Rh3AG035600

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000149
Physical Location & Seq
Forward (+)
2384543 .. 2385247
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG035600.1

Sequence Viewer

Length: 414 bp
ATGGTGACATACAGCCCTCTTGGTCGTGGATTTTTTGCTGGCAAGGCAATGGTGGAAAGTTTGCCTGCAAATAGTTTTCTGCAATCACTTCCTCGTTGTCAAGGCGACAACCTTGAGAAAAACAAGATTCTTTATGGTAAAGTACAATACTTGGCTGAGAAACATGGATGCACCCCTGCACAACTCGCGCTTGCGTGGATTGTTCATCAAGGTGATCATGTGGTACCTATCCCTGGGACAACTAAGACTGAAAATATTGATGCTAATGTCGGTTCCTTGAGAGTGAAACTCACTGAAGAAGATATACAGGAGATATCTGATATGATACCCATCAATGCAGCGACAGGGAATAGAGTATCCGATAGTCTTATTCGCTGCTCTTGGAAGTTTGCAAATACACCACCAAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

137

Amino Acids

14.97

Weight (kDa)

7.73

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 2 - 107 5.3e-16 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AccII CGCG 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 144, 225
AfiI CCNNNNNNNGG 1 cut(s) 233
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
ApeKI GCWGC 2 cut(s) 338, 375
Asp718I GGTACC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 16, 224
BanI GGYRCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 288, 320
BbvI GCAGC 2 cut(s) 350, 362
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 1 cut(s) 214
BfaI CTAG 1 cut(s) 412
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 339, 376
BlsI GCNGC 2 cut(s) 340, 377
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 225, 274
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 158, 250
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpuEI CTTGAG 2 cut(s) 134, 298
BsaBI GATNNNNATC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 232, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 54
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 232, 233
BseGI GGATG 1 cut(s) 173
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 350, 362
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 225, 274
BspT107I GGYRCC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 232, 233
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 40, 66, 192
BstDEI CTNAG 2 cut(s) 156, 243
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 44, 185
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 350, 362
BsuI GTATCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 3 cut(s) 40, 66, 192
CfoI GCGC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 143, 224
CviAII CATG 2 cut(s) 164, 218
CviJI RGCY 3 cut(s) 15, 155, 411
CviKI_1 RGCY 3 cut(s) 15, 155, 411
CviQI GTAC 2 cut(s) 143, 224
DdeI CTNAG 2 cut(s) 156, 243
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 315
FaeI CATG 2 cut(s) 167, 221
FaiI YATR 6 cut(s) 10, 135, 165, 219, 305, 323
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 163, 217
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 339, 376
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 2 cut(s) 339, 376
FspBI CTAG 1 cut(s) 412
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 339, 376
HhaI GCGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 167, 221
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 127
HphI GGTGA 2 cut(s) 16, 224
Hpy188I TCNGA 2 cut(s) 319, 361
HpyCH4V TGCA 6 cut(s) 68, 82, 171, 179, 338, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 185
HpyF3I CTNAG 2 cut(s) 156, 243
Hsp92II CATG 2 cut(s) 167, 221
HspAI GCGC 1 cut(s) 188
KpnI GGTACC 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 24, 78, 189, 219, 246, 293, 330
Lsp1109I GCAGC 2 cut(s) 350, 362
LweI GCATC 2 cut(s) 158, 250
MaeI CTAG 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 308, 311
MnlI CCTC 2 cut(s) 27, 102
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 44, 185
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 167, 221
NlaIV GGNNCC 2 cut(s) 225, 274
NmuCI GTSAC 1 cut(s) 4
PasI CCCWGGG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 340, 377
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 225, 274
RsaI GTAC 2 cut(s) 144, 225
RsaNI GTAC 2 cut(s) 143, 224
RseI CAYNNNNRTG 1 cut(s) 210
SatI GCNGC 2 cut(s) 339, 376
Sau3AI GATC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 234
SetI ASST 4 cut(s) 114, 214, 229, 413
SfaNI GCATC 2 cut(s) 158, 250
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 113, 277
SmoI CTYRAG 2 cut(s) 113, 277
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 232
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 338, 375
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 298
XspI CTAG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.