Rh3BG035600

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000149
Physical Location & Seq
Forward (+)
2349957 .. 2356742
6786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG035600.1

Sequence Viewer

Length: 930 bp
ATGGCTGTCCAAATTCCTAGAGTGAAACTCGGGAGTGAGGGATTTGAGGTTTCCAAGTTGGGACTTGGTTGTTTGGGACTTAGTGGATTCTACAATGCTCCACTAGCTGAAGAGGCTGGCATATCAATAATCAAGCATGCATTCGATAATGGAATCACGTTCTTTGATACATCAGATATTTATGGACCAGGAACTAATGAAGTTTTGATCGGAAAAGCATTGAAGCAGCTGCCTCGAGATAAGGTTCAGGTTGCTACAAAGTTTGCACCCTGTAGACCCATCAGTACCAATAGAGGATACCATGGAGCCATGGAGGAACTAAAGAAGTTGGTGAAGGAGGGGAAGATAAAGTACATCGGATTATCCGAAGCCAGCCCAGAAACAATAAAGAGAGCACATGCAGTTCATCCCATTACAGCTGTACAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAAGAAATCGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATATAGCCCTCTTGGTCAAGGATTTTTCGGTGGCAGGGCAGTTGTGGAAGCTATACCTGCAAAGAGTCATTTGGACTGGCTTCCTCGCTTTCAAGGGGAGAACTTGGAGAAAAACAAAGACCTTTATGCTGAAACACAGAGGTTGGCTGAAAAGCATGGATGTTCCCCTGCACAACTCGCGCTTTCTTGGGTTCTTACTCAAGGCGAAGATGTTGTACCTATCCCTGGGACTACTAAGATAAAGAATTTGGATGATAATATTGGTTCCTTGAGAGTGAAACTCACTAAAGAAGATATAGAAGAGATTTCTGATAAAATATCTATCAACAGAGTGCCTGGGAATAATGCACCCGATGCTTTTTTTCGCTGCTCATGGAAGTTTGCAAATACACCACCAGCAAAAGATGGCAAAATACCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

309

Amino Acids

33.89

Weight (kDa)

7.01

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 20 - 88 5.1e-14 Aldo/keto reductase family
Aldo_ket_red PF00248 101 - 274 6.8e-43 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 571
AccI GTMKAC 1 cut(s) 274
AccII CGCG 2 cut(s) 450, 686
AcsI RAATTY 2 cut(s) 12, 751
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 4 cut(s) 286, 353, 423, 723
AfiI CCNNNNNNNGG 1 cut(s) 731
AgsI TTSAA 2 cut(s) 223, 599
AjnI CCWGG 3 cut(s) 187, 730, 841
AluBI AGCT 4 cut(s) 107, 229, 419, 557
AluI AGCT 4 cut(s) 107, 229, 419, 557
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 441
Ama87I CYCGRG 2 cut(s) 29, 234
ApeKI GCWGC 3 cut(s) 226, 229, 873
ApoI RAATTY 2 cut(s) 12, 751
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 2 cut(s) 29, 234
AvaII GGWCC 1 cut(s) 185
BarI GAAGNNNNNNTAC 4 cut(s) 335, 367, 705, 737
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 3 cut(s) 216, 238, 860
BccI CCATC 2 cut(s) 287, 905
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 3 cut(s) 189, 732, 843
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 2 cut(s) 18, 104
BfmI CTRYAG 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 571
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 3 cut(s) 227, 230, 874
BlsI GCNGC 3 cut(s) 228, 231, 875
Bme1390I CCNGG 3 cut(s) 189, 732, 843
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 2 cut(s) 29, 234
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 307, 772
BmrFI CCNGG 3 cut(s) 189, 732, 843
BmsI GCATC 1 cut(s) 850
BplI GAGNNNNNCTC 4 cut(s) 12, 44, 771, 803
BpuEI CTTGAG 2 cut(s) 690, 796
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 301, 309, 730, 731, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse1I ACTGG 1 cut(s) 587
BseBI CCWGG 3 cut(s) 189, 732, 843
BseDI CCNNGG 5 cut(s) 301, 309, 730, 731, 842
BseGI GGATG 3 cut(s) 406, 671, 763
BseLI CCNNNNNNNGG 1 cut(s) 731
BseNI ACTGG 1 cut(s) 587
BseXI GCAGC 3 cut(s) 216, 238, 860
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 2 cut(s) 450, 686
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 2 cut(s) 29, 234
BslFI GGGAC 4 cut(s) 75, 90, 455, 748
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 4 cut(s) 75, 90, 455, 748
BsmI GAATGC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 441
BsoBI CYCGRG 2 cut(s) 29, 234
Bsp1286I GDGCHC 1 cut(s) 397
Bsp1407I TGTACA 1 cut(s) 421
Bsp143I GATC 1 cut(s) 207
Bsp19I CCATGG 2 cut(s) 301, 309
Bsp68I TCGCGA 1 cut(s) 450
BspFNI CGCG 2 cut(s) 450, 686
BspLI GGNNCC 2 cut(s) 307, 772
BspMI ACCTGC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 421
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 5 cut(s) 301, 309, 730, 731, 842
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 301, 309
Bst2UI CCWGG 3 cut(s) 189, 732, 843
Bst6I CTCTTC 2 cut(s) 105, 801
BstAPI GCANNNNNTGC 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 421
BstC8I GCNNGC 3 cut(s) 118, 138, 373
BstDEI CTNAG 2 cut(s) 80, 741
BstDSI CCRYGG 2 cut(s) 301, 309
BstF5I GGATG 3 cut(s) 406, 671, 763
BstFNI CGCG 2 cut(s) 450, 686
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 5 cut(s) 104, 113, 563, 683, 860
BstNI CCWGG 3 cut(s) 189, 732, 843
BstNSI RCATGY 2 cut(s) 140, 401
BstSCI CCNGG 3 cut(s) 187, 730, 841
BstSFI CTRYAG 1 cut(s) 271
BstUI CGCG 2 cut(s) 450, 686
BstV1I GCAGC 3 cut(s) 216, 238, 860
BsuI GTATCC 1 cut(s) 290
BtgI CCRYGG 2 cut(s) 301, 309
BtsCI GGATG 3 cut(s) 406, 671, 763
BtuMI TCGCGA 1 cut(s) 450
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 118, 138, 373
CfoI GCGC 1 cut(s) 688
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 4 cut(s) 285, 352, 422, 722
CspCI CAANNNNNGTGG 2 cut(s) 413, 448
CviAII CATG 6 cut(s) 137, 302, 310, 398, 662, 879
CviQI GTAC 4 cut(s) 285, 352, 422, 722
DdeI CTNAG 2 cut(s) 80, 741
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 105, 801
EarI CTCTTC 2 cut(s) 105, 801
Eco130I CCWWGG 2 cut(s) 301, 309
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 2 cut(s) 29, 234
EcoRII CCWGG 3 cut(s) 187, 730, 841
EcoT14I CCWWGG 2 cut(s) 301, 309
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 2 cut(s) 301, 309
FaeI CATG 6 cut(s) 140, 305, 313, 401, 665, 882
FaqI GGGAC 4 cut(s) 75, 90, 455, 748
FatI CATG 6 cut(s) 136, 301, 309, 397, 661, 878
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 227, 230, 874
FokI GGATG 3 cut(s) 393, 678, 770
Fsp4HI GCNGC 3 cut(s) 227, 230, 874
FspBI CTAG 2 cut(s) 18, 104
GlaI GCGC 1 cut(s) 687
GluI GCNGC 3 cut(s) 227, 230, 874
HhaI GCGC 1 cut(s) 688
Hin1II CATG 6 cut(s) 140, 305, 313, 401, 665, 882
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HinfI GANTC 5 cut(s) 87, 153, 445, 492, 571
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 5 cut(s) 175, 212, 359, 367, 817
Hpy188III TCNNGA 4 cut(s) 31, 236, 449, 496
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 8 cut(s) 140, 266, 401, 480, 566, 677, 854, 890
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 113, 563, 683, 860
HpyF3I CTNAG 2 cut(s) 80, 741
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 6 cut(s) 140, 305, 313, 401, 665, 882
HspAI GCGC 1 cut(s) 686
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 103, 305
Lsp1109I GCAGC 3 cut(s) 216, 238, 860
LweI GCATC 1 cut(s) 850
MaeI CTAG 2 cut(s) 18, 104
MaeII ACGT 1 cut(s) 158
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 6 cut(s) 122, 355, 473, 725, 809, 818
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 2 cut(s) 12, 751
MlyI GAGTC 2 cut(s) 439, 580
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 1 cut(s) 928
MspA1I CMGCKG 2 cut(s) 229, 419
MspR9I CCNGG 3 cut(s) 189, 732, 843
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 3 cut(s) 189, 732, 843
MvnI CGCG 2 cut(s) 450, 686
MwoI GCNNNNNNNGC 5 cut(s) 104, 113, 563, 683, 860
NcoI CCATGG 2 cut(s) 301, 309
NdeII GATC 1 cut(s) 207
NlaIII CATG 6 cut(s) 140, 305, 313, 401, 665, 882
NlaIV GGNNCC 2 cut(s) 307, 772
NruI TCGCGA 1 cut(s) 450
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 2 cut(s) 140, 401
PaeI GCATGC 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 234
PasI CCCWGGG 1 cut(s) 731
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 3 cut(s) 87, 153, 492
PkrI GCNGC 3 cut(s) 228, 231, 875
PleI GAGTC 2 cut(s) 439, 579
PpsI GAGTC 2 cut(s) 439, 579
Psp6I CCWGG 3 cut(s) 187, 730, 841
PspGI CCWGG 3 cut(s) 187, 730, 841
PspN4I GGNNCC 2 cut(s) 307, 772
PspPI GGNCC 1 cut(s) 185
PvuII CAGCTG 2 cut(s) 229, 419
RruI TCGCGA 1 cut(s) 450
RsaI GTAC 4 cut(s) 286, 353, 423, 723
RsaNI GTAC 4 cut(s) 285, 352, 422, 722
SaqAI TTAA 1 cut(s) 928
SatI GCNGC 3 cut(s) 227, 230, 874
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 439, 580
ScrFI CCNGG 3 cut(s) 189, 732, 843
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 850
SfcI CTRYAG 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 3 cut(s) 234, 705, 775
SmoI CTYRAG 3 cut(s) 234, 705, 775
SphI GCATGC 1 cut(s) 140
Sse9I AATT 2 cut(s) 12, 751
SspI AATATT 1 cut(s) 766
SspMI CTAG 2 cut(s) 18, 104
StyD4I CCNGG 3 cut(s) 187, 730, 841
StyI CCWWGG 2 cut(s) 301, 309
TaiI ACGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 144, 235
TasI AATT 2 cut(s) 12, 751
TatI WGTACW 2 cut(s) 351, 421
TfiI GAWTC 3 cut(s) 87, 153, 492
Tru1I TTAA 1 cut(s) 928
Tru9I TTAA 1 cut(s) 928
TseI GCWGC 3 cut(s) 226, 229, 873
TspDTI ATGAA 2 cut(s) 213, 395
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 2 cut(s) 12, 751
XceI RCATGY 2 cut(s) 140, 401
XhoI CTCGAG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 2 cut(s) 18, 104
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.