Rh3BG064800

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000149
Physical Location & Seq
Forward (+)
4345755 .. 4348350
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG064800.1

Sequence Viewer

Length: 1074 bp
ATGGCTGAGGTTGAGGGAGTCCGAATTCCGCGAGTGCAACTAGGAAATCAAGGATTTGAGGTTTCCAAGCTGGGATTTGGGTGTAGACGACTTACTGGGACATACAATGAAGTTGTAGTCAGTGAAGAGTTTGCATTATCAATCATCAAGCACGCATTTGATAAAGGAATAACATTCTTTGACACAGCAGATCTCTATGGACCACATACCAATGAAGTTTTAGTTGGAAAGGCATTGAAGCAGTTGCCTAGAGATAAAGTTCAGTTGGCTACAAAGTTTGGCATTGTAAGAATTGAGCCTGATGAAACTAGGATAATTAATGGGACTCCTGAGTATGTCCGCTCTTGTTGTGAGGCTAGCCTAAAGCGCCTTGATGTTGACTATATTGATCTTTACTATCAGCACCGCGTAGACACATCAGTTCCAATAGAGGACACTATGGGGGAACTAAAGAAACTGGTGGAAGAGGGGAAGATAAAATATATTGGATTATCTGAAGCTAGTCCAGAAACAATTCGGAGGGCACATGCAGTTCATCCCATTACGGCTATACAAATGGAGTGGTCTCTTTGGAGTCGCGAAATTGAGGAAAAATTTGTCCCACTTTGCAGGGAGCTTGGAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGATTTTTAGCTGTAGATGGTCTACCTGAAGATAGCTTTTTGCGTTCAACTCCTCGTTGTCAAGGAGACAACCTCAAGAAAAATAAGATCCTTCAAGGTAAAGTACAGAACTTGGCTGAAAAATATGGATGCACCCCTGCACAACTAGCACTTGCGTGGCTCATTGATCAACCCGATGTCTGCTGTGTGCCTGGTGTTGTACCTATATTTGGCACAACCAAGACTATAAATATTGATGCTAATGTTAGTTCTGTGAGAGTGAATCTATCTAAAGAAGATATACAAGAGATATCTGAGGCAATACCTATCAACGCAGCAGCAGGGTATAGGCTACCAGACTACTTACTTTCCTGCCTTTGGCAGTTTGCAGATACACCACCAAAAGCTAAAAAGCCATGCAACCAAAAGAAGCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

357

Amino Acids

39.84

Weight (kDa)

6.35

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 318 3.3e-72 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 3 cut(s) 85, 411, 676
AccII CGCG 3 cut(s) 31, 408, 579
AciI CCGC 3 cut(s) 29, 340, 406
AclWI GGATC 1 cut(s) 736
AcsI RAATTY 2 cut(s) 24, 593
AcuI CTGAAG 2 cut(s) 516, 702
AfaI GTAC 2 cut(s) 759, 855
AfiI CCNNNNNNNGG 2 cut(s) 863, 1011
AgsI TTSAA 3 cut(s) 238, 702, 749
AjnI CCWGG 1 cut(s) 844
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AleI CACNNNNGTG 1 cut(s) 808
AluBI AGCT 6 cut(s) 70, 500, 616, 665, 690, 1040
AluI AGCT 6 cut(s) 70, 500, 616, 665, 690, 1040
Alw26I GTCTC 2 cut(s) 570, 714
AlwI GGATC 1 cut(s) 736
ApeKI GCWGC 2 cut(s) 968, 971
ApoI RAATTY 2 cut(s) 24, 593
AseI ATTAAT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 980, 983
BccI CCATC 1 cut(s) 665
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 1 cut(s) 846
BclI TGATCA 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 570, 714
BfaI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 1 cut(s) 370
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 969, 972
BlsI GCNGC 2 cut(s) 970, 973
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 846
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 773, 880
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 711, 743
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 713
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 646
Bsc4I CCNNNNNNNGG 2 cut(s) 863, 1011
Bse1I ACTGG 2 cut(s) 100, 462
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 535, 788
BseLI CCNNNNNNNGG 2 cut(s) 863, 1011
BseMII CTCAG 2 cut(s) 321, 939
BseNI ACTGG 2 cut(s) 100, 462
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 2 cut(s) 980, 983
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 3 cut(s) 31, 408, 579
BslFI GGGAC 3 cut(s) 112, 337, 584
BslI CCNNNNNNNGG 2 cut(s) 863, 1011
BsmAI GTCTC 2 cut(s) 570, 714
BsmFI GGGAC 3 cut(s) 112, 337, 584
Bso31I GGTCTC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 4 cut(s) 190, 388, 741, 820
Bsp68I TCGCGA 1 cut(s) 579
BspACI CCGC 3 cut(s) 29, 340, 406
BspCNI CTCAG 2 cut(s) 322, 940
BspFNI CGCG 3 cut(s) 31, 408, 579
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 570
BsrBI CCGCTC 1 cut(s) 342
BsrI ACTGG 2 cut(s) 100, 462
BssECI CCNNGG 1 cut(s) 646
BssMI GATC 4 cut(s) 190, 388, 741, 820
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 846
Bst6I CTCTTC 2 cut(s) 120, 459
BstC8I GCNNGC 2 cut(s) 153, 358
BstDEI CTNAG 3 cut(s) 6, 330, 948
BstF5I GGATG 2 cut(s) 535, 788
BstFNI CGCG 3 cut(s) 31, 408, 579
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 4 cut(s) 193, 391, 744, 823
BstMAI GTCTC 2 cut(s) 570, 714
BstMBI GATC 4 cut(s) 190, 388, 741, 820
BstMWI GCNNNNNNNGC 2 cut(s) 366, 800
BstNI CCWGG 1 cut(s) 846
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 526
BstUI CGCG 3 cut(s) 31, 408, 579
BstV1I GCAGC 2 cut(s) 980, 983
BstX2I RGATCY 2 cut(s) 190, 741
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 2 cut(s) 190, 741
BtsCI GGATG 2 cut(s) 535, 788
BtsIMutI CAGTG 1 cut(s) 127
BtuMI TCGCGA 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 153, 358
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 758, 854
CspCI CAANNNNNGTGG 2 cut(s) 542, 577
CviAII CATG 2 cut(s) 527, 1050
CviQI GTAC 2 cut(s) 758, 854
DdeI CTNAG 3 cut(s) 6, 330, 948
DpnI GATC 4 cut(s) 192, 390, 743, 822
DpnII GATC 4 cut(s) 190, 388, 741, 820
Eam1104I CTCTTC 2 cut(s) 120, 459
EarI CTCTTC 2 cut(s) 120, 459
Eco130I CCWWGG 1 cut(s) 646
Eco31I GGTCTC 1 cut(s) 570
Eco32I GATATC 1 cut(s) 945
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 516, 702
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 844
EcoRV GATATC 1 cut(s) 945
EcoT14I CCWWGG 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 646
FaeI CATG 2 cut(s) 530, 1053
FaqI GGGAC 3 cut(s) 112, 337, 584
FatI CATG 2 cut(s) 526, 1049
FbaI TGATCA 1 cut(s) 820
FblI GTMKAC 3 cut(s) 85, 411, 676
Fnu4HI GCNGC 2 cut(s) 969, 972
FokI GGATG 2 cut(s) 522, 795
Fsp4HI GCNGC 2 cut(s) 969, 972
FspBI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 969, 972
GsaI CCCAGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 370
HhaI GCGC 1 cut(s) 369
Hin1II CATG 2 cut(s) 530, 1053
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 4 cut(s) 18, 325, 574, 916
Hpy166II GTNNAC 4 cut(s) 86, 379, 412, 677
Hpy188I TCNGA 4 cut(s) 23, 496, 519, 949
Hpy188III TCNNGA 4 cut(s) 329, 506, 578, 730
Hpy8I GTNNAC 4 cut(s) 86, 379, 412, 677
HpyAV CCTTC 1 cut(s) 755
HpyCH4V TGCA 8 cut(s) 37, 134, 530, 609, 786, 794, 1022, 1053
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 800
HpyF3I CTNAG 3 cut(s) 6, 330, 948
Hsp92II CATG 2 cut(s) 530, 1053
HspAI GCGC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 4 cut(s) 190, 388, 741, 820
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 2 cut(s) 980, 983
LweI GCATC 2 cut(s) 773, 880
MaeI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
MalI GATC 4 cut(s) 192, 390, 743, 822
MbiI CCGCTC 1 cut(s) 342
MboI GATC 4 cut(s) 190, 388, 741, 820
MboII GAAGA 5 cut(s) 137, 476, 484, 695, 941
MflI RGATCY 2 cut(s) 190, 741
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 7 cut(s) 24, 291, 315, 513, 582, 593, 621
MlyI GAGTC 3 cut(s) 27, 319, 583
MmeI TCCRAC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 210, 808
MspR9I CCNGG 1 cut(s) 846
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 3 cut(s) 31, 408, 579
MwoI GCNNNNNNNGC 2 cut(s) 366, 800
NdeII GATC 4 cut(s) 190, 388, 741, 820
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 2 cut(s) 530, 1053
NruI TCGCGA 1 cut(s) 579
NspI RCATGY 1 cut(s) 530
OliI CACNNNNGTG 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 916
PkrI GCNGC 2 cut(s) 970, 973
PleI GAGTC 3 cut(s) 26, 319, 582
PpsI GAGTC 3 cut(s) 26, 319, 582
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 844
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 190, 741
RruI TCGCGA 1 cut(s) 579
RsaI GTAC 2 cut(s) 759, 855
RsaNI GTAC 2 cut(s) 758, 854
RseI CAYNNNNRTG 2 cut(s) 210, 808
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 969, 972
Sau3AI GATC 4 cut(s) 190, 388, 741, 820
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 3 cut(s) 27, 319, 583
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 2 cut(s) 773, 880
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 210, 808
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 7 cut(s) 24, 291, 315, 513, 582, 593, 621
SsiI CCGC 3 cut(s) 29, 340, 406
SspI AATATT 1 cut(s) 886
SspMI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 1 cut(s) 646
TasI AATT 7 cut(s) 24, 291, 315, 513, 582, 593, 621
TatI WGTACW 1 cut(s) 757
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 968, 971
TspDTI ATGAA 4 cut(s) 123, 228, 318, 524
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 2 cut(s) 24, 593
XceI RCATGY 1 cut(s) 530
XmiI GTMKAC 3 cut(s) 85, 411, 676
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 6 cut(s) 41, 249, 309, 357, 501, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.