pycom12g21970

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000149
Physical Location & Seq
Reverse (-)
23028113 .. 23028808
696 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g21970.1

Sequence Viewer

Length: 498 bp
ATGGTTTTTTCGCCGGAAAAGCGGTTTTGGAGAAAGTGGATGCTACAGCTCATGGGGGTGGATATTAATTTCTTCCTTACATATGCGCATTTTTCTATGCTCTGCTCTGCTCACTGGGATGCACATCCTCGGCTGACAGGAGAGAACTTGGAGAAAAACAAACAGATATATCATCGAATCGAAAGCCTTGCTAAAAAACACGAATGCAGCGCTGCTCAACTAGCTCTCTCATGGGTTCTCCACAGAGGAAATGACGTTGTTCCGATCCCCGCTACACTGTTCATTCATGCTTTATTTGCTTCAAATTCCTCAGGGACGACGAAAATTAAGAACCCGGACGCGAACATTGGCGCTATGGCGCTGAAACTCGAGGAAGAGGACTTGAAAGAAATTTCCGATGCCGTGCCTCTGGACCAAGTGGCCGGCGAGAAAACTTTCGCGCATGCAATGCCCGTGCAATGGAAATTTGCCAACACTCCGCGAAGGAATCCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

8.57

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 48 - 133 2.7e-07 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
AccII CGCG 3 cut(s) 341, 440, 481
AciI CCGC 3 cut(s) 22, 270, 479
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 304, 390, 464
AfeI AGCGCT 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 459
AgsI TTSAA 2 cut(s) 303, 385
AluBI AGCT 2 cut(s) 49, 224
AluI AGCT 2 cut(s) 49, 224
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 368
Aor51HI AGCGCT 1 cut(s) 211
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 207, 212
ApoI RAATTY 3 cut(s) 304, 390, 464
AseI ATTAAT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 5 cut(s) 88, 212, 353, 361, 442
AspS9I GGNCC 1 cut(s) 412
AsuC2I CCSGG 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 1 cut(s) 412
AxyI CCTNAGG 1 cut(s) 310
BbvI GCAGC 2 cut(s) 199, 219
BceAI ACGGC 1 cut(s) 386
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 3 cut(s) 213, 354, 362
BisI GCNGC 2 cut(s) 208, 213
BlsI GCNGC 2 cut(s) 209, 214
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 3 cut(s) 30, 109, 388
BmuI ACTGGG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 119
Bse21I CCTNAGG 1 cut(s) 310
Bse3DI GCAATG 2 cut(s) 453, 464
Bse8I GATNNNNATC 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 3 cut(s) 45, 124, 124
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMI GCAATG 2 cut(s) 453, 464
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 2 cut(s) 199, 219
Bsh1236I CGCG 3 cut(s) 341, 440, 481
BshFI GGCC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 3 cut(s) 14, 335, 423
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 3 cut(s) 22, 270, 479
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 3 cut(s) 341, 440, 481
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 2 cut(s) 453, 464
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 369
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 424, 444
BstDEI CTNAG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 45, 124, 124
BstFNI CGCG 3 cut(s) 341, 440, 481
BstH2I RGCGCY 3 cut(s) 213, 354, 362
BstHHI GCGC 5 cut(s) 88, 212, 353, 361, 442
BstKTI GATC 1 cut(s) 267
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 4 cut(s) 19, 221, 296, 448
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 44
BstUI CGCG 3 cut(s) 341, 440, 481
BstV1I GCAGC 2 cut(s) 199, 219
Bsu36I CCTNAGG 1 cut(s) 310
BsuRI GGCC 1 cut(s) 422
BtsCI GGATG 3 cut(s) 45, 124, 124
BtsIMutI CAGTG 2 cut(s) 112, 275
Cac8I GCNNGC 2 cut(s) 424, 444
CfoI GCGC 5 cut(s) 88, 212, 353, 361, 442
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 412
CseI GACGC 1 cut(s) 347
CviAII CATG 4 cut(s) 52, 231, 287, 443
CviJI RGCY 5 cut(s) 49, 133, 186, 224, 422
CviKI_1 RGCY 5 cut(s) 49, 133, 186, 224, 422
DdeI CTNAG 1 cut(s) 310
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 368
FaeI CATG 4 cut(s) 55, 234, 290, 446
FaiI YATR 9 cut(s) 53, 82, 84, 98, 169, 232, 288, 356, 444
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 51, 230, 286, 442
FauI CCCGC 1 cut(s) 277
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 208, 213
FokI GGATG 3 cut(s) 52, 111, 131
Fsp4HI GCNGC 2 cut(s) 208, 213
FspAI RTGCGCAY 1 cut(s) 87
FspBI CTAG 1 cut(s) 221
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 5 cut(s) 87, 211, 352, 360, 441
GluI GCNGC 2 cut(s) 208, 213
HaeII RGCGCY 3 cut(s) 213, 354, 362
HaeIII GGCC 1 cut(s) 422
HapII CCGG 3 cut(s) 14, 335, 423
HgaI GACGC 1 cut(s) 347
HhaI GCGC 5 cut(s) 88, 212, 353, 361, 442
Hin1II CATG 4 cut(s) 55, 234, 290, 446
Hin6I GCGC 5 cut(s) 86, 210, 351, 359, 440
HinP1I GCGC 5 cut(s) 86, 210, 351, 359, 440
HinfI GANTC 2 cut(s) 177, 487
HpaII CCGG 3 cut(s) 14, 335, 423
Hpy188I TCNGA 3 cut(s) 264, 397, 492
Hpy188III TCNNGA 1 cut(s) 410
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 477
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 122, 207, 446, 457
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 221, 296, 448
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 4 cut(s) 55, 234, 290, 446
HspAI GCGC 5 cut(s) 86, 210, 351, 359, 440
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 7 cut(s) 27, 100, 123, 297, 348, 395, 436
Lsp1109I GCAGC 2 cut(s) 199, 219
LweI GCATC 3 cut(s) 30, 109, 388
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 255
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 64, 386
MluCI AATT 6 cut(s) 67, 304, 324, 390, 464, 493
MnlI CCTC 6 cut(s) 138, 239, 319, 364, 370, 417
MroNI GCCGGC 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 3 cut(s) 66, 327, 496
MslI CAYNNNNRTG 2 cut(s) 56, 117
MspI CCGG 3 cut(s) 14, 335, 423
MspR9I CCNGG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 209
MvnI CGCG 3 cut(s) 341, 440, 481
MwoI GCNNNNNNNGC 4 cut(s) 19, 221, 296, 448
NaeI GCCGGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 335
NdeI CATATG 1 cut(s) 82
NdeII GATC 1 cut(s) 264
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 4 cut(s) 55, 234, 290, 446
NmeAIII GCCGAG 1 cut(s) 109
NsbI TGCGCA 1 cut(s) 87
NspI RCATGY 1 cut(s) 446
PaeI GCATGC 1 cut(s) 446
PaeR7I CTCGAG 1 cut(s) 368
PctI GAATGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 177, 487
PkrI GCNGC 2 cut(s) 209, 214
PshBI ATTAAT 1 cut(s) 66
PspPI GGNCC 1 cut(s) 412
PspXI VCTCGAGB 1 cut(s) 368
RseI CAYNNNNRTG 2 cut(s) 56, 117
SaqAI TTAA 3 cut(s) 66, 327, 496
SatI GCNGC 2 cut(s) 208, 213
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 335
SetI ASST 3 cut(s) 51, 226, 258
SfaNI GCATC 3 cut(s) 30, 109, 388
SfcI CTRYAG 1 cut(s) 44
Sfr274I CTCGAG 1 cut(s) 368
SinI GGWCC 1 cut(s) 412
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 56, 117
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SphI GCATGC 1 cut(s) 446
Sse9I AATT 6 cut(s) 67, 304, 324, 390, 464, 493
SsiI CCGC 3 cut(s) 22, 270, 479
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 279
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 175, 180, 369
TasI AATT 6 cut(s) 67, 304, 324, 390, 464, 493
TfiI GAWTC 2 cut(s) 177, 487
Tru1I TTAA 3 cut(s) 66, 327, 496
Tru9I TTAA 3 cut(s) 66, 327, 496
TscAI CASTG 2 cut(s) 119, 282
TseI GCWGC 2 cut(s) 207, 212
TspDTI ATGAA 2 cut(s) 271, 275
TspRI CASTG 2 cut(s) 119, 282
VpaK11BI GGWCC 1 cut(s) 412
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 3 cut(s) 304, 390, 464
XceI RCATGY 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.