RLG00000025679

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000149
Physical Location & Seq
Reverse (-)
47537282 .. 47539845
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025679

Sequence Viewer

Length: 978 bp
ATGGCTGAGGAGCAAAGAGTCCAAGTTTACAAGTTGGGATTTGAGTGTATGGGACTTTGTGGAATCTATAATGTGCCAGTTTCTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGGAATAACATTCTTCGATACATCAGATGTTTATGGACCACATGCTAATGAAGTTTTGATCGGAAAGGCATTGAAGCAGCTGCCTCAAGATAAGGTTCAGGTGGCTACAAAGATTGGAATTGTAAAGGCTGAGCCTGATAAAGCTAGCCTGAAGCGGCTTGATGTGGACTACATTGATCTTTACTATCAGCACCGGATAGATACATCAGTCCCCATAGAGGATACTATGGAGGAACTAAAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTAGATTATCTGAAGCTAGCCCAGACACAATAAGAAGGGCACATGCAGTTCATCCTATCGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAACAAATCGTCCCACTTTGCAGGGAACTTGGAATTGGGATAGTGCCATACAGCCCTCTTGGTCAAGGATTTTTTGGTGGCAGGGCAGTTGTGGAAGCTATACCATCAAGTAGTATTGTGGGATGGCTTCCTCGCTTTCAAGGAGACAACTTGGAGAAAAATAAAGACATCTATTCTAGAACACAAGAGTTGGCTGAAAAGCATGGGTGCTCCCCTGCACAACTAGCCCTTGCTTGGGTTCTTAGTCAAGGTGATGGTGATGGTGTTGTACCTATCCCTGGAACAACTAAGATAAACAATCTTGATGAAAATATTGGTTCCTTGGGAGTGAAACTAACTGAAGAAGATATGAAAGAGATTTCCAATATGATACCTACCAATATTGTGGTAGGGAATAATGCACCGCATATTTTCATCCGCTGCTCATGGAAATTTGCAAACACACCAACAGCAAAAAATAGCAAAATACCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

326

Amino Acids

36.12

Weight (kDa)

5.64

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 20 - 289 2.8e-68 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 492
AciI CCGC 3 cut(s) 280, 905, 919
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 4 cut(s) 105, 296, 429, 861
AfaI GTAC 3 cut(s) 113, 395, 771
AfiI CCNNNNNNNGG 4 cut(s) 343, 735, 736, 779
AgsI TTSAA 2 cut(s) 199, 641
AjnI CCWGG 1 cut(s) 778
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 5 cut(s) 205, 269, 370, 413, 599
AluI AGCT 5 cut(s) 205, 269, 370, 413, 599
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 2 cut(s) 483, 639
AlwNI CAGNNNCTG 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 202, 205, 458, 921
ApoI RAATTY 1 cut(s) 932
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 385, 764, 770
AsuNHI GCTAGC 2 cut(s) 269, 413
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 439
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
Bbv12I GWGCWC 1 cut(s) 713
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 192, 214, 445, 908
BccI CCATC 4 cut(s) 613, 618, 749, 755
BciT130I CCWGG 1 cut(s) 780
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 483, 639
BfaI CTAG 4 cut(s) 270, 414, 678, 725
BfmI CTRYAG 1 cut(s) 459
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 5 cut(s) 203, 206, 281, 459, 922
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 5 cut(s) 204, 207, 282, 460, 923
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 820
BmrFI CCNGG 1 cut(s) 780
BmtI GCTAGC 2 cut(s) 273, 417
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 778, 822
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 735, 736, 779
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 2 cut(s) 778, 822
BseGI GGATG 3 cut(s) 448, 629, 915
BseLI CCNNNNNNNGG 4 cut(s) 343, 735, 736, 779
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 4 cut(s) 192, 214, 445, 908
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 3 cut(s) 66, 320, 497
BslI CCNNNNNNNGG 4 cut(s) 343, 735, 736, 779
BsmAI GTCTC 2 cut(s) 483, 639
BsmFI GGGAC 3 cut(s) 66, 320, 497
Bso31I GGTCTC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 439, 713
Bsp143I GATC 3 cut(s) 105, 183, 301
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 3 cut(s) 280, 905, 919
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 820
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 2 cut(s) 273, 417
BspTNI GGTCTC 1 cut(s) 483
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 778, 822
BssMI GATC 3 cut(s) 105, 183, 301
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 780
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 271, 415
BstDEI CTNAG 4 cut(s) 6, 255, 743, 789
BstF5I GGATG 3 cut(s) 448, 629, 915
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 3 cut(s) 108, 186, 304
BstMAI GTCTC 2 cut(s) 483, 639
BstMBI GATC 3 cut(s) 105, 183, 301
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 2 cut(s) 170, 443
BstSCI CCNGG 1 cut(s) 778
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 4 cut(s) 192, 214, 445, 908
BstXI CCANNNNNNTGG 1 cut(s) 886
BsuI GTATCC 1 cut(s) 340
BtsCI GGATG 3 cut(s) 448, 629, 915
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 271, 415
CaiI CAGNNNCTG 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 112, 394, 770
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 4 cut(s) 167, 440, 704, 927
CviQI GTAC 3 cut(s) 112, 394, 770
DdeI CTNAG 4 cut(s) 6, 255, 743, 789
DpnI GATC 3 cut(s) 107, 185, 303
DpnII GATC 3 cut(s) 105, 183, 301
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 822
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 4 cut(s) 105, 296, 429, 861
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 4 cut(s) 170, 443, 707, 930
FaqI GGGAC 3 cut(s) 66, 320, 497
FatI CATG 4 cut(s) 166, 439, 703, 926
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 203, 206, 281, 459, 922
FokI GGATG 3 cut(s) 435, 636, 902
Fsp4HI GCNGC 5 cut(s) 203, 206, 281, 459, 922
FspBI CTAG 4 cut(s) 270, 414, 678, 725
GluI GCNGC 5 cut(s) 203, 206, 281, 459, 922
HapII CCGG 1 cut(s) 319
Hin1II CATG 4 cut(s) 170, 443, 707, 930
HinfI GANTC 3 cut(s) 18, 63, 487
HpaII CCGG 1 cut(s) 319
HphI GGTGA 3 cut(s) 385, 764, 770
Hpy166II GTNNAC 2 cut(s) 28, 292
Hpy188I TCNGA 4 cut(s) 85, 151, 188, 409
Hpy188III TCNNGA 4 cut(s) 212, 491, 678, 803
Hpy8I GTNNAC 2 cut(s) 28, 292
HpyAV CCTTC 1 cut(s) 426
HpyCH4V TGCA 6 cut(s) 443, 461, 522, 719, 902, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 4 cut(s) 6, 255, 743, 789
Hsp92II CATG 4 cut(s) 170, 443, 707, 930
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 3 cut(s) 105, 183, 301
LmnI GCTCC 2 cut(s) 10, 716
Lsp1109I GCAGC 4 cut(s) 192, 214, 445, 908
MaeI CTAG 4 cut(s) 270, 414, 678, 725
MalI GATC 3 cut(s) 107, 185, 303
MboI GATC 3 cut(s) 105, 183, 301
MboII GAAGA 4 cut(s) 98, 130, 854, 857
MhlI GDGCHC 2 cut(s) 439, 713
MluCI AATT 3 cut(s) 243, 534, 932
MlyI GAGTC 2 cut(s) 27, 481
MnlI CCTC 8 cut(s) 119, 219, 337, 349, 373, 493, 567, 642
MseI TTAA 1 cut(s) 976
MslI CAYNNNNRTG 2 cut(s) 101, 171
MspA1I CMGCKG 2 cut(s) 205, 921
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 780
MvaI CCWGG 1 cut(s) 780
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 3 cut(s) 105, 183, 301
NheI GCTAGC 2 cut(s) 269, 413
NlaIII CATG 4 cut(s) 170, 443, 707, 930
NlaIV GGNNCC 1 cut(s) 820
NruI TCGCGA 1 cut(s) 492
NspI RCATGY 2 cut(s) 170, 443
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 5 cut(s) 204, 207, 282, 460, 923
PleI GAGTC 2 cut(s) 26, 481
PpsI GAGTC 2 cut(s) 26, 481
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 820
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 205
RruI TCGCGA 1 cut(s) 492
RsaI GTAC 3 cut(s) 113, 395, 771
RsaNI GTAC 3 cut(s) 112, 394, 770
RseI CAYNNNNRTG 2 cut(s) 101, 171
SaqAI TTAA 1 cut(s) 976
SatI GCNGC 5 cut(s) 203, 206, 281, 459, 922
Sau3AI GATC 3 cut(s) 105, 183, 301
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 2 cut(s) 27, 481
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 2 cut(s) 439, 713
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 101, 171
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 3 cut(s) 243, 534, 932
SsiI CCGC 3 cut(s) 280, 905, 919
SspI AATATT 2 cut(s) 814, 883
SspMI CTAG 4 cut(s) 270, 414, 678, 725
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 1 cut(s) 822
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 243, 534, 932
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 976
Tru9I TTAA 1 cut(s) 976
TseI GCWGC 4 cut(s) 202, 205, 458, 921
TspDTI ATGAA 5 cut(s) 189, 437, 822, 866, 904
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 932
XbaI TCTAGA 1 cut(s) 677
XceI RCATGY 2 cut(s) 170, 443
XspI CTAG 4 cut(s) 270, 414, 678, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.