Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006541

Physical Location & Seq

Genomic Coordinates Reverse (-)

30449045 .. 30451627

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1239400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTTGAGTTGAACCCGGGTATACTAATAGATATTGTGGATGAAGAATGGATGAGAAACACTCTTCCTGATGACGAGCTTCCCCTACCACCAGTGCTTGTTGTACAGACTGATGACACTGCAGATTCAAATCAAGAGACTCAACAAGTTGATGCGGATGGTTGGCATGATCTTGCATTACCTTCCAGTGATTTTTCTTCTTCTTTTGGCAATGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010229 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0021700 GO:0022414 GO:0031461 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0061614 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04114 ko04120 ko04914 map04110 map04114 map04120 map04914

Pfam Domains

Protein Families

Apc13p

Protein Analysis

74

Amino Acids

8.01

Weight (kDa)

4.05

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73177
fragaria_vesca	FvH4_4g00490
malus_domestica	MD09G1239400.v1.1
prunus_persica	Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1 Prupe.3G122600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385941 RchiOBHm_Chr4g0387841 RchiOBHm_Chr4g0387941
rosa_multiflora	Rmu_sc0002509.1_g000032
rosa_roxburghii	Rroxscaffold_5G00334450 Rroxscaffold_5G00334490
rosa_rugosa	Rorug03G0303500 Rorug03G0303600 Rorug03G0313700 Rorug03G0313800 Rorug03G0313900 Rorug03G0314000
rosa_samantha	Rh4AG007700 Rh4AG019000 Rh4BG005700 Rh4CG008500 Rh4DG007200
rosa_wichuraiana	Rw4G000290 Rw4G001240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	1 cut(s)	155
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	13, 129
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	17, 18
AvaI	CYCGRG	1 cut(s)	16
BccI	CCATC	1 cut(s)	152
BcnI	CCSGG	2 cut(s)	17, 18
BcoDI	GTCTC	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	17, 18
BmeT110I	CYCGRG	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	17, 18
BmsI	GCATC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	46, 78
BpuMI	CCSGG	2 cut(s)	17, 18
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	92, 186
Bse3DI	GCAATG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	46, 57, 163
BseJI	GATNNNNATC	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	217
BseNI	ACTGG	2 cut(s)	92, 186
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	92, 186
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	169
BssNAI	GTATAC	1 cut(s)	23
Bst1107I	GTATAC	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	46, 57, 163
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	169
BstSCI	CCNGG	2 cut(s)	15, 16
BstSFI	CTRYAG	1 cut(s)	120
BstZ17I	GTATAC	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	46, 57, 163
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	99, 117, 193
Cfr9I	CCCGGG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	1 cut(s)	79
CviKI_1	RGCY	1 cut(s)	79
CviQI	GTAC	1 cut(s)	104
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	16
FaeI	CATG	1 cut(s)	170
FaiI	YATR	2 cut(s)	23, 168
FatI	CATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	22
FokI	GGATG	3 cut(s)	53, 64, 170
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	1 cut(s)	170
HinfI	GANTC	2 cut(s)	125, 139
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188III	TCNNGA	3 cut(s)	68, 134, 219
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	122, 176
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	4 cut(s)	30, 81, 105, 199
LweI	GCATC	1 cut(s)	142
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	4 cut(s)	56, 56, 189, 192
MlyI	GAGTC	1 cut(s)	133
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	17, 18
NciI	CCSGG	2 cut(s)	17, 18
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	2 cut(s)	17, 18
SetI	ASST	2 cut(s)	81, 184
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	120
SmaI	CCCGGG	1 cut(s)	18
SsiI	CCGC	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	15, 16
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	125
TscAI	CASTG	3 cut(s)	99, 124, 193
TspDTI	ATGAA	1 cut(s)	57
TspMI	CCCGGG	1 cut(s)	16
TspRI	CASTG	3 cut(s)	99, 124, 193
XmaI	CCCGGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.