 |
| Cfr13I | GGNCC | 8 cut(s) | 412, 1357, 1639, 2970, 3349, 3350, 4172, 4263 |
| Cfr42I | CCGCGG | 1 cut(s) | 293 |
| ClaI | ATCGAT | 2 cut(s) | 1128, 1524 |
| CseI | GACGC | 3 cut(s) | 534, 1339, 2904 |
| CsiI | ACCWGGT | 1 cut(s) | 1863 |
| Csp6I | GTAC | 9 cut(s) | 67, 435, 702, 713, 884, 1020, 2633, 2725, 3417 |
| CspAI | ACCGGT | 1 cut(s) | 1397 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3682, 3717 |
| CviQI | GTAC | 9 cut(s) | 67, 435, 702, 713, 884, 1020, 2633, 2725, 3417 |
| DinI | GGCGCC | 1 cut(s) | 1476 |
| DraI | TTTAAA | 2 cut(s) | 579, 4009 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1094, 2570 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3220 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1094, 2570 |
| EaeI | YGGCCR | 3 cut(s) | 1482, 1690, 3531 |
| EagI | CGGCCG | 1 cut(s) | 1482 |
| Eam1104I | CTCTTC | 7 cut(s) | 1743, 2035, 2493, 2772, 3115, 3242, 3543 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3220 |
| EarI | CTCTTC | 7 cut(s) | 1743, 2035, 2493, 2772, 3115, 3242, 3543 |
| EciI | GGCGGA | 1 cut(s) | 417 |
| Ecl136II | GAGCTC | 4 cut(s) | 282, 495, 1444, 4201 |
| EclXI | CGGCCG | 1 cut(s) | 1482 |
| Eco130I | CCWWGG | 5 cut(s) | 1067, 1952, 2358, 2802, 3534 |
| Eco147I | AGGCCT | 1 cut(s) | 128 |
| Eco24I | GRGCYC | 7 cut(s) | 284, 497, 1446, 1559, 3353, 3869, 4203 |
| Eco31I | GGTCTC | 3 cut(s) | 3461, 3681, 3818 |
| Eco32I | GATATC | 1 cut(s) | 3598 |
| Eco47I | GGWCC | 4 cut(s) | 1357, 1639, 2970, 4172 |
| Eco52I | CGGCCG | 1 cut(s) | 1482 |
| Eco53kI | GAGCTC | 4 cut(s) | 282, 495, 1444, 4201 |
| Eco57I | CTGAAG | 2 cut(s) | 2016, 4104 |
| Eco72I | CACGTG | 1 cut(s) | 1188 |
| Eco88I | CYCGRG | 2 cut(s) | 311, 1984 |
| EcoICRI | GAGCTC | 4 cut(s) | 282, 495, 1444, 4201 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3349, 3350, 4172 |
| EcoRI | GAATTC | 2 cut(s) | 3269, 3877 |
| EcoRII | CCWGG | 9 cut(s) | 1075, 1353, 1435, 1863, 1962, 2643, 2966, 3754, 3763 |
| EcoRV | GATATC | 1 cut(s) | 3598 |
| EcoT14I | CCWWGG | 5 cut(s) | 1067, 1952, 2358, 2802, 3534 |
| EcoT22I | ATGCAT | 1 cut(s) | 3801 |
| EcoT38I | GRGCYC | 7 cut(s) | 284, 497, 1446, 1559, 3353, 3869, 4203 |
| EgeI | GGCGCC | 1 cut(s) | 1476 |
| EheI | GGCGCC | 1 cut(s) | 1476 |
| ErhI | CCWWGG | 5 cut(s) | 1067, 1952, 2358, 2802, 3534 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 660, 692, 2292, 2324, 2799, 2831 |
| FaqI | GGGAC | 3 cut(s) | 733, 4057, 4158 |
| FauI | CCCGC | 2 cut(s) | 3182, 4034 |
| FbaI | TGATCA | 3 cut(s) | 444, 1059, 2059 |
| FblI | GTMKAC | 2 cut(s) | 2893, 3849 |
| FokI | GGATG | 8 cut(s) | 833, 1168, 1558, 1935, 2036, 2866, 3593, 3789 |
| FriOI | GRGCYC | 7 cut(s) | 284, 497, 1446, 1559, 3353, 3869, 4203 |
| GlaI | GCGC | 4 cut(s) | 200, 1476, 1650, 2899 |
| GsaI | CCCAGC | 3 cut(s) | 1737, 2077, 4349 |
| GsuI | CTGGAG | 2 cut(s) | 481, 3135 |
| HaeII | RGCGCY | 2 cut(s) | 1478, 1652 |
| HapII | CCGG | 8 cut(s) | 147, 170, 188, 1398, 1447, 1642, 3426, 3645 |
| HgaI | GACGC | 3 cut(s) | 534, 1339, 2904 |
| HhaI | GCGC | 4 cut(s) | 201, 1477, 1651, 2900 |
| Hin1I | GRCGYC | 1 cut(s) | 1475 |
| Hin6I | GCGC | 4 cut(s) | 199, 1475, 1649, 2898 |
| HinP1I | GCGC | 4 cut(s) | 199, 1475, 1649, 2898 |
| HincII | GTYRAC | 5 cut(s) | 797, 1193, 2322, 2563, 2894 |
| HindII | GTYRAC | 5 cut(s) | 797, 1193, 2322, 2563, 2894 |
| HindIII | AAGCTT | 1 cut(s) | 2414 |
| HpaII | CCGG | 8 cut(s) | 147, 170, 188, 1398, 1447, 1642, 3426, 3645 |
| HphI | GGTGA | 5 cut(s) | 184, 1714, 1757, 2666, 3753 |
| Hpy99I | CGWCG | 5 cut(s) | 101, 256, 1088, 2895, 2898 |
| HpyCH4III | ACNGT | 6 cut(s) | 961, 1391, 1897, 4014, 4322, 4353 |
| HpyCH4IV | ACGT | 6 cut(s) | 75, 640, 1187, 1234, 1242, 1316 |
| HpySE526I | ACGT | 6 cut(s) | 75, 640, 1187, 1234, 1242, 1316 |
| Hsp92I | GRCGYC | 1 cut(s) | 1475 |
| HspAI | GCGC | 4 cut(s) | 199, 1475, 1649, 2898 |
| KasI | GGCGCC | 1 cut(s) | 1474 |
| KflI | GGGWCCC | 1 cut(s) | 4172 |
| Kpn2I | TCCGGA | 1 cut(s) | 3425 |
| KpnI | GGTACC | 2 cut(s) | 438, 2636 |
| Ksp22I | TGATCA | 3 cut(s) | 444, 1059, 2059 |
| KspI | CCGCGG | 1 cut(s) | 293 |
| MabI | ACCWGGT | 1 cut(s) | 1863 |
| MaeII | ACGT | 6 cut(s) | 75, 640, 1187, 1234, 1242, 1316 |
| MbiI | CCGCTC | 3 cut(s) | 249, 1503, 2465 |
| MfeI | CAATTG | 1 cut(s) | 752 |
| MflI | RGATCY | 9 cut(s) | 457, 477, 907, 1708, 3611, 3671, 4065, 4114, 4239 |
| MlsI | TGGCCA | 2 cut(s) | 1692, 3533 |
| MluNI | TGGCCA | 2 cut(s) | 1692, 3533 |
| Mly113I | GGCGCC | 1 cut(s) | 1475 |
| MlyI | GAGTC | 9 cut(s) | 1086, 1121, 1318, 1652, 1681, 1933, 2580, 3389, 3845 |
| MmeI | TCCRAC | 5 cut(s) | 234, 2247, 2665, 3036, 4202 |
| Mox20I | TGGCCA | 2 cut(s) | 1692, 3533 |
| Mph1103I | ATGCAT | 1 cut(s) | 3801 |
| MroI | TCCGGA | 1 cut(s) | 3425 |
| MroXI | GAANNNNTTC | 4 cut(s) | 659, 775, 3169, 3452 |
| MscI | TGGCCA | 2 cut(s) | 1692, 3533 |
| MslI | CAYNNNNRTG | 2 cut(s) | 74, 1186 |
| Msp20I | TGGCCA | 2 cut(s) | 1692, 3533 |
| MspA1I | CMGCKG | 3 cut(s) | 292, 1407, 4261 |
| MspI | CCGG | 8 cut(s) | 147, 170, 188, 1398, 1447, 1642, 3426, 3645 |
| MunI | CAATTG | 1 cut(s) | 752 |
| MvaI | CCWGG | 9 cut(s) | 1077, 1355, 1437, 1865, 1964, 2645, 2968, 3756, 3765 |
| MvnI | CGCG | 4 cut(s) | 292, 2898, 3226, 4041 |
| NarI | GGCGCC | 1 cut(s) | 1475 |
| NciI | CCSGG | 2 cut(s) | 189, 3646 |
| NcoI | CCATGG | 2 cut(s) | 1067, 2802 |
| NheI | GCTAGC | 3 cut(s) | 541, 3134, 4277 |
| NmeAIII | GCCGAG | 2 cut(s) | 207, 1741 |
| NmuCI | GTSAC | 3 cut(s) | 1511, 2229, 3981 |
| NsiI | ATGCAT | 1 cut(s) | 3801 |
| NspI | RCATGY | 3 cut(s) | 650, 1123, 2731 |
| NspV | TTCGAA | 2 cut(s) | 272, 424 |
| PaeR7I | CTCGAG | 1 cut(s) | 311 |
| PceI | AGGCCT | 1 cut(s) | 128 |
| PciI | ACATGT | 1 cut(s) | 1119 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 458, 1092, 1667 |
| PdmI | GAANNNNTTC | 4 cut(s) | 659, 775, 3169, 3452 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1886, 2967, 3783 |
| PfoI | TCCNGGA | 1 cut(s) | 1353 |
| PinAI | ACCGGT | 1 cut(s) | 1397 |
| PleI | GAGTC | 9 cut(s) | 1086, 1120, 1318, 1652, 1680, 1933, 2579, 3388, 3845 |
| PluTI | GGCGCC | 1 cut(s) | 1478 |
| PmaCI | CACGTG | 1 cut(s) | 1188 |
| PmlI | CACGTG | 1 cut(s) | 1188 |
| PpsI | GAGTC | 9 cut(s) | 1086, 1120, 1318, 1652, 1680, 1933, 2579, 3388, 3845 |
| Ppu21I | YACGTR | 1 cut(s) | 1188 |
| PpuMI | RGGWCCY | 1 cut(s) | 4172 |
| PscI | ACATGT | 1 cut(s) | 1119 |
| Psp124BI | GAGCTC | 4 cut(s) | 284, 497, 1446, 4203 |
| Psp1406I | AACGTT | 1 cut(s) | 1316 |
| Psp5II | RGGWCCY | 1 cut(s) | 4172 |
| Psp6I | CCWGG | 9 cut(s) | 1075, 1353, 1435, 1863, 1962, 2643, 2966, 3754, 3763 |
| PspCI | CACGTG | 1 cut(s) | 1188 |
| PspFI | CCCAGC | 3 cut(s) | 1733, 2073, 4345 |
| PspGI | CCWGG | 9 cut(s) | 1075, 1353, 1435, 1863, 1962, 2643, 2966, 3754, 3763 |
| PspOMI | GGGCCC | 1 cut(s) | 3349 |
| PspPI | GGNCC | 8 cut(s) | 412, 1357, 1639, 2970, 3349, 3350, 4172, 4263 |
| PspPPI | RGGWCCY | 1 cut(s) | 4172 |
| PspXI | VCTCGAGB | 1 cut(s) | 311 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2322, 2354 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2080, 3704 |
| PsuI | RGATCY | 9 cut(s) | 457, 477, 907, 1708, 3611, 3671, 4065, 4114, 4239 |
| RsaI | GTAC | 9 cut(s) | 68, 436, 703, 714, 885, 1021, 2634, 2726, 3418 |
| RsaNI | GTAC | 9 cut(s) | 67, 435, 702, 713, 884, 1020, 2633, 2725, 3417 |
| RseI | CAYNNNNRTG | 2 cut(s) | 74, 1186 |
| SacI | GAGCTC | 4 cut(s) | 284, 497, 1446, 4203 |
| SacII | CCGCGG | 1 cut(s) | 293 |
| SalI | GTCGAC | 1 cut(s) | 2892 |
| Sau96I | GGNCC | 8 cut(s) | 412, 1357, 1639, 2970, 3349, 3350, 4172, 4263 |
| SchI | GAGTC | 9 cut(s) | 1086, 1121, 1318, 1652, 1681, 1933, 2580, 3389, 3845 |
| SexAI | ACCWGGT | 1 cut(s) | 1863 |
| SfcI | CTRYAG | 3 cut(s) | 1821, 3264, 3846 |
| SfoI | GGCGCC | 1 cut(s) | 1476 |
| Sfr274I | CTCGAG | 1 cut(s) | 311 |
| Sfr303I | CCGCGG | 1 cut(s) | 293 |
| SfuI | TTCGAA | 2 cut(s) | 272, 424 |
| SgrBI | CCGCGG | 1 cut(s) | 293 |
| SgrDI | CGTCGACG | 1 cut(s) | 2892 |
| SinI | GGWCC | 4 cut(s) | 1357, 1639, 2970, 4172 |
| SlaI | CTCGAG | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 74, 1186 |
| SmlI | CTYRAG | 7 cut(s) | 13, 311, 626, 2105, 2393, 3241, 3681 |
| SmoI | CTYRAG | 7 cut(s) | 13, 311, 626, 2105, 2393, 3241, 3681 |
| SseBI | AGGCCT | 1 cut(s) | 128 |
| SspDI | GGCGCC | 1 cut(s) | 1474 |
| SstI | GAGCTC | 4 cut(s) | 284, 497, 1446, 4203 |
| StuI | AGGCCT | 1 cut(s) | 128 |
| StyI | CCWWGG | 5 cut(s) | 1067, 1952, 2358, 2802, 3534 |
| TaaI | ACNGT | 6 cut(s) | 961, 1391, 1897, 4014, 4322, 4353 |
| TaiI | ACGT | 6 cut(s) | 78, 643, 1190, 1237, 1245, 1319 |
| TaqII | GACCGA | 1 cut(s) | 1322 |
| TatI | WGTACW | 2 cut(s) | 701, 1019 |
| TscAI | CASTG | 4 cut(s) | 538, 903, 1555, 2890 |
| TseFI | GTSAC | 3 cut(s) | 1511, 2229, 3981 |
| Tsp45I | GTSAC | 3 cut(s) | 1511, 2229, 3981 |
| TspGWI | ACGGA | 3 cut(s) | 781, 1195, 3795 |
| TspRI | CASTG | 4 cut(s) | 538, 903, 1555, 2890 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1886, 2967, 3783 |
| VneI | GTGCAC | 1 cut(s) | 1564 |
| VpaK11BI | GGWCC | 4 cut(s) | 1357, 1639, 2970, 4172 |
| XapI | RAATTY | 9 cut(s) | 274, 2186, 2671, 2711, 2846, 3269, 3362, 3488, 3877 |
| XbaI | TCTAGA | 2 cut(s) | 1162, 1916 |
| XceI | RCATGY | 3 cut(s) | 650, 1123, 2731 |
| XhoI | CTCGAG | 1 cut(s) | 311 |
| XmaJI | CCTAGG | 1 cut(s) | 1952 |
| XmiI | GTMKAC | 2 cut(s) | 2893, 3849 |
| XmnI | GAANNNNTTC | 4 cut(s) | 659, 775, 3169, 3452 |
| Zsp2I | ATGCAT | 1 cut(s) | 3801 |