Rh3DG064800

Aldo/keto reductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
4298724 .. 4302124
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG064800.1

Sequence Viewer

Length: 438 bp
ATGGCTGAGGTTGAGGGAGTCCGAATTCCGAGAGTGCAACTAGGAAATCAAGGATTTGAGCGTTCAACTCCTCGTTGTCAAGGAGACAACCTCAAGAAAAATAAGATCCTTCAAGGTAAAGTACAGAACTTGGCTGAAAAATATGGATGCACCCCTGCACAACTAGCACTTGCGTGGCTCATTGATCAACCCGATGTCTGCTGTGTGCCTGGTGTTGTACCTATATTTGGCACAACCAAGACTATAAATATTGATGCTAATGTTGGTTCTGTGAGAGTGAATCTATCTAAAGAAGATATACAAGAGATATCTGAGGCAATACCTATCAACGCAGCGGCAGGGTACAGGCTACCAGACTACTTACTTTCCTGCCTTTGGCAGTTTGCAGATACACCACCAAAAGCTAGCAAGCCATGCAACCAAAAGAAGCCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

15.84

Weight (kDa)

8.54

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 29 - 106 1.6e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000149)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01350 FvH4_4g01550 FvH4_4g01550 FvH4_4g01550 FvH4_6g03001 FvH4_6g03010 FvH4_6g03030 FvH4_6g03050 FvH4_6g03050 FvH4_6g03050 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03051 FvH4_6g03052 FvH4_6g03070 FvH4_6g03070 FvH4_6g03110
malus_domestica MD04G1223200.v1.1 MD08G1240600.v1.1 MD12G1239000.v1.1 MD12G1239100.v1.1 MD12G1239200.v1.1 MD12G1239300.v1.1 MD12G1239400.v1.1 MD12G1239600.v1.1 MD12G1239800.v1.1 MD12G1240000.v1.1 MD12G1240300.v1.1 MD12G1240400.v1.1 MD13G1200700.v1.1
prunus_persica Prupe.1G021900_v2.0.a1 Prupe.1G022000_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G141300_v2.0.a1 Prupe.6G341900_v2.0.a1 Prupe.6G342100_v2.0.a1 Prupe.6G342200_v2.0.a1 Prupe.6G342300_v2.0.a1
pyrus_communis pycom04g19710 pycom12g21970 pycom12g21980 pycom12g21990 pycom12g22000 pycom12g22020 pycom13g17420 pycom16g16880
rosa_chinensis RchiOBHm_Chr3g0450451 RchiOBHm_Chr3g0451211 RchiOBHm_Chr3g0451221 RchiOBHm_Chr3g0451251 RchiOBHm_Chr3g0451261 RchiOBHm_Chr3g0451281 RchiOBHm_Chr3g0451321 RchiOBHm_Chr3g0451331 RchiOBHm_Chr3g0451341 RchiOBHm_Chr3g0454931 RchiOBHm_Chr4g0387811 RchiOBHm_Chr4g0387821 RchiOBHm_Chr4g0388101
rosa_laevigata RLG00000010080 RLG00000010092 RLG00000010093 RLG00000025402 RLG00000025666 RLG00000025667 RLG00000025668 RLG00000025669 RLG00000025672 RLG00000025673 RLG00000025674 RLG00000025675 RLG00000025676 RLG00000025678 RLG00000025679 RLG00000025729
rosa_multiflora Rmu_co8283913.1_g000001 Rmu_co8296899.1_g000001 Rmu_sc0000330.1_g000014 Rmu_sc0001792.1_g000004 Rmu_sc0002169.1_g000002 Rmu_sc0002180.1_g000028 Rmu_sc0002509.1_g000009 Rmu_sc0002575.1_g000011 Rmu_sc0002575.1_g000013 Rmu_sc0002575.1_g000015 Rmu_sc0002575.1_g000019 Rmu_sc0002575.1_g000021 Rmu_sc0002575.1_g000022 Rmu_sc0012229.1_g000010 Rmu_sc0012229.1_g000014 Rmu_sc0012229.1_g000017 Rmu_sc0012229.1_g000018 Rmu_sc0013958.1_g000001 Rmu_sc0030279.1_g000001 Rmu_sc0031850.1_g000002
rosa_roxburghii Rroxscaffold_163G00450840 Rroxscaffold_163G00450860 Rroxscaffold_163G00450870 Rroxscaffold_164G00436570 Rroxscaffold_5G00334430 Rroxscaffold_5G00334440 Rroxscaffold_5G00334650 Rroxscaffold_6G00428150 Rroxscaffold_6G00428660 Rroxscaffold_6G00428680 Rroxscaffold_6G00428710 Rroxscaffold_6G00428720 Rroxscaffold_6G00428730 Rroxscaffold_6G00428740 Rroxscaffold_6G00428750 Rroxscaffold_6G00428760
rosa_rugosa Rorug02G0535300 Rorug02G0627900 Rorug02G0632500 Rorug02G0632600 Rorug02G0633000 Rorug02G0633100 Rorug03G0003000 Rorug03G0313700 Rorug03G0314800 Rorug05G0229300 Rorug07G0155500
rosa_samantha Rh3AG028500 Rh3AG035300 Rh3AG035400 Rh3AG035500 Rh3AG035600 Rh3AG035700 Rh3AG035800 Rh3AG035900 Rh3AG062900 Rh3BG029000 Rh3BG035500 Rh3BG035600 Rh3BG035800 Rh3BG035900 Rh3BG036000 Rh3BG036100 Rh3BG036200 Rh3BG036300 Rh3BG036400 Rh3BG036500 Rh3BG036600 Rh3BG064800 Rh3CG027800 Rh3CG034200 Rh3CG034400 Rh3CG034500 Rh3CG034600 Rh3CG034700 Rh3CG034800 Rh3CG034900 Rh3CG063700 Rh3DG035100 Rh3DG035200 Rh3DG035400 Rh3DG035500 Rh3DG035600 Rh3DG035700 Rh3DG035800 Rh3DG035900 Rh3DG036000 Rh3DG036100 Rh3DG064800 Rh4AG018700 Rh4BG013600 Rh4BG013700 Rh4BG014900 Rh4CG021200 Rh4DG015600
rosa_wichuraiana Rw0G001850 Rw3G002200 Rw3G002580 Rw3G002590 Rw3G002610 Rw3G002620 Rw3G002630 Rw3G002640 Rw3G002650 Rw3G002660 Rw3G004920 Rw3G016120 Rw4G001220 Rw4G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 3 cut(s) 123, 219, 344
AfiI CCNNNNNNNGG 2 cut(s) 227, 375
AgsI TTSAA 2 cut(s) 66, 113
AjnI CCWGG 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 172
AluBI AGCT 1 cut(s) 404
AluI AGCT 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 24
AsuNHI GCTAGC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 3 cut(s) 41, 164, 405
BisI GCNGC 2 cut(s) 333, 336
BlsI GCNGC 2 cut(s) 334, 337
Bme1390I CCNGG 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 2 cut(s) 137, 244
BmtI GCTAGC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 75, 107
Bpu10I CCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 375
BseBI CCWGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 227, 375
BseMII CTCAG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 227, 375
BsmAI GTCTC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 105, 184
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 304
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 100
BssMI GATC 2 cut(s) 105, 184
Bst2UI CCWGG 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 406, 410
BstDEI CTNAG 2 cut(s) 6, 312
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 2 cut(s) 108, 187
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 105, 184
BstMWI GCNNNNNNNGC 2 cut(s) 164, 414
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 406, 410
Csp6I GTAC 3 cut(s) 122, 218, 343
CviAII CATG 1 cut(s) 414
CviJI RGCY 7 cut(s) 5, 134, 178, 349, 404, 412, 430
CviKI_1 RGCY 7 cut(s) 5, 134, 178, 349, 404, 412, 430
CviQI GTAC 3 cut(s) 122, 218, 343
DdeI CTNAG 2 cut(s) 6, 312
DpnI GATC 2 cut(s) 107, 186
DpnII GATC 2 cut(s) 105, 184
Eco32I GATATC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 309
FaeI CATG 1 cut(s) 417
FaiI YATR 6 cut(s) 144, 224, 245, 299, 415, 436
FatI CATG 1 cut(s) 413
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 333, 336
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 333, 336
FspBI CTAG 3 cut(s) 41, 164, 405
GluI GCNGC 2 cut(s) 333, 336
Hin1II CATG 1 cut(s) 417
HinfI GANTC 2 cut(s) 18, 280
Hpy188I TCNGA 3 cut(s) 23, 30, 313
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 37, 150, 158, 386, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 414
HpyF3I CTNAG 2 cut(s) 6, 312
Hsp92II CATG 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 105, 184
LpnPI CCDG 7 cut(s) 168, 195, 222, 324, 331, 366, 382
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 2 cut(s) 137, 244
MaeI CTAG 3 cut(s) 41, 164, 405
MalI GATC 2 cut(s) 107, 186
MboI GATC 2 cut(s) 105, 184
MboII GAAGA 1 cut(s) 305
MflI RGATCY 1 cut(s) 105
MluCI AATT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 4 cut(s) 7, 81, 101, 307
MslI CAYNNNNRTG 1 cut(s) 172
MspA1I CMGCKG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 164, 414
NdeII GATC 2 cut(s) 105, 184
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 1 cut(s) 417
OliI CACNNNNGTG 1 cut(s) 172
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 334, 337
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 3 cut(s) 123, 219, 344
RsaNI GTAC 3 cut(s) 122, 218, 343
RseI CAYNNNNRTG 1 cut(s) 172
SatI GCNGC 2 cut(s) 333, 336
Sau3AI GATC 2 cut(s) 105, 184
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 12, 93, 118, 223, 325, 406
SfaNI GCATC 2 cut(s) 137, 244
SmiMI CAYNNNNRTG 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 24
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 250
SspMI CTAG 3 cut(s) 41, 164, 405
StyD4I CCNGG 1 cut(s) 208
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 121
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 280
TseI GCWGC 1 cut(s) 332
XapI RAATTY 1 cut(s) 24
XspI CTAG 3 cut(s) 41, 164, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.