Rh3BG036100

Aldo/keto reductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
2384201 .. 2385247
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG036100.1

Sequence Viewer

Length: 603 bp
ATGGAAGAGCTAAAGAAGCTGGTGAATGAGGGGAAGATAAAGTATATTGGATTATCTGAAGCTAGTGCAGAAACAATAAGGAGGGCACATGCAGTTCATCCTATTACTGCTGTACAAATGGAGTGGAATATTAGGACTCGTGAAATTGAGGAAGAAATTGTCCCTCTTTGCAGGGAACTTGAAATTGGGATGGTGACATACAGCCCTCTTGGTCGTGGATTTTTTGCTGGCAAGGCAATGGTGGAAAGTTTGCCTGCAAATAGTTTTCTGCAATCACTTCCTCGTTGTCAAGGCGACAACCTTGAGAAAAACAAGATTCTTTATGGTAAAGTACAATACTTGGCTGAGAAACATGGATGCACCCCTGCACAACTCGCGCTTGCGTGGATTGTTCATCAAGGTGATCATGTGGTACCTATCCCTGGGACAACTAAGACTGAAAATATTGATGCTAATGTCGGTTCCTTGAGAGTGAAACTCACTGAAGAAGATATACAGGAGATATCTGATATGATACCCATCAATGCAGCGACAGGGAATAGAGTATCCGATAGTCTTATTCGCTGCTCTTGGAAGTTTGCAAATACACCACCAAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

200

Amino Acids

22.22

Weight (kDa)

6.23

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 170 9.3e-37 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 1 cut(s) 377
AcuI CTGAAG 2 cut(s) 78, 504
AfaI GTAC 3 cut(s) 114, 333, 414
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 421
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 4 cut(s) 10, 19, 62, 600
AluI AGCT 4 cut(s) 10, 19, 62, 600
ApeKI GCWGC 2 cut(s) 527, 564
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 379
AsuHPI GGTGA 3 cut(s) 34, 205, 413
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 412
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BauI CACGAG 1 cut(s) 138
BbvI GCAGC 2 cut(s) 539, 551
BccI CCATC 2 cut(s) 184, 527
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 403
BfaI CTAG 2 cut(s) 63, 601
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 2 cut(s) 528, 565
BlsI GCNGC 2 cut(s) 529, 566
Bme1390I CCNGG 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 414, 463
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 2 cut(s) 347, 439
BplI GAGNNNNNCTC 2 cut(s) 462, 494
BpuEI CTTGAG 2 cut(s) 323, 487
BsaBI GATNNNNATC 1 cut(s) 518
BsaJI CCNNGG 2 cut(s) 421, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 421, 422
BseGI GGATG 3 cut(s) 97, 195, 362
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 2 cut(s) 539, 551
BsgI GTGCAG 2 cut(s) 87, 351
Bsh1236I CGCG 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 412
BslFI GGGAC 2 cut(s) 146, 439
BslI CCNNNNNNNGG 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 146, 439
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 112
Bsp143I GATC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 2 cut(s) 414, 463
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 421, 422
BssMI GATC 1 cut(s) 403
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 112
BstC8I GCNNGC 3 cut(s) 229, 255, 381
BstDEI CTNAG 2 cut(s) 345, 432
BstF5I GGATG 3 cut(s) 97, 195, 362
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 3 cut(s) 16, 233, 374
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 2 cut(s) 539, 551
BsuI GTATCC 1 cut(s) 556
BtsCI GGATG 3 cut(s) 97, 195, 362
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 3 cut(s) 229, 255, 381
CfoI GCGC 1 cut(s) 379
Csp6I GTAC 3 cut(s) 113, 332, 413
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 3 cut(s) 89, 353, 407
CviJI RGCY 6 cut(s) 10, 19, 62, 204, 344, 600
CviKI_1 RGCY 6 cut(s) 10, 19, 62, 204, 344, 600
CviQI GTAC 3 cut(s) 113, 332, 413
DdeI CTNAG 2 cut(s) 345, 432
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eco32I GATATC 1 cut(s) 504
Eco57I CTGAAG 2 cut(s) 78, 504
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 504
FaeI CATG 3 cut(s) 92, 356, 410
FaiI YATR 8 cut(s) 45, 90, 199, 324, 354, 408, 494, 512
FaqI GGGAC 2 cut(s) 146, 439
FatI CATG 3 cut(s) 88, 352, 406
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 528, 565
FokI GGATG 3 cut(s) 84, 202, 369
Fsp4HI GCNGC 2 cut(s) 528, 565
FspBI CTAG 2 cut(s) 63, 601
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 528, 565
HhaI GCGC 1 cut(s) 379
Hin1II CATG 3 cut(s) 92, 356, 410
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 2 cut(s) 136, 316
HphI GGTGA 3 cut(s) 34, 205, 413
Hpy188I TCNGA 3 cut(s) 58, 508, 550
Hpy188III TCNNGA 1 cut(s) 140
HpyCH4V TGCA 9 cut(s) 68, 92, 171, 257, 271, 360, 368, 527, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 233, 374
HpyF3I CTNAG 2 cut(s) 345, 432
Hsp92II CATG 3 cut(s) 92, 356, 410
HspAI GCGC 1 cut(s) 377
KpnI GGTACC 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 1 cut(s) 403
LpnPI CCDG 9 cut(s) 5, 157, 213, 267, 378, 408, 435, 482, 519
Lsp1109I GCAGC 2 cut(s) 539, 551
LweI GCATC 2 cut(s) 347, 439
MaeI CTAG 2 cut(s) 63, 601
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 5 cut(s) 17, 46, 164, 497, 500
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 3 cut(s) 144, 156, 183
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 6 cut(s) 22, 75, 142, 174, 216, 291
MslI CAYNNNNRTG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 423
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 3 cut(s) 16, 233, 374
NdeII GATC 1 cut(s) 403
NlaIII CATG 3 cut(s) 92, 356, 410
NlaIV GGNNCC 2 cut(s) 414, 463
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 92
PasI CCCWGGG 1 cut(s) 422
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 529, 566
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 414, 463
RsaI GTAC 3 cut(s) 114, 333, 414
RsaNI GTAC 3 cut(s) 113, 332, 413
RseI CAYNNNNRTG 1 cut(s) 399
SatI GCNGC 2 cut(s) 528, 565
Sau3AI GATC 1 cut(s) 403
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 12, 21, 64, 303, 403, 418, 602
SfaNI GCATC 2 cut(s) 347, 439
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 302, 466
SmoI CTYRAG 2 cut(s) 302, 466
Sse9I AATT 3 cut(s) 144, 156, 183
SspI AATATT 2 cut(s) 130, 445
SspMI CTAG 2 cut(s) 63, 601
StyD4I CCNGG 1 cut(s) 421
TasI AATT 3 cut(s) 144, 156, 183
TatI WGTACW 2 cut(s) 112, 331
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 527, 564
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 86, 383
TspRI CASTG 1 cut(s) 487
XceI RCATGY 1 cut(s) 92
XspI CTAG 2 cut(s) 63, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.