RchiOBHm_Chr3g0451321

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000149
Physical Location & Seq
Forward (+)
2435035 .. 2437294
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41858

Sequence Viewer

Length: 981 bp
ATGGCTGAGGAGAAGGGAATACAGATTCCAAAAGTTAAACTTGGAACTCAGGGATTTGAGGTCTCAAAATTGGGGTTTGGATGCATGGGTCTCACTGGAATCACTTTCTTTGACACAGCTGATGCATATGGACCTCATACAAATGAAGTTCTTATTGGGAAGGCATTGAAGCAATTGCCAAGAGAAAAAATTCAATTAGCCACAAAGTTTGGTATTGCTGGAATTATGCATCCTCCTAGTATTAAAATCACAGGTACTCCGGAATATGTCCGGTCTTGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTACGGTGCCTATAGAGGAAACTATGGGTGAGCTGAAGAAACTTGTGGAAGAAGGAAAGATAAAGTACATTGGCTTATCTGAAGCCAGTCCGGACACAATAAGAAGGGCACATGCAGTTCATCCCATAACCGCTCTACAAATGGAGTGGTCACTCTGGACTCGTGATATTGAGGAAGAGATTAATCCACTTTGCAGGGAGCTTGGCATTGGAATAGTTCCATATAGTCCTCTTGGTGGTGGGTTTTTCGGTGGCAAAGCAGTTGCTGAAAGTGTGCCTTCAAATAGTTTTGTGTCATCGCGTCCTCGGTTTGTAGGAGAGAACTTGCAGAAAAACAAGACTATTTACAATCGACTGGAAAACCTTGCTGAAAAGCACCAATGCCTTACCGCTCAACTAGCATTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCAGGGACAACAAAGATAAGGAACCTGGATGCAAATATTGGCTCCTTGAAGGTGAAACTTGGGGAGGAAGACGTGAAAGAAGTTTCTGGTGCTGTACCACTAGACCAAGTCGCCGGTGGTAGAACTTGTGGAAACCTGATGCATTTGCAATGGCAATTCGCCAACACTCCTCCAAAAGAATCCAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

326

Amino Acids

35.85

Weight (kDa)

6.47

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 33 - 292 2.9e-70 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AccBSI CCGCTC 2 cut(s) 479, 737
AccII CGCG 1 cut(s) 646
AccIII TCCGGA 2 cut(s) 259, 436
AciI CCGC 2 cut(s) 477, 735
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 401, 447
AfaI GTAC 4 cut(s) 256, 413, 783, 885
AfiI CCNNNNNNNGG 2 cut(s) 581, 791
AgsI TTSAA 5 cut(s) 169, 194, 295, 627, 838
AjiI CACGTC 1 cut(s) 862
AjnI CCWGG 2 cut(s) 790, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AleI CACNNNNGTG 1 cut(s) 350
AluBI AGCT 4 cut(s) 119, 291, 379, 547
AluI AGCT 4 cut(s) 119, 291, 379, 547
Alw26I GTCTC 2 cut(s) 67, 95
AlwNI CAGNNNCTG 1 cut(s) 611
Aor13HI TCCGGA 2 cut(s) 259, 436
ApoI RAATTY 1 cut(s) 189
AseI ATTAAT 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 386, 853
AsuNHI GCTAGC 1 cut(s) 287
AvaII GGWCC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 352
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 864
BbvCI CCTCAGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 792, 815
BcoDI GTCTC 2 cut(s) 67, 95
BfaI CTAG 4 cut(s) 237, 288, 743, 890
BfmI CTRYAG 1 cut(s) 357
BglII AGATCT 1 cut(s) 975
Bme1390I CCNGG 2 cut(s) 792, 815
Bme18I GGWCC 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 862
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 3 cut(s) 354, 812, 832
BmrFI CCNGG 2 cut(s) 792, 815
BmsI GCATC 5 cut(s) 71, 112, 238, 808, 918
BmtI GCTAGC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 864
Bpu10I CCTNAGC 1 cut(s) 6
BsaI GGTCTC 2 cut(s) 67, 95
BsaJI CCNNGG 4 cut(s) 650, 766, 790, 791
BsaWI WCCGGW 3 cut(s) 259, 270, 436
BsaXI ACNNNNNCTCC 4 cut(s) 241, 271, 762, 792
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 791
Bse118I RCCGGY 1 cut(s) 902
Bse1I ACTGG 3 cut(s) 100, 432, 705
Bse3DI GCAATG 1 cut(s) 944
BseAI TCCGGA 2 cut(s) 259, 436
BseBI CCWGG 2 cut(s) 792, 815
BseDI CCNNGG 4 cut(s) 650, 766, 790, 791
BseGI GGATG 4 cut(s) 86, 229, 466, 823
BseLI CCNNNNNNNGG 2 cut(s) 581, 791
BseMI GCAATG 1 cut(s) 944
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 3 cut(s) 100, 432, 705
BseRI GAGGAG 2 cut(s) 23, 948
BseSI GKGCMC 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 646
BshNI GGYRCC 1 cut(s) 352
BsiSI CCGG 4 cut(s) 260, 271, 437, 903
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 2 cut(s) 581, 791
BsmAI GTCTC 2 cut(s) 67, 95
BsmFI GGGAC 1 cut(s) 808
Bso31I GGTCTC 2 cut(s) 67, 95
Bsp1286I GDGCHC 1 cut(s) 457
Bsp13I TCCGGA 2 cut(s) 259, 436
Bsp143I GATC 2 cut(s) 319, 975
BspACI CCGC 2 cut(s) 477, 735
BspCNI CTCAG 1 cut(s) 61
BspEI TCCGGA 2 cut(s) 259, 436
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 3 cut(s) 354, 812, 832
BspOI GCTAGC 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 352
BspTNI GGTCTC 2 cut(s) 67, 95
BsrBI CCGCTC 2 cut(s) 479, 737
BsrDI GCAATG 1 cut(s) 944
BsrFI RCCGGY 1 cut(s) 902
BsrI ACTGG 3 cut(s) 100, 432, 705
BssAI RCCGGY 1 cut(s) 902
BssECI CCNNGG 4 cut(s) 650, 766, 790, 791
BssMI GATC 2 cut(s) 319, 975
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 766
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 2 cut(s) 792, 815
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 6, 48
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 4 cut(s) 86, 229, 466, 823
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 2 cut(s) 322, 978
BstMAI GTCTC 2 cut(s) 67, 95
BstMBI GATC 2 cut(s) 319, 975
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNI CCWGG 2 cut(s) 792, 815
BstNSI RCATGY 1 cut(s) 461
BstSCI CCNGG 2 cut(s) 790, 813
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 1 cut(s) 975
BstYI RGATCY 1 cut(s) 975
BtgZI GCGATG 1 cut(s) 627
BtrI CACGTC 1 cut(s) 862
BtsCI GGATG 4 cut(s) 86, 229, 466, 823
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 902
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 2 cut(s) 287, 635
Csp6I GTAC 4 cut(s) 255, 412, 782, 884
CspCI CAANNNNNGTGG 4 cut(s) 190, 225, 473, 508
CviAII CATG 3 cut(s) 85, 458, 753
CviQI GTAC 4 cut(s) 255, 412, 782, 884
DdeI CTNAG 2 cut(s) 6, 48
DpnI GATC 2 cut(s) 321, 977
DpnII GATC 2 cut(s) 319, 975
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 766
Eco31I GGTCTC 2 cut(s) 67, 95
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 2 cut(s) 401, 447
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 790, 813
EcoT14I CCWWGG 1 cut(s) 766
EcoT22I ATGCAT 4 cut(s) 86, 127, 231, 933
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 3 cut(s) 88, 461, 756
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 607, 639
FaqI GGGAC 1 cut(s) 808
FatI CATG 3 cut(s) 84, 457, 752
FauNDI CATATG 1 cut(s) 127
FokI GGATG 4 cut(s) 93, 216, 453, 830
FspBI CTAG 4 cut(s) 237, 288, 743, 890
HapII CCGG 4 cut(s) 260, 271, 437, 903
HgaI GACGC 2 cut(s) 287, 635
Hin1II CATG 3 cut(s) 88, 461, 756
HinfI GANTC 4 cut(s) 25, 99, 505, 968
HpaII CCGG 4 cut(s) 260, 271, 437, 903
HphI GGTGA 2 cut(s) 386, 853
Hpy166II GTNNAC 2 cut(s) 310, 343
Hpy188I TCNGA 2 cut(s) 427, 980
Hpy188III TCNNGA 5 cut(s) 260, 302, 437, 502, 509
Hpy8I GTNNAC 2 cut(s) 310, 343
HpyAV CCTTC 6 cut(s) 7, 154, 392, 444, 633, 832
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 9 cut(s) 84, 125, 229, 461, 540, 673, 821, 931, 937
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 2 cut(s) 6, 48
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 3 cut(s) 88, 461, 756
Kpn2I TCCGGA 2 cut(s) 259, 436
Kzo9I GATC 2 cut(s) 319, 975
LmnI GCTCC 2 cut(s) 544, 836
LweI GCATC 5 cut(s) 71, 112, 238, 808, 918
MaeI CTAG 4 cut(s) 237, 288, 743, 890
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 1 cut(s) 495
MalI GATC 2 cut(s) 321, 977
MbiI CCGCTC 2 cut(s) 479, 737
MboI GATC 2 cut(s) 319, 975
MboII GAAGA 4 cut(s) 394, 407, 533, 869
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 975
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 6 cut(s) 68, 173, 189, 194, 222, 944
MlyI GAGTC 1 cut(s) 499
Mph1103I ATGCAT 4 cut(s) 86, 127, 231, 933
MroI TCCGGA 2 cut(s) 259, 436
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 3 cut(s) 36, 243, 528
MslI CAYNNNNRTG 3 cut(s) 141, 350, 751
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 4 cut(s) 260, 271, 437, 903
MspR9I CCNGG 2 cut(s) 792, 815
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 2 cut(s) 792, 815
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 1 cut(s) 743
NdeI CATATG 1 cut(s) 127
NdeII GATC 2 cut(s) 319, 975
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 3 cut(s) 88, 461, 756
NlaIV GGNNCC 3 cut(s) 354, 812, 832
NmuCI GTSAC 1 cut(s) 495
NsiI ATGCAT 4 cut(s) 86, 127, 231, 933
NspI RCATGY 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 350
PasI CCCWGGG 1 cut(s) 791
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 25, 99, 968
PflFI GACNNNGTC 1 cut(s) 896
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PshBI ATTAAT 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 790, 813
PspGI CCWGG 2 cut(s) 790, 813
PspN4I GGNNCC 3 cut(s) 354, 812, 832
PspPI GGNCC 1 cut(s) 131
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 975
PsyI GACNNNGTC 1 cut(s) 896
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 4 cut(s) 256, 413, 783, 885
RsaNI GTAC 4 cut(s) 255, 412, 782, 884
RseI CAYNNNNRTG 3 cut(s) 141, 350, 751
SaqAI TTAA 3 cut(s) 36, 243, 528
Sau3AI GATC 2 cut(s) 319, 975
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 499
ScrFI CCNGG 2 cut(s) 792, 815
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 5 cut(s) 71, 112, 238, 808, 918
SfcI CTRYAG 1 cut(s) 357
SgrAI CRCCGGYG 1 cut(s) 902
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 3 cut(s) 141, 350, 751
Sse9I AATT 6 cut(s) 68, 173, 189, 194, 222, 944
SsiI CCGC 2 cut(s) 477, 735
SspI AATATT 1 cut(s) 826
SspMI CTAG 4 cut(s) 237, 288, 743, 890
StyD4I CCNGG 2 cut(s) 790, 813
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 864
TaqI TCGA 1 cut(s) 697
TasI AATT 6 cut(s) 68, 173, 189, 194, 222, 944
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 3 cut(s) 25, 99, 968
Tru1I TTAA 3 cut(s) 36, 243, 528
Tru9I TTAA 3 cut(s) 36, 243, 528
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 495
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 2 cut(s) 159, 455
TspRI CASTG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 896
VpaK11BI GGWCC 1 cut(s) 131
VspI ATTAAT 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 1 cut(s) 189
XceI RCATGY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 4 cut(s) 237, 288, 743, 890
Zsp2I ATGCAT 4 cut(s) 86, 127, 231, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.