Rh3BG029000

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000149
Physical Location & Seq
Reverse (-)
1927463 .. 1929484
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG029000.1

Sequence Viewer

Length: 996 bp
ATGGCTGAGGTTGAGGGAGTTAAAGTTCCGAGAGTGCATCTGGGAAGTCAGGGATTTGAGGTTTCCGAGCTGGGATTTGGGTGTAGACGGCTTACTGGGACATACAGCGAAGCTCTAATCAGTGAAGAGTTTGCATTATCATTGATCAAGCACGCATTCGATAAAGGAATAACATTCTTTGATACAGCAGATCTCTATGGACCACATGCCAATGAAGTTTTGGTTGGAAAGGCATTGAAGCAGTTGCCTAGAGACCAAGTTCAGTTGGCTACAAAGTTTGGCATTGTAAGAATTGAGCCTGATGAAACTAGGATAGTTAATGGGACTCCTGAACACATCAGTCCCAATAGAGGACACTATGGGGAACTAAAGAAGTTGGTGGAAGAAGGGAAGATAAAATACATTGGATTATCTGAAGCTAGTCCAGAAACAATTAGGAGGGCACATGCAGTTCATCCCATTACGGCTATACAAATGGAGTGGTCTCTTTGGACTCGCGAAATTAAGCAAGTATTCGTCCCACTTTGCAGGGAACTTGAAATTGGGATAGTGCCATACCACCCCCTTGGTCGTGGATTTTTAGCTATAGATGGTCTACCTGAAGATCGCTTTCTGCGTTCAATTCCTCGTTGTCAAGGAGACAACCTCAAGAAAAATAAGATCCTTCAGGGTAAAATATTGAAATTGGCTGAAAAATATGGATGCAACCCTGCACAACTCGCACTTGCGTGGATCGCTAATCAACCCGATGTCTGCTGTGTGACTGGTGTTGTACCTATATTTGGCACAACCAAGACTAAACATATTGATGCTAATGTTGGTTCCTTCAAAGTGAAGCTATCTAAAGAAGATATAAAAGAGATATCTGAGACAATACCTATCAACGCAGCGGCAGGTTACAGATTACCGGACTATTGCCTGCCCTGCCTTTGGCAGTGTGCAGATACACCACCAAAAGCTAGCAAGCAATGCAACCAGAAGAAGCCAATAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

331

Amino Acids

36.76

Weight (kDa)

8.58

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 113 1.2e-14 Aldo/keto reductase family
Aldo_ket_red PF00248 120 - 290 5.4e-34 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 884
AccI GTMKAC 2 cut(s) 85, 595
AccII CGCG 1 cut(s) 498
AciI CCGC 1 cut(s) 890
AclWI GGATC 2 cut(s) 655, 740
AcuI CTGAAG 3 cut(s) 435, 621, 650
AfaI GTAC 1 cut(s) 774
AfiI CCNNNNNNNGG 3 cut(s) 350, 782, 930
AgsI TTSAA 5 cut(s) 238, 539, 621, 682, 829
AjuI GAANNNNNNNTTGG 4 cut(s) 207, 239, 525, 557
AleI CACNNNNGTG 1 cut(s) 727
AloI GAACNNNNNNTCC 2 cut(s) 9, 41
AluBI AGCT 6 cut(s) 70, 113, 419, 584, 838, 959
AluI AGCT 6 cut(s) 70, 113, 419, 584, 838, 959
Alw26I GTCTC 4 cut(s) 246, 489, 633, 863
AlwI GGATC 2 cut(s) 655, 740
ApeKI GCWGC 1 cut(s) 887
AspS9I GGNCC 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 959
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 445
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 899
BccI CCATC 1 cut(s) 584
BceAI ACGGC 2 cut(s) 104, 480
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 4 cut(s) 246, 489, 633, 863
BfaI CTAG 4 cut(s) 249, 309, 420, 960
BfmI CTRYAG 1 cut(s) 585
BfuAI ACCTGC 1 cut(s) 884
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 888, 891
BlsI GCNGC 2 cut(s) 889, 892
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 823
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 3 cut(s) 46, 692, 799
BmtI GCTAGC 1 cut(s) 963
BmuI ACTGGG 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 630, 662
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 632
BsaI GGTCTC 2 cut(s) 246, 489
BsaJI CCNNGG 1 cut(s) 565
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 782, 930
Bse1I ACTGG 2 cut(s) 100, 769
Bse3DI GCAATG 1 cut(s) 974
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 2 cut(s) 454, 707
BseLI CCNNNNNNNGG 3 cut(s) 350, 782, 930
BseMI GCAATG 1 cut(s) 974
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 2 cut(s) 100, 769
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 1 cut(s) 899
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 2 cut(s) 696, 960
Bsh1236I CGCG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 4 cut(s) 112, 327, 337, 503
BslI CCNNNNNNNGG 3 cut(s) 350, 782, 930
BsmAI GTCTC 4 cut(s) 246, 489, 633, 863
BsmFI GGGAC 4 cut(s) 112, 327, 337, 503
BsmI GAATGC 1 cut(s) 155
Bso31I GGTCTC 2 cut(s) 246, 489
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 5 cut(s) 144, 190, 604, 660, 732
Bsp68I TCGCGA 1 cut(s) 498
BspACI CCGC 1 cut(s) 890
BspCNI CTCAG 1 cut(s) 859
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 884
BspOI GCTAGC 1 cut(s) 963
BspPI GGATC 2 cut(s) 655, 740
BspTNI GGTCTC 2 cut(s) 246, 489
BsrDI GCAATG 1 cut(s) 974
BsrI ACTGG 2 cut(s) 100, 769
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 5 cut(s) 144, 190, 604, 660, 732
BssT1I CCWWGG 1 cut(s) 565
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 969
BstC8I GCNNGC 4 cut(s) 153, 920, 961, 965
BstDEI CTNAG 2 cut(s) 6, 867
BstF5I GGATG 2 cut(s) 454, 707
BstFNI CGCG 1 cut(s) 498
BstKTI GATC 5 cut(s) 147, 193, 607, 663, 735
BstMAI GTCTC 4 cut(s) 246, 489, 633, 863
BstMBI GATC 5 cut(s) 144, 190, 604, 660, 732
BstMWI GCNNNNNNNGC 4 cut(s) 719, 734, 924, 969
BstNSI RCATGY 2 cut(s) 209, 449
BstSFI CTRYAG 1 cut(s) 585
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 190, 660
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 2 cut(s) 190, 660
BtsCI GGATG 2 cut(s) 454, 707
BtsI GCAGTG 1 cut(s) 941
BtsIMutI CAGTG 2 cut(s) 127, 941
BtuMI TCGCGA 1 cut(s) 498
BveI ACCTGC 1 cut(s) 884
Cac8I GCNNGC 4 cut(s) 153, 920, 961, 965
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 773
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 2 cut(s) 206, 446
CviQI GTAC 1 cut(s) 773
DdeI CTNAG 2 cut(s) 6, 867
DpnI GATC 5 cut(s) 146, 192, 606, 662, 734
DpnII GATC 5 cut(s) 144, 190, 604, 660, 732
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 565
Eco31I GGTCTC 2 cut(s) 246, 489
Eco32I GATATC 1 cut(s) 864
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 3 cut(s) 435, 621, 650
EcoRV GATATC 1 cut(s) 864
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 2 cut(s) 209, 449
FaqI GGGAC 4 cut(s) 112, 327, 337, 503
FatI CATG 2 cut(s) 205, 445
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 2 cut(s) 85, 595
Fnu4HI GCNGC 2 cut(s) 888, 891
FokI GGATG 2 cut(s) 441, 714
Fsp4HI GCNGC 2 cut(s) 888, 891
FspBI CTAG 4 cut(s) 249, 309, 420, 960
GluI GCNGC 2 cut(s) 888, 891
GsaI CCCAGC 1 cut(s) 74
HapII CCGG 1 cut(s) 908
Hin1II CATG 2 cut(s) 209, 449
HinfI GANTC 2 cut(s) 325, 493
HpaII CCGG 1 cut(s) 908
Hpy166II GTNNAC 2 cut(s) 86, 596
Hpy188I TCNGA 4 cut(s) 30, 67, 415, 868
Hpy188III TCNNGA 4 cut(s) 329, 425, 497, 649
Hpy8I GTNNAC 2 cut(s) 86, 596
HpyAV CCTTC 3 cut(s) 380, 674, 835
HpyCH4V TGCA 8 cut(s) 37, 134, 449, 528, 705, 713, 941, 972
HpyF10VI GCNNNNNNNGC 4 cut(s) 719, 734, 924, 969
HpyF3I CTNAG 2 cut(s) 6, 867
Hsp92II CATG 2 cut(s) 209, 449
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 5 cut(s) 144, 190, 604, 660, 732
Lsp1109I GCAGC 1 cut(s) 899
LweI GCATC 3 cut(s) 46, 692, 799
MaeI CTAG 4 cut(s) 249, 309, 420, 960
MaeIII GTNAC 2 cut(s) 760, 896
MalI GATC 5 cut(s) 146, 192, 606, 662, 734
MboI GATC 5 cut(s) 144, 190, 604, 660, 732
MboII GAAGA 6 cut(s) 137, 395, 403, 614, 860, 991
MflI RGATCY 2 cut(s) 190, 660
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 6 cut(s) 291, 432, 501, 540, 621, 683
MlyI GAGTC 2 cut(s) 319, 487
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 7, 52, 344, 432, 636, 656
MseI TTAA 3 cut(s) 21, 318, 504
MslI CAYNNNNRTG 3 cut(s) 210, 727, 807
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 1 cut(s) 908
Mva1269I GAATGC 1 cut(s) 155
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 719, 734, 924, 969
NdeII GATC 5 cut(s) 144, 190, 604, 660, 732
NheI GCTAGC 1 cut(s) 959
NlaIII CATG 2 cut(s) 209, 449
NlaIV GGNNCC 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 760
NruI TCGCGA 1 cut(s) 498
NspI RCATGY 2 cut(s) 209, 449
OliI CACNNNNGTG 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 613
PctI GAATGC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 889, 892
PleI GAGTC 2 cut(s) 319, 487
PpsI GAGTC 2 cut(s) 319, 487
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 823
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 190, 660
RruI TCGCGA 1 cut(s) 498
RsaI GTAC 1 cut(s) 774
RsaNI GTAC 1 cut(s) 773
RseI CAYNNNNRTG 3 cut(s) 210, 727, 807
SaqAI TTAA 3 cut(s) 21, 318, 504
SatI GCNGC 2 cut(s) 888, 891
Sau3AI GATC 5 cut(s) 144, 190, 604, 660, 732
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 319, 487
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 3 cut(s) 46, 692, 799
SfcI CTRYAG 1 cut(s) 585
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 210, 727, 807
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 6 cut(s) 291, 432, 501, 540, 621, 683
SsiI CCGC 1 cut(s) 890
SspI AATATT 1 cut(s) 678
SspMI CTAG 4 cut(s) 249, 309, 420, 960
StyI CCWWGG 1 cut(s) 565
TaqI TCGA 1 cut(s) 159
TasI AATT 6 cut(s) 291, 432, 501, 540, 621, 683
TauI GCSGC 1 cut(s) 893
Tru1I TTAA 3 cut(s) 21, 318, 504
Tru9I TTAA 3 cut(s) 21, 318, 504
TscAI CASTG 2 cut(s) 127, 941
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 1 cut(s) 887
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 3 cut(s) 228, 318, 443
TspRI CASTG 2 cut(s) 127, 941
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 2 cut(s) 209, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 2 cut(s) 85, 595
XspI CTAG 4 cut(s) 249, 309, 420, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.