Rh3DG035400

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000149
Physical Location & Seq
Forward (+)
2358567 .. 2372615
14049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG035400.1

Sequence Viewer

Length: 549 bp
ATGTCAAGTGGTGGCACTATGTTTGTTATATGCTTGACAAATGGCATAAGCATGATGATGGATGGGACGACAAAGACTGAAAATATTGATGCTAATGTCGGTTCCTGGAGAGTGAAACTCACTAAAGAACATATACAGGAGATATCTGATATGATACTCATCGATGCAGCGACAGGGAATAGAGTATCCGATAGTCCTTTCTCGGATAGGGTTTCTGGGTCGGATTCAACTTCCACGGATCATAGATTCATAATCCTAGGGCTACGTCACTCTATCTCTGGCGCACTACTCCACTTTGCTAATCTCAGTCCGCTTTATAACTGCGCTTCTAATGGCTACTTCAGTGTGCATGAACATCTCCTTGTGTTCAATCCCAGAGATACTGCTGCCGAGTTTGGATGGAATTCATGGCATGATCTAGTCTCTAGAGGTGCTTATCAAGTTTTCCAAGCTTGTTTGATTTGGAATTGGGAATTGGTGGAATCAAATCAATTAGGCAGTACAGAAATGTTCGAATTGACAACAAATAAATCTGTTGTCAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

182

Amino Acids

20.18

Weight (kDa)

5.2

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AciI CCGC 1 cut(s) 311
AclWI GGATC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 325
AfaI GTAC 1 cut(s) 502
AgsI TTSAA 2 cut(s) 228, 370
AjnI CCWGG 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 167, 386
ApoI RAATTY 1 cut(s) 403
AspA2I CCTAGG 1 cut(s) 256
AspLEI GCGC 2 cut(s) 284, 326
AsuII TTCGAA 1 cut(s) 513
AvrII CCTAGG 1 cut(s) 256
BbvI GCAGC 2 cut(s) 179, 373
BccI CCATC 3 cut(s) 52, 56, 393
BciT130I CCWGG 1 cut(s) 106
BciVI GTATCC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 3 cut(s) 257, 419, 426
BfuI GTATCC 1 cut(s) 196
BisI GCNGC 2 cut(s) 168, 387
BlnI CCTAGG 1 cut(s) 256
BlsI GCNGC 2 cut(s) 169, 388
Bme1390I CCNGG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 2 cut(s) 79, 154
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BpmI CTGGAG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 234, 256
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 234, 256
BseGI GGATG 2 cut(s) 67, 404
BseJI GATNNNNATC 1 cut(s) 158
BseMII CTCAG 1 cut(s) 319
BseXI GCAGC 2 cut(s) 179, 373
BshVI ATCGAT 1 cut(s) 162
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 513
Bsp143I GATC 2 cut(s) 238, 415
BspACI CCGC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 318
BspDI ATCGAT 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 234, 256
BssMI GATC 2 cut(s) 238, 415
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 106
BstBI TTCGAA 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 67, 404
BstHHI GCGC 2 cut(s) 284, 326
BstKTI GATC 2 cut(s) 241, 418
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 2 cut(s) 238, 415
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 179, 373
Bsu15I ATCGAT 1 cut(s) 162
BsuI GTATCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 67, 404
BtsIMutI CAGTG 1 cut(s) 349
CfoI GCGC 2 cut(s) 284, 326
ClaI ATCGAT 1 cut(s) 162
Csp6I GTAC 1 cut(s) 501
CviAII CATG 4 cut(s) 52, 350, 408, 413
CviJI RGCY 3 cut(s) 262, 336, 452
CviKI_1 RGCY 3 cut(s) 262, 336, 452
CviQI GTAC 1 cut(s) 501
DdeI CTNAG 1 cut(s) 305
DpnI GATC 2 cut(s) 240, 417
DpnII GATC 2 cut(s) 238, 415
Eco130I CCWWGG 1 cut(s) 256
Eco32I GATATC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 4 cut(s) 55, 353, 411, 416
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 51, 349, 407, 412
Fnu4HI GCNGC 2 cut(s) 168, 387
FokI GGATG 2 cut(s) 74, 411
Fsp4HI GCNGC 2 cut(s) 168, 387
FspBI CTAG 3 cut(s) 257, 419, 426
GlaI GCGC 2 cut(s) 283, 325
GluI GCNGC 2 cut(s) 168, 387
GsuI CTGGAG 1 cut(s) 127
HhaI GCGC 2 cut(s) 284, 326
Hin1II CATG 4 cut(s) 55, 353, 411, 416
Hin6I GCGC 2 cut(s) 282, 324
HinP1I GCGC 2 cut(s) 282, 324
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 3 cut(s) 224, 246, 482
Hpy188I TCNGA 4 cut(s) 148, 190, 205, 223
Hpy188III TCNNGA 1 cut(s) 426
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 167, 349
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 4 cut(s) 55, 353, 411, 416
HspAI GCGC 2 cut(s) 282, 324
Kzo9I GATC 2 cut(s) 238, 415
LpnPI CCDG 7 cut(s) 91, 118, 122, 159, 201, 264, 388
Lsp1109I GCAGC 2 cut(s) 179, 373
LweI GCATC 2 cut(s) 79, 154
MaeI CTAG 3 cut(s) 257, 419, 426
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 240, 417
MboI GATC 2 cut(s) 238, 415
MluCI AATT 5 cut(s) 403, 466, 473, 491, 515
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 1 cut(s) 422
MslI CAYNNNNRTG 2 cut(s) 50, 56
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
NdeII GATC 2 cut(s) 238, 415
NlaIII CATG 4 cut(s) 55, 353, 411, 416
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 266
NspV TTCGAA 1 cut(s) 513
PfeI GAWTC 3 cut(s) 224, 246, 482
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 2 cut(s) 169, 388
PsiI TTATAA 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 2 cut(s) 50, 56
SatI GCNGC 2 cut(s) 168, 387
Sau3AI GATC 2 cut(s) 238, 415
ScrFI CCNGG 1 cut(s) 106
SetI ASST 3 cut(s) 268, 433, 454
SfaNI GCATC 2 cut(s) 79, 154
SfuI TTCGAA 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 50, 56
Sse9I AATT 5 cut(s) 403, 466, 473, 491, 515
SsiI CCGC 1 cut(s) 311
SspI AATATT 1 cut(s) 85
SspMI CTAG 3 cut(s) 257, 419, 426
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 256
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 162, 513
TasI AATT 5 cut(s) 403, 466, 473, 491, 515
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 3 cut(s) 224, 246, 482
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 2 cut(s) 167, 386
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 238, 366, 396
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 349
XapI RAATTY 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 425
XmaJI CCTAGG 1 cut(s) 256
XspI CTAG 3 cut(s) 257, 419, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.