Rh3BG036200

aldo-keto reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000149
Physical Location & Seq
Forward (+)
2385784 .. 2389244
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG036200.1

Sequence Viewer

Length: 795 bp
ATGGATGAAGCTAGCCAAATCCAAGTTCCAAGGGTTAAACTGGGCAATCAGGGACTTGAGGTCTCAAAATTGGGGTTTGGATGCATGGGCCTGTCTGGAGTCTACAACTCTCCTCTTGCTGATGAGGATGGAATCTCAATAATAAAAGAGGCTTTCAATAAAGGAATCACTTTCTTTGACACAGCTGATGTATACGGACCTCATTTGAATGAAATTGTTGTCGGAAAGGCACTGAAGCAGTTGCCAAGAGAAAAAATTCAATTAGCCACAAAGTTTGGTATTGTTGGAAGAGCGGATCCTCCTGGTGTTACAGCCAAGGGTACTCCAGAGTATGTCCGCTCATGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTTCGGTGCCTATAGAGGAAACTATGGGTGAGCTGAAGAAACTGGTGGAAGAAGGAAAAATAAAATATATCGGGTTATCTGAAGCCAGTCCGGACACCATAAGGAGGGCTTATGCAGTTCATCCCATCACGGCTCTACAAATGGAGTGGTCCCTCTGGACTCGTGATATTGAGGAAGAAATTGTTCCTCTTTGCAGGGAGCTTGGCATTGGAATAGTTTCATATAGTCCTCTTGGTCGTGGGTTTTTCGGTGGGAAAGCAGTTGTGGAAAGTGTGCCTTCAAATAGTTTCGTGGTAGATATTCTTCGTCATTTATTCTGTCCAATCCGTTGTCAGAGGATATGCAGTAAATTTTATTTATGTCGACACATCCTCGGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

264

Amino Acids

29.29

Weight (kDa)

6.24

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 225 6.6e-59 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 2 cut(s) 293, 339
AccI GTMKAC 3 cut(s) 102, 192, 775
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 2 cut(s) 293, 337
AclWI GGATC 2 cut(s) 290, 303
AcsI RAATTY 2 cut(s) 255, 761
AcuI CTGAAG 3 cut(s) 254, 467, 513
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 516
AgsI TTSAA 5 cut(s) 157, 208, 260, 361, 693
AhdI GACNNNNNGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 5 cut(s) 11, 185, 357, 445, 613
AluI AGCT 5 cut(s) 11, 185, 357, 445, 613
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 2 cut(s) 290, 303
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 255, 761
Asp700I GAANNNNTTC 3 cut(s) 255, 594, 628
AspS9I GGNCC 3 cut(s) 88, 197, 561
AsuHPI GGTGA 1 cut(s) 452
AsuNHI GCTAGC 2 cut(s) 11, 353
AvaII GGWCC 2 cut(s) 197, 561
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 418
BarI GAAGNNNNNNTAC 2 cut(s) 699, 731
BauI CACGAG 1 cut(s) 573
BccI CCATC 2 cut(s) 122, 545
BceAI ACGGC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 12, 354
BfmI CTRYAG 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 197, 561
BmeRI GACNNNNNGTC 1 cut(s) 59
BmgT120I GGNCC 3 cut(s) 88, 197, 561
BmiI GGNNCC 3 cut(s) 297, 420, 563
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 71
BmtI GCTAGC 2 cut(s) 15, 357
BmuI ACTGGG 1 cut(s) 50
BpmI CTGGAG 2 cut(s) 117, 309
BpuEI CTTGAG 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 29, 315, 784
BsaWI WCCGGW 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse1I ACTGG 3 cut(s) 45, 459, 498
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 29, 315, 784
BseGI GGATG 5 cut(s) 10, 86, 133, 532, 780
BseLI CCNNNNNNNGG 1 cut(s) 516
BseNI ACTGG 3 cut(s) 45, 459, 498
BseRI GAGGAG 1 cut(s) 102
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 2 cut(s) 66, 547
BslI CCNNNNNNNGG 1 cut(s) 516
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 66, 547
BsnI GGCC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 67
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 2 cut(s) 295, 385
BspACI CCGC 2 cut(s) 293, 337
BspANI GGCC 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 502
BspLI GGNNCC 3 cut(s) 297, 420, 563
BspOI GCTAGC 2 cut(s) 15, 357
BspPI GGATC 2 cut(s) 290, 303
BspQI GCTCTTC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 67
BsrBI CCGCTC 2 cut(s) 293, 339
BsrI ACTGG 3 cut(s) 45, 459, 498
BssECI CCNNGG 3 cut(s) 29, 315, 784
BssMI GATC 2 cut(s) 295, 385
BssNAI GTATAC 1 cut(s) 193
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 2 cut(s) 29, 315
Bst1107I GTATAC 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 13, 355
BstF5I GGATG 5 cut(s) 10, 86, 133, 532, 780
BstKTI GATC 2 cut(s) 298, 388
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 295, 385
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BstZ17I GTATAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 5 cut(s) 10, 86, 133, 532, 780
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 13, 355
Cfr13I GGNCC 3 cut(s) 88, 197, 561
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 321
CspCI CAANNNNNGTGG 4 cut(s) 256, 291, 539, 574
CviAII CATG 2 cut(s) 85, 342
CviQI GTAC 1 cut(s) 321
DpnI GATC 2 cut(s) 297, 387
DpnII GATC 2 cut(s) 295, 385
DriI GACNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 283
Eam1105I GACNNNNNGTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 29, 315
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 197, 561
Eco57I CTGAAG 3 cut(s) 254, 467, 513
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 29, 315
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 2 cut(s) 29, 315
FaeI CATG 2 cut(s) 88, 345
FalI AAGNNNNNCTT 4 cut(s) 505, 537, 673, 705
FaqI GGGAC 2 cut(s) 66, 547
FatI CATG 2 cut(s) 84, 341
FblI GTMKAC 3 cut(s) 102, 192, 775
FokI GGATG 5 cut(s) 17, 93, 140, 519, 767
FspBI CTAG 2 cut(s) 12, 354
GsuI CTGGAG 2 cut(s) 117, 309
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 88, 345
HincII GTYRAC 1 cut(s) 776
HindII GTYRAC 1 cut(s) 776
HinfI GANTC 4 cut(s) 99, 132, 165, 571
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 5 cut(s) 103, 193, 376, 409, 776
Hpy188I TCNGA 3 cut(s) 224, 493, 747
Hpy188III TCNNGA 6 cut(s) 96, 326, 368, 503, 568, 575
Hpy8I GTNNAC 5 cut(s) 103, 193, 376, 409, 776
HpyAV CCTTC 2 cut(s) 458, 699
HpyCH4V TGCA 4 cut(s) 84, 527, 606, 756
Hsp92II CATG 2 cut(s) 88, 345
Kpn2I TCCGGA 1 cut(s) 502
Kzo9I GATC 2 cut(s) 295, 385
LguI GCTCTTC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 610
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 12, 354
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 297, 387
MbiI CCGCTC 2 cut(s) 293, 339
MboI GATC 2 cut(s) 295, 385
MboII GAAGA 5 cut(s) 300, 460, 473, 599, 707
MflI RGATCY 1 cut(s) 295
MluCI AATT 6 cut(s) 68, 213, 255, 260, 591, 761
MlyI GAGTC 2 cut(s) 108, 565
MmeI TCCRAC 2 cut(s) 202, 265
Mph1103I ATGCAT 1 cut(s) 86
MroI TCCGGA 1 cut(s) 502
MroXI GAANNNNTTC 3 cut(s) 255, 594, 628
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 2 cut(s) 207, 416
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
NdeII GATC 2 cut(s) 295, 385
NheI GCTAGC 2 cut(s) 11, 353
NlaIII CATG 2 cut(s) 88, 345
NlaIV GGNNCC 3 cut(s) 297, 420, 563
NsiI ATGCAT 1 cut(s) 86
OliI CACNNNNGTG 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 283
PdmI GAANNNNTTC 3 cut(s) 255, 594, 628
PfeI GAWTC 2 cut(s) 132, 165
PleI GAGTC 2 cut(s) 107, 565
PpsI GAGTC 2 cut(s) 107, 565
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 297, 420, 563
PspPI GGNCC 3 cut(s) 88, 197, 561
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 2 cut(s) 207, 416
SalI GTCGAC 1 cut(s) 774
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 2 cut(s) 295, 385
Sau96I GGNCC 3 cut(s) 88, 197, 561
SchI GAGTC 2 cut(s) 108, 565
ScrFI CCNGG 1 cut(s) 303
SetI ASST 7 cut(s) 13, 63, 187, 202, 359, 447, 615
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 2 cut(s) 197, 561
SmiMI CAYNNNNRTG 2 cut(s) 207, 416
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 6 cut(s) 68, 213, 255, 260, 591, 761
SsiI CCGC 2 cut(s) 293, 337
SspMI CTAG 2 cut(s) 12, 354
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 2 cut(s) 29, 315
TaqI TCGA 1 cut(s) 775
TasI AATT 6 cut(s) 68, 213, 255, 260, 591, 761
TfiI GAWTC 2 cut(s) 132, 165
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 5 cut(s) 21, 225, 521, 621, 780
TspGWI ACGGA 2 cut(s) 210, 728
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 197, 561
XapI RAATTY 2 cut(s) 255, 761
XmiI GTMKAC 3 cut(s) 102, 192, 775
XmnI GAANNNNTTC 3 cut(s) 255, 594, 628
XspI CTAG 2 cut(s) 12, 354
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.