RLG00000025673

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000149
Physical Location & Seq
Forward (+)
47510554 .. 47511855
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025673

Sequence Viewer

Length: 486 bp
ATGGTGCCTCCGCTACCAATTCCCATTACAAAGATGTCACCATATCTCAGGGAGCGTGGCATTGGAATTGTTCCATATTGTCCTCTTGGTTGTGGTTTTTTTGCAGGCAAAGCAGTTGTCGAAAGTTTGGATCCAAATGTTCCTGCGGCCGCACATCCTCGGCTCACTGGAGAGAACTTGGAGAAGAACAGACACATATACCATGCAATAGAAAGCCTTGCTACACAGCACCATTGCTCTCCTGCTCAACTAGCACTGTCTTGGGTTCTCCACCGAGGTGATGACGTTGTACCAATCCCCGGAACAACAAAGATAAAGAACTTGGATACCAACATTGGCTCCTTAAGTCTGCAACTCAAGGAAGACGACCTCAAAGAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCTGGTGATAAGACTTTCGAATTTTCGAGTCATGTGCAATGGAAATTTGCCAACACTCCTCAAAAGACTCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

162

Amino Acids

17.65

Weight (kDa)

6.36

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 10 - 129 5.4e-20 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 3 cut(s) 11, 146, 150
AclWI GGATC 2 cut(s) 125, 138
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 2 cut(s) 428, 452
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 299
AflII CTTAAG 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
AlwI GGATC 2 cut(s) 125, 138
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 428, 452
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 30, 290, 425
AsuII TTCGAA 1 cut(s) 426
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciVI GTATCC 1 cut(s) 319
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 343
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 2 cut(s) 147, 150
BlsI GCNGC 2 cut(s) 148, 151
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 3 cut(s) 6, 132, 340
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 158, 274, 298
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 232, 452
BseDI CCNNGG 3 cut(s) 158, 274, 298
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 2 cut(s) 232, 452
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 456
BseX3I CGGCCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 299
BsnI GGCC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 426
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 3 cut(s) 11, 146, 150
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 6, 132, 340
BspPI GGATC 2 cut(s) 125, 138
BspT104I TTCGAA 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 343
BsrDI GCAATG 2 cut(s) 232, 452
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 3 cut(s) 158, 274, 298
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 110, 251
BstSCI CCNGG 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 1 cut(s) 130
BstZI CGGCCG 1 cut(s) 147
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 165, 254
Cac8I GCNNGC 1 cut(s) 106
CciNI GCGGCCGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 290
CviAII CATG 2 cut(s) 203, 440
CviJI RGCY 5 cut(s) 149, 163, 216, 339, 410
CviKI_1 RGCY 5 cut(s) 149, 163, 216, 339, 410
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 147
FaeI CATG 2 cut(s) 206, 443
FaiI YATR 6 cut(s) 43, 76, 197, 199, 204, 441
FatI CATG 2 cut(s) 202, 439
Fnu4HI GCNGC 2 cut(s) 147, 150
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 147, 150
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 147, 150
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 300
Hin1II CATG 2 cut(s) 206, 443
HinfI GANTC 2 cut(s) 436, 475
HpaII CCGG 1 cut(s) 300
HphI GGTGA 3 cut(s) 30, 290, 425
Hpy188I TCNGA 2 cut(s) 385, 480
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 4 cut(s) 104, 206, 352, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 251
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 206, 443
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 52, 344
LpnPI CCDG 7 cut(s) 34, 90, 153, 156, 255, 313, 396
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 36
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 196, 374
MflI RGATCY 1 cut(s) 130
MluCI AATT 5 cut(s) 18, 66, 428, 452, 481
MlyI GAGTC 2 cut(s) 445, 469
MnlI CCTC 6 cut(s) 18, 93, 168, 269, 380, 477
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 343
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 110, 251
NciI CCSGG 1 cut(s) 300
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 206, 443
NlaIV GGNNCC 3 cut(s) 6, 132, 340
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 36
NotI GCGGCCGC 1 cut(s) 147
NspV TTCGAA 1 cut(s) 426
OliI CACNNNNGTG 1 cut(s) 276
PkrI GCNGC 2 cut(s) 148, 151
PleI GAGTC 2 cut(s) 444, 469
PpsI GAGTC 2 cut(s) 444, 469
PspN4I GGNNCC 3 cut(s) 6, 132, 340
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 2 cut(s) 147, 150
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 2 cut(s) 445, 469
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 280, 288, 372, 412
SfaNI GCATC 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 343, 356
SmoI CTYRAG 2 cut(s) 343, 356
Sse9I AATT 5 cut(s) 18, 66, 428, 452, 481
SsiI CCGC 3 cut(s) 11, 146, 150
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 258
TaiI ACGT 1 cut(s) 288
TaqI TCGA 4 cut(s) 120, 399, 426, 434
TasI AATT 5 cut(s) 18, 66, 428, 452, 481
TauI GCSGC 2 cut(s) 149, 152
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 172, 261
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspRI CASTG 2 cut(s) 172, 261
Vha464I CTTAAG 1 cut(s) 343
XapI RAATTY 2 cut(s) 428, 452
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.