Rorug03G0313700

Perakine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
33579928 .. 33581597
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0313700.1

Sequence Viewer

Length: 291 bp
ATGGATCAAAATTTTTGGACTTTGGAGAGAGAATCAATGCCGAGAAGACCCGACTGCTCCGGTGACTTTCGTGGCGGTTTCCGGCCACCGATTGACTTGCATGAGATGATAGGTGATACAGCAGGACAGACCACCAAAGTAATTCAAGATGCCAAGCCCATTGCTTCATCAACTGTCGAGACCATTTCACCAGCGGATCCTGTCGTGATTACTGGAACTGCTGGAGTAATATTCCTCACATACTTCCTTCTTCCTCCAATTTGGTCTGCTATCTCTTTTAACCTCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.61

Weight (kDa)

4.87

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 194
AclWI GGATC 3 cut(s) 12, 191, 204
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 10
AgsI TTSAA 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 3 cut(s) 12, 191, 204
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 10
AsuHPI GGTGA 3 cut(s) 74, 125, 180
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BcoDI GTCTC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 217
BshFI GGCC 1 cut(s) 85
BsiSI CCGG 2 cut(s) 60, 82
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 4, 196
BspACI CCGC 2 cut(s) 75, 194
BspANI GGCC 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 3 cut(s) 12, 191, 204
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 217
BssMI GATC 2 cut(s) 4, 196
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 284
BstKTI GATC 2 cut(s) 7, 199
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 4, 196
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 85
CviAII CATG 1 cut(s) 101
CviJI RGCY 2 cut(s) 85, 157
CviKI_1 RGCY 2 cut(s) 85, 157
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 6, 198
DpnII GATC 2 cut(s) 4, 196
EaeI YGGCCR 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 241
FatI CATG 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 85
HapII CCGG 2 cut(s) 60, 82
Hin1II CATG 1 cut(s) 104
HinfI GANTC 1 cut(s) 32
HpaII CCGG 2 cut(s) 60, 82
HphI GGTGA 3 cut(s) 74, 125, 180
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 3 cut(s) 146, 178, 205
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 2 cut(s) 4, 196
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 7 cut(s) 73, 95, 108, 198, 204, 207, 213
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 6, 198
MboI GATC 2 cut(s) 4, 196
MboII GAAGA 2 cut(s) 57, 242
MflI RGATCY 1 cut(s) 196
MluCI AATT 3 cut(s) 10, 141, 258
MnlI CCTC 2 cut(s) 245, 264
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 60, 82
NdeII GATC 2 cut(s) 4, 196
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 196
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 2 cut(s) 4, 196
SetI ASST 2 cut(s) 115, 285
SfaNI GCATC 1 cut(s) 139
Sse9I AATT 3 cut(s) 10, 141, 258
SsiI CCGC 2 cut(s) 75, 194
SspI AATATT 1 cut(s) 231
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 10, 141, 258
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.